RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 ELMO3Q96BJ8 720 aa6.66□□□□□ -1.34
VPS41-210ENST00000462429 EAF1Q96JC9 268 aaPredicted RBP6.66□□□□□ -1.34
VPS41-210ENST00000462429 LRRC3Q9BY71 257 aa6.66□□□□□ -1.34
VPS41-210ENST00000462429 UBP1Q9NZI7 540 aa6.66□□□□□ -1.34
VPS41-210ENST00000462429 AP4E1Q9UPM8 1137 aa6.66□□□□□ -1.34
VPS41-210ENST00000462429 SART1O43290 800 aaKnown RBP6.65□□□□□ -1.34
VPS41-210ENST00000462429 ALX3O95076 343 aa6.65□□□□□ -1.34
VPS41-210ENST00000462429 ADH5P11766 374 aa6.65□□□□□ -1.34
VPS41-210ENST00000462429 IREB2P48200 963 aaKnown RBP6.65□□□□□ -1.34
VPS41-210ENST00000462429 TNNI2P48788 182 aa6.65□□□□□ -1.34
VPS41-210ENST00000462429 SOX4Q06945 474 aaPredicted RBP6.65□□□□□ -1.34
VPS41-210ENST00000462429 MBTPS1Q14703 1052 aa6.65□□□□□ -1.34
VPS41-210ENST00000462429 ZC3H12AQ5D1E8 599 aaKnown RBP6.65□□□□□ -1.34
VPS41-210ENST00000462429 WIPI1Q5MNZ9 446 aaPredicted RBP6.65□□□□□ -1.34
VPS41-210ENST00000462429 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.65□□□□□ -1.34
VPS41-210ENST00000462429 TXNRD3Q86VQ6 643 aa6.65□□□□□ -1.34
VPS41-210ENST00000462429 NKD1Q969G9 470 aa6.65□□□□□ -1.34
VPS41-210ENST00000462429 PLPPR2Q96GM1 343 aa6.65□□□□□ -1.34
VPS41-210ENST00000462429 DCAF5Q96JK2 942 aa6.65□□□□□ -1.34
VPS41-210ENST00000462429 TINF2Q9BSI4 451 aa6.65□□□□□ -1.34
VPS41-210ENST00000462429 PCDHGC5Q9Y5F6 944 aa6.65□□□□□ -1.34
VPS41-210ENST00000462429 KRBA1A5PL33 1030 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 TMPRSS2O15393 492 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 TLR3O15455 904 aaKnown RBP6.64□□□□□ -1.35
VPS41-210ENST00000462429 TIAF1O95411 115 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 NOS3P29474 1203 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 ERVK-24P63145 666 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 KCNMA1Q12791 1236 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 INPP5AQ14642 412 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 LRFN4Q6PJG9 635 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 Q6ZS46 218 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 REC114Q7Z4M0 266 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 SLC43A3Q8NBI5 491 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 RASGRP4Q8TDF6 673 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 ATXN3LQ9H3M9 355 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 PICK1Q9NRD5 415 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 CRIM1Q9NZV1 1036 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 PPP1R9AQ9ULJ8 1098 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 TACC3Q9Y6A5 838 aa6.64□□□□□ -1.35
VPS41-210ENST00000462429 DCDC2CA8MYV0 355 aa6.63□□□□□ -1.35
VPS41-210ENST00000462429 GAS2O43903 313 aaKnown RBP6.63□□□□□ -1.35
VPS41-210ENST00000462429 COL9A2Q14055 689 aaPredicted RBP6.63□□□□□ -1.35
VPS41-210ENST00000462429 SEZ6Q53EL9 994 aa6.63□□□□□ -1.35
VPS41-210ENST00000462429 DYMQ7RTS9 669 aa6.63□□□□□ -1.35
VPS41-210ENST00000462429 FBXO27Q8NI29 283 aa6.63□□□□□ -1.35
VPS41-210ENST00000462429 GFRA2O00451 464 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 DRD2P14416 443 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 CHRNA4P43681 627 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 CRKP46108 304 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 PREPP48147 710 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 ZNF165P49910 485 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 RASSF7Q02833 373 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 ARID5AQ03989 594 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 PDE4BQ07343 736 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 UVSSAQ2YD98 709 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 CYFIP1Q7L576 1253 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 C12orf40Q86WS4 652 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 SLITRK4Q8IW52 837 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 SEC16BQ96JE7 1060 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 FANCD2OSQ96PS1 177 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 PIDD1Q9HB75 910 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 HIF3AQ9Y2N7 669 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 CSADQ9Y600 493 aa6.62□□□□□ -1.35
VPS41-210ENST00000462429 PRAMEF27A3QJZ7 478 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 C1QTNF9BB2RNN3 333 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 FANCGO15287 622 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 MCM4P33991 863 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 ASPAP45381 313 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 CDK8P49336 464 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 USP11P51784 963 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 CD163Q86VB7 1156 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 C2CD4AQ8NCU7 369 aaPredicted RBP6.61□□□□□ -1.35
VPS41-210ENST00000462429 RNF214Q8ND24 703 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 YIPF2Q9BWQ6 316 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 BRMS1Q9HCU9 246 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 DISC1Q9NRI5 854 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 ACTL7BQ9Y614 415 aa6.61□□□□□ -1.35
VPS41-210ENST00000462429 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.6□□□□□ -1.35
VPS41-210ENST00000462429 ATF4P18848 351 aaPredicted RBP6.6□□□□□ -1.35
VPS41-210ENST00000462429 DNAJA1P31689 397 aaKnown RBP6.6□□□□□ -1.35
VPS41-210ENST00000462429 RING1Q06587 406 aa6.6□□□□□ -1.35
VPS41-210ENST00000462429 SF3A1Q15459 793 aaKnown RBP6.6□□□□□ -1.35
VPS41-210ENST00000462429 PPM1JQ5JR12 505 aa6.6□□□□□ -1.35
VPS41-210ENST00000462429 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.6□□□□□ -1.35
VPS41-210ENST00000462429 DZIP1LQ8IYY4 767 aaKnown RBP6.6□□□□□ -1.35
VPS41-210ENST00000462429 REXO1Q8N1G1 1221 aaKnown RBP6.6□□□□□ -1.35
VPS41-210ENST00000462429 FAM46AQ96IP4 442 aaKnown RBP6.6□□□□□ -1.35
VPS41-210ENST00000462429 MEGF10Q96KG7 1140 aa6.6□□□□□ -1.35
VPS41-210ENST00000462429 UBL7Q96S82 380 aaPredicted RBP6.6□□□□□ -1.35
VPS41-210ENST00000462429 WNT10AQ9GZT5 417 aa6.6□□□□□ -1.35
VPS41-210ENST00000462429 GSX1Q9H4S2 264 aaPredicted RBP6.6□□□□□ -1.35
VPS41-210ENST00000462429 GINM1Q9NU53 330 aa6.6□□□□□ -1.35
VPS41-210ENST00000462429 EFR3BQ9Y2G0 817 aa6.6□□□□□ -1.35
VPS41-210ENST00000462429 GDF11O95390 407 aa6.59□□□□□ -1.35
VPS41-210ENST00000462429 GATA4P43694 442 aa6.59□□□□□ -1.35
VPS41-210ENST00000462429 SOX9P48436 509 aa6.59□□□□□ -1.35
VPS41-210ENST00000462429 NASPP49321 788 aaPredicted RBP6.59□□□□□ -1.35
VPS41-210ENST00000462429 ETF1P62495 437 aaKnown RBP6.59□□□□□ -1.35
VPS41-210ENST00000462429 MLECQ14165 292 aa6.59□□□□□ -1.35
VPS41-210ENST00000462429 TTLL4Q14679 1199 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms