RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	DENND2A	Q9ULE3	1009 aa		13.92	□□□□□ -0.18
PTPN7-204	ENST00000462815	LRRFIP2	Q9Y608	721 aa	Known RBP	13.92	□□□□□ -0.18
PTPN7-204	ENST00000462815	CEP290	O15078	2479 aa		13.91	□□□□□ -0.18
PTPN7-204	ENST00000462815	DDTL	A6NHG4	134 aa	Predicted RBP	13.91	□□□□□ -0.18
PTPN7-204	ENST00000462815	ENTPD3	O75355	529 aa		13.91	□□□□□ -0.18
PTPN7-204	ENST00000462815	CYP2C8	P10632	490 aa		13.91	□□□□□ -0.18
PTPN7-204	ENST00000462815	PTPRA	P18433	802 aa		13.91	□□□□□ -0.18
PTPN7-204	ENST00000462815	SCYL3	Q8IZE3	742 aa		13.91	□□□□□ -0.18
PTPN7-204	ENST00000462815	MEIS3	Q99687	375 aa		13.91	□□□□□ -0.18
PTPN7-204	ENST00000462815	NOB1	Q9ULX3	412 aa	Known RBP	13.91	□□□□□ -0.18
PTPN7-204	ENST00000462815	AFG3L2	Q9Y4W6	797 aa		13.91	□□□□□ -0.18
PTPN7-204	ENST00000462815	MYPN	Q86TC9	1320 aa		13.9	□□□□□ -0.18
PTPN7-204	ENST00000462815		H0YGN5	161 aa		13.9	□□□□□ -0.18
PTPN7-204	ENST00000462815	ECM2	O94769	699 aa	Predicted RBP	13.9	□□□□□ -0.18
PTPN7-204	ENST00000462815	RHBDL3	P58872	404 aa		13.9	□□□□□ -0.18
PTPN7-204	ENST00000462815	PRKCZ	Q05513	592 aa		13.9	□□□□□ -0.18
PTPN7-204	ENST00000462815	MTX1	Q13505	466 aa		13.9	□□□□□ -0.18
PTPN7-204	ENST00000462815	PARK7	Q99497	189 aa	Known RBP	13.9	□□□□□ -0.18
PTPN7-204	ENST00000462815	GNL3L	Q9NVN8	582 aa	Known RBP	13.9	□□□□□ -0.18
PTPN7-204	ENST00000462815	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.9	□□□□□ -0.18
PTPN7-204	ENST00000462815	GABRQ	Q9UN88	632 aa		13.9	□□□□□ -0.18
PTPN7-204	ENST00000462815	LOC285556	D6RIA3	1793 aa		13.9	□□□□□ -0.18
PTPN7-204	ENST00000462815	CT47B1	P0C2W7	299 aa	Predicted RBP	13.89	□□□□□ -0.19
PTPN7-204	ENST00000462815	GRK4	P32298	578 aa		13.89	□□□□□ -0.19
PTPN7-204	ENST00000462815	GJA8	P48165	433 aa		13.89	□□□□□ -0.19
PTPN7-204	ENST00000462815	TIMM10	P62072	90 aa		13.89	□□□□□ -0.19
PTPN7-204	ENST00000462815	PRO3102	Q9H379	93 aa		13.89	□□□□□ -0.19
PTPN7-204	ENST00000462815	SLC45A1	Q9Y2W3	748 aa		13.89	□□□□□ -0.19
PTPN7-204	ENST00000462815	AK9	Q5TCS8	1911 aa		13.89	□□□□□ -0.19
PTPN7-204	ENST00000462815	SIPA1L1	O43166	1804 aa		13.89	□□□□□ -0.19
PTPN7-204	ENST00000462815	COL6A3	P12111	3177 aa		13.89	□□□□□ -0.19
PTPN7-204	ENST00000462815	MROH7-TTC4	A0A0A0MT08	1334 aa		13.89	□□□□□ -0.19
PTPN7-204	ENST00000462815	COL2A1	P02458	1487 aa	Predicted RBP	13.88	□□□□□ -0.19
PTPN7-204	ENST00000462815	CCL5	P13501	91 aa		13.88	□□□□□ -0.19
PTPN7-204	ENST00000462815	ZHX2	Q9Y6X8	837 aa		13.88	□□□□□ -0.19
PTPN7-204	ENST00000462815	GPR75-ASB3	A0A0A6YYF3	556 aa		13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815		A0A1B0GUL7	405 aa		13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	NPM3	O75607	178 aa	Known RBP	13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	FMNL1	O95466	1100 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	GJB1	P08034	283 aa		13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	BTD	P43251	543 aa		13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	RARS	P54136	660 aa	Known RBP	13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	CCDC84	Q86UT8	332 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	ZGPAT	Q8N5A5	531 aa	Known RBP	13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	RAET1E	Q8TD07	263 aa		13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	XAGE2	Q96GT9	111 aa		13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	API5	Q9BZZ5	524 aa	Known RBP	13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	TRIOBP	Q9H2D6	2365 aa		13.87	□□□□□ -0.19
PTPN7-204	ENST00000462815	TBC1D12	O60347	775 aa		13.86	□□□□□ -0.19
PTPN7-204	ENST00000462815	CTNND1	O60716	968 aa	Known RBP	13.86	□□□□□ -0.19
PTPN7-204	ENST00000462815	HOXD10	P28358	340 aa		13.86	□□□□□ -0.19
PTPN7-204	ENST00000462815	FCGRT	P55899	365 aa		13.86	□□□□□ -0.19
PTPN7-204	ENST00000462815	MECOM	Q03112	1051 aa		13.86	□□□□□ -0.19
PTPN7-204	ENST00000462815	TFCP2	Q12800	502 aa		13.86	□□□□□ -0.19
PTPN7-204	ENST00000462815	RRP1B	Q14684	758 aa	Known RBP	13.86	□□□□□ -0.19
PTPN7-204	ENST00000462815	PI16	Q6UXB8	463 aa		13.86	□□□□□ -0.19
PTPN7-204	ENST00000462815	FASTKD5	Q7L8L6	764 aa	Known RBP	13.86	□□□□□ -0.19
PTPN7-204	ENST00000462815	SLAIN1	Q8ND83	568 aa		13.86	□□□□□ -0.19
PTPN7-204	ENST00000462815	HMG20B	Q9P0W2	317 aa		13.86	□□□□□ -0.19
PTPN7-204	ENST00000462815	ATAD5	Q96QE3	1844 aa		13.85	□□□□□ -0.19
PTPN7-204	ENST00000462815	IRF5	Q13568	498 aa		13.85	□□□□□ -0.19
PTPN7-204	ENST00000462815	DZIP1	Q86YF9	867 aa	Known RBP	13.85	□□□□□ -0.19
PTPN7-204	ENST00000462815	NKX2-3	Q8TAU0	364 aa		13.85	□□□□□ -0.19
PTPN7-204	ENST00000462815	ARHGAP45	Q92619	1136 aa		13.85	□□□□□ -0.19
PTPN7-204	ENST00000462815	NSUN4	Q96CB9	384 aa	Known RBP	13.85	□□□□□ -0.19
PTPN7-204	ENST00000462815	UNC93B1	Q9H1C4	597 aa		13.85	□□□□□ -0.19
PTPN7-204	ENST00000462815	ABCF2	Q9UG63	623 aa		13.85	□□□□□ -0.19
PTPN7-204	ENST00000462815	MAST2	Q6P0Q8	1798 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	FAM196B	A6NMK8	535 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	SRGAP3	O43295	1099 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	ARID4A	P29374	1257 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	FLT3LG	P49771	235 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	PICALM	Q13492	652 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	TREML2	Q5T2D2	321 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	CHRDL2	Q6WN34	429 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	PXYLP1	Q8TE99	480 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	U2AF1L4	Q8WU68	220 aa	Known RBP	13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	RNF208	Q9H0X6	261 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	PICK1	Q9NRD5	415 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	RBM27	Q9P2N5	1060 aa	Known RBP	13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	AGTPBP1	Q9UPW5	1226 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	TNN	Q9UQP3	1299 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	PLXNB2	O15031	1838 aa		13.84	□□□□□ -0.19
PTPN7-204	ENST00000462815	TRIM75P	A6NK02	468 aa		13.83	□□□□□ -0.2
PTPN7-204	ENST00000462815	ELN	P15502	786 aa		13.83	□□□□□ -0.2
PTPN7-204	ENST00000462815	MVP	Q14764	893 aa	Known RBP	13.83	□□□□□ -0.2
PTPN7-204	ENST00000462815	GADL1	Q6ZQY3	521 aa		13.83	□□□□□ -0.2
PTPN7-204	ENST00000462815	PAK6	Q9NQU5	681 aa	Predicted RBP	13.83	□□□□□ -0.2
PTPN7-204	ENST00000462815	HDAC5	Q9UQL6	1122 aa		13.83	□□□□□ -0.2
PTPN7-204	ENST00000462815	ALPK3	Q96L96	1907 aa		13.83	□□□□□ -0.2
PTPN7-204	ENST00000462815	DNAH12	Q6ZR08	3092 aa		13.83	□□□□□ -0.2
PTPN7-204	ENST00000462815	FOCAD	Q5VW36	1801 aa		13.83	□□□□□ -0.2
PTPN7-204	ENST00000462815	CDK5RAP2	Q96SN8	1893 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	ADCY3	O60266	1144 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	SGPL1	O95470	568 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	INHA	P05111	366 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	GNAI3	P08754	354 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	MCAM	P43121	646 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	UBXN2A	P68543	259 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	SPTY2D1	Q68D10	685 aa	Predicted RBP	13.82	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms