RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 FAM163AQ96GL9 167 aaPredicted RBP19■□□□□ 0.63
SKA3-204ENST00000462482 ZHX2Q9Y6X8 837 aa19■□□□□ 0.63
SKA3-204ENST00000462482 LAMB1P07942 1786 aa19■□□□□ 0.63
SKA3-204ENST00000462482 TNRC18O15417 2968 aaPredicted RBP19■□□□□ 0.63
SKA3-204ENST00000462482 RAET1EQ8TD07 263 aa18.99■□□□□ 0.63
SKA3-204ENST00000462482 MROH7-TTC4A0A0A0MT08 1334 aa18.99■□□□□ 0.63
SKA3-204ENST00000462482 SRRDQ9UH36 339 aa18.98■□□□□ 0.63
SKA3-204ENST00000462482 CTNND1O60716 968 aaKnown RBP18.97■□□□□ 0.63
SKA3-204ENST00000462482 MAP4K4O95819 1239 aaPredicted RBP18.97■□□□□ 0.63
SKA3-204ENST00000462482 PTPRAP18433 802 aa18.97■□□□□ 0.63
SKA3-204ENST00000462482 FCGRTP55899 365 aa18.97■□□□□ 0.63
SKA3-204ENST00000462482 MECOMQ03112 1051 aa18.97■□□□□ 0.63
SKA3-204ENST00000462482 ATF7IPQ6VMQ6 1270 aa18.97■□□□□ 0.63
SKA3-204ENST00000462482 GADL1Q6ZQY3 521 aa18.97■□□□□ 0.63
SKA3-204ENST00000462482 NOL10Q9BSC4 688 aaKnown RBP18.97■□□□□ 0.63
SKA3-204ENST00000462482 RAI14Q9P0K7 980 aa18.97■□□□□ 0.63
SKA3-204ENST00000462482 BIN2Q9UBW5 565 aaPredicted RBP18.97■□□□□ 0.63
SKA3-204ENST00000462482 PHF20L1A8MW92 1017 aa18.96■□□□□ 0.63
SKA3-204ENST00000462482 TRIM27P14373 513 aa18.96■□□□□ 0.63
SKA3-204ENST00000462482 OSBPP22059 807 aa18.96■□□□□ 0.63
SKA3-204ENST00000462482 SPATA5Q8NB90 893 aa18.96■□□□□ 0.63
SKA3-204ENST00000462482 TRIM47Q96LD4 638 aa18.96■□□□□ 0.63
SKA3-204ENST00000462482 MYPNQ86TC9 1320 aa18.96■□□□□ 0.63
SKA3-204ENST00000462482 GPR75-ASB3A0A0A6YYF3 556 aa18.95■□□□□ 0.62
SKA3-204ENST00000462482 A0A0G2JLL6 359 aaPredicted RBP18.95■□□□□ 0.62
SKA3-204ENST00000462482 DDTLA6NHG4 134 aaPredicted RBP18.95■□□□□ 0.62
SKA3-204ENST00000462482 UQCRFS1P1P0C7P4 283 aa18.95■□□□□ 0.62
SKA3-204ENST00000462482 CYP2C8P10632 490 aa18.95■□□□□ 0.62
SKA3-204ENST00000462482 GRK4P32298 578 aa18.95■□□□□ 0.62
SKA3-204ENST00000462482 MOGSQ13724 837 aa18.95■□□□□ 0.62
SKA3-204ENST00000462482 SH3BP5LQ7L8J4 393 aa18.95■□□□□ 0.62
SKA3-204ENST00000462482 PRRT2Q7Z6L0 340 aaPredicted RBP18.95■□□□□ 0.62
SKA3-204ENST00000462482 NKX2-3Q8TAU0 364 aa18.95■□□□□ 0.62
SKA3-204ENST00000462482 SMCR8Q8TEV9 937 aaPredicted RBP18.95■□□□□ 0.62
SKA3-204ENST00000462482 CLUAP1Q96AJ1 413 aa18.95■□□□□ 0.62
SKA3-204ENST00000462482 HMG20BQ9P0W2 317 aa18.95■□□□□ 0.62
SKA3-204ENST00000462482 ATRNL1Q5VV63 1379 aa18.94■□□□□ 0.62
SKA3-204ENST00000462482 NPM3O75607 178 aaKnown RBP18.94■□□□□ 0.62
SKA3-204ENST00000462482 UBXN2AP68543 259 aa18.94■□□□□ 0.62
SKA3-204ENST00000462482 MAP3K10Q02779 954 aa18.94■□□□□ 0.62
SKA3-204ENST00000462482 OS9Q13438 667 aaPredicted RBP18.94■□□□□ 0.62
SKA3-204ENST00000462482 GPAT2Q6NUI2 795 aa18.94■□□□□ 0.62
SKA3-204ENST00000462482 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.94■□□□□ 0.62
SKA3-204ENST00000462482 DDX4Q9NQI0 724 aaKnown RBP18.94■□□□□ 0.62
SKA3-204ENST00000462482 LRP2BPQ9P2M1 347 aa18.94■□□□□ 0.62
SKA3-204ENST00000462482 SLC45A1Q9Y2W3 748 aa18.94■□□□□ 0.62
SKA3-204ENST00000462482 AFG3L2Q9Y4W6 797 aa18.94■□□□□ 0.62
SKA3-204ENST00000462482 ADGRA2Q96PE1 1338 aa18.94■□□□□ 0.62
SKA3-204ENST00000462482 TRIM75PA6NK02 468 aa18.93■□□□□ 0.62
SKA3-204ENST00000462482 ZKSCAN2Q63HK3 967 aa18.93■□□□□ 0.62
SKA3-204ENST00000462482 RFX7Q2KHR2 1363 aa18.93■□□□□ 0.62
SKA3-204ENST00000462482 TBC1D12O60347 775 aa18.92■□□□□ 0.62
SKA3-204ENST00000462482 BCAR3O75815 825 aa18.92■□□□□ 0.62
SKA3-204ENST00000462482 BCRP11274 1271 aa18.92■□□□□ 0.62
SKA3-204ENST00000462482 ARID4AP29374 1257 aaPredicted RBP18.92■□□□□ 0.62
SKA3-204ENST00000462482 HABP4Q5JVS0 413 aaKnown RBP18.92■□□□□ 0.62
SKA3-204ENST00000462482 CCDC158Q5M9N0 1113 aa18.92■□□□□ 0.62
SKA3-204ENST00000462482 TBC1D9Q6ZT07 1266 aa18.92■□□□□ 0.62
SKA3-204ENST00000462482 NSUN4Q96CB9 384 aaKnown RBP18.92■□□□□ 0.62
SKA3-204ENST00000462482 PNMA3Q9UL41 463 aa18.92■□□□□ 0.62
SKA3-204ENST00000462482 BAG3O95817 575 aa18.91■□□□□ 0.62
SKA3-204ENST00000462482 RHBDL3P58872 404 aa18.91■□□□□ 0.62
SKA3-204ENST00000462482 TTC39AQ5SRH9 613 aa18.91■□□□□ 0.62
SKA3-204ENST00000462482 PI16Q6UXB8 463 aa18.91■□□□□ 0.62
SKA3-204ENST00000462482 TEX11Q8IYF3 940 aa18.91■□□□□ 0.62
SKA3-204ENST00000462482 SLAIN1Q8ND83 568 aa18.91■□□□□ 0.62
SKA3-204ENST00000462482 TBC1D2Q9BYX2 928 aa18.91■□□□□ 0.62
SKA3-204ENST00000462482 OSBPL5Q9H0X9 879 aaPredicted RBP18.91■□□□□ 0.62
SKA3-204ENST00000462482 PNMA6EA0A0J9YXQ4 647 aa18.9■□□□□ 0.62
SKA3-204ENST00000462482 PLCG2P16885 1265 aa18.9■□□□□ 0.62
SKA3-204ENST00000462482 CTGFP29279 349 aa18.9■□□□□ 0.62
SKA3-204ENST00000462482 PRKCZQ05513 592 aa18.9■□□□□ 0.62
SKA3-204ENST00000462482 PABPC4Q13310 644 aaKnown RBP eCLIP18.9■□□□□ 0.626e-8■□□□□ 9.5
SKA3-204ENST00000462482 MTFR1Q15390 333 aa18.9■□□□□ 0.62
SKA3-204ENST00000462482 FTSJ3Q8IY81 847 aaKnown RBP18.9■□□□□ 0.62
SKA3-204ENST00000462482 AGTPBP1Q9UPW5 1226 aa18.9■□□□□ 0.62
SKA3-204ENST00000462482 TNPO2O14787 897 aaKnown RBP18.89■□□□□ 0.61
SKA3-204ENST00000462482 CCL5P13501 91 aa18.89■□□□□ 0.61
SKA3-204ENST00000462482 TMEM57Q8N5G2 664 aa18.89■□□□□ 0.61
SKA3-204ENST00000462482 TRIM34Q9BYJ4 488 aa18.89■□□□□ 0.61
SKA3-204ENST00000462482 RNF208Q9H0X6 261 aa18.89■□□□□ 0.61
SKA3-204ENST00000462482 GPR108Q9NPR9 543 aa18.89■□□□□ 0.61
SKA3-204ENST00000462482 MYH13Q9UKX3 1938 aa18.88■□□□□ 0.61
SKA3-204ENST00000462482 GJB1P08034 283 aa18.88■□□□□ 0.61
SKA3-204ENST00000462482 MCAMP43121 646 aa18.88■□□□□ 0.61
SKA3-204ENST00000462482 NAA16Q6N069 864 aaPredicted RBP18.88■□□□□ 0.61
SKA3-204ENST00000462482 PROCA1Q8NCQ7 364 aaPredicted RBP18.88■□□□□ 0.61
SKA3-204ENST00000462482 COA7Q96BR5 231 aa18.88■□□□□ 0.61
SKA3-204ENST00000462482 DHX36Q9H2U1 1008 aaKnown RBP18.88■□□□□ 0.61
SKA3-204ENST00000462482 AS3MTQ9HBK9 375 aa18.88■□□□□ 0.61
SKA3-204ENST00000462482 HERC5Q9UII4 1024 aaKnown RBP18.88■□□□□ 0.61
SKA3-204ENST00000462482 TNNQ9UQP3 1299 aa18.88■□□□□ 0.61
SKA3-204ENST00000462482 FAM196BA6NMK8 535 aa18.87■□□□□ 0.61
SKA3-204ENST00000462482 ADCY3O60266 1144 aa18.87■□□□□ 0.61
SKA3-204ENST00000462482 SURF6O75683 361 aaKnown RBP18.87■□□□□ 0.61
SKA3-204ENST00000462482 SLURP2P0DP57 97 aa18.87■□□□□ 0.61
SKA3-204ENST00000462482 SPP2Q13103 211 aa18.87■□□□□ 0.61
SKA3-204ENST00000462482 ZNF280CQ8ND82 737 aa18.87■□□□□ 0.61
SKA3-204ENST00000462482 ZNF384Q8TF68 577 aa18.87■□□□□ 0.61
SKA3-204ENST00000462482 DPF3Q92784 378 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms