RNA–Protein interactions for RNA: ENST00000462276.1

RTF1-202, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-202ENST00000462276 MCM9Q9NXL9 1143 aa12.69□□□□□ -0.38
RTF1-202ENST00000462276 ZNF70Q9UC06 446 aaPredicted RBP12.69□□□□□ -0.38
RTF1-202ENST00000462276 HACL1Q9UJ83 578 aa12.69□□□□□ -0.38
RTF1-202ENST00000462276 DOCK2Q92608 1830 aa12.68□□□□□ -0.38
RTF1-202ENST00000462276 USP17L12C9JPN9 530 aa12.68□□□□□ -0.38
RTF1-202ENST00000462276 USP17L21D6R901 530 aa12.68□□□□□ -0.38
RTF1-202ENST00000462276 CYP21A2P08686 494 aa12.68□□□□□ -0.38
RTF1-202ENST00000462276 C1QTNF8P60827 252 aa12.68□□□□□ -0.38
RTF1-202ENST00000462276 CTR9Q6PD62 1173 aa12.68□□□□□ -0.38
RTF1-202ENST00000462276 USP50Q70EL3 339 aaPredicted RBP12.68□□□□□ -0.38
RTF1-202ENST00000462276 PNMA8AQ86V59 439 aaPredicted RBP12.68□□□□□ -0.38
RTF1-202ENST00000462276 TDRD3Q9H7E2 651 aaKnown RBP12.68□□□□□ -0.38
RTF1-202ENST00000462276 CNNM2Q9H8M5 875 aa12.68□□□□□ -0.38
RTF1-202ENST00000462276 EPB41L4AQ9HCS5 686 aaPredicted RBP12.68□□□□□ -0.38
RTF1-202ENST00000462276 SCN9AQ15858 1988 aa12.68□□□□□ -0.38
RTF1-202ENST00000462276 FLT1P17948 1338 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 POLR3DP05423 398 aaPredicted RBP12.67□□□□□ -0.38
RTF1-202ENST00000462276 HLA-DOAP06340 250 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 EPS15P42566 896 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 PPARAQ07869 468 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 TRDNQ13061 729 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 RABEP1Q15276 862 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 C12orf60Q5U649 245 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 SAMD7Q7Z3H4 446 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 APOBEC3FQ8IUX4 373 aaKnown RBP12.67□□□□□ -0.38
RTF1-202ENST00000462276 FOXP4Q8IVH2 680 aaPredicted RBP12.67□□□□□ -0.38
RTF1-202ENST00000462276 MAPKAPK5Q8IW41 473 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 FAM151AQ8WW52 585 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 OSBPL5Q9H0X9 879 aaPredicted RBP12.67□□□□□ -0.38
RTF1-202ENST00000462276 PI4KBQ9UBF8 816 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 PPP2R3BQ9Y5P8 575 aa12.67□□□□□ -0.38
RTF1-202ENST00000462276 PITPNM2Q9BZ72 1349 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 FGRP09769 529 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 PDE4BQ07343 736 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 NBPF9Q3BBW0 867 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 TBC1D10BQ4KMP7 808 aaPredicted RBP12.66□□□□□ -0.38
RTF1-202ENST00000462276 AKNAD1Q5T1N1 836 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 RBM26Q5T8P6 1007 aaKnown RBP12.66□□□□□ -0.38
RTF1-202ENST00000462276 MFSD6Q6ZSS7 791 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 STAG1Q8WVM7 1258 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 HOOK2Q96ED9 719 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 KRT23Q9C075 422 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 EHD4Q9H223 541 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 FAM198AQ9UFP1 575 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 SNX14Q9Y5W7 946 aa12.66□□□□□ -0.38
RTF1-202ENST00000462276 COL2A1P02458 1487 aaPredicted RBP12.65□□□□□ -0.38
RTF1-202ENST00000462276 MINDY4BA8MYZ0 360 aa12.65□□□□□ -0.38
RTF1-202ENST00000462276 VEGFAP15692 232 aaPredicted RBP12.65□□□□□ -0.38
RTF1-202ENST00000462276 EPHX2P34913 555 aa12.65□□□□□ -0.38
RTF1-202ENST00000462276 NFIAQ12857 509 aa12.65□□□□□ -0.38
RTF1-202ENST00000462276 RASEFQ8IZ41 740 aa12.65□□□□□ -0.38
RTF1-202ENST00000462276 NEK1Q96PY6 1258 aa12.65□□□□□ -0.38
RTF1-202ENST00000462276 MTA3Q9BTC8 594 aa12.65□□□□□ -0.38
RTF1-202ENST00000462276 SWAP70Q9UH65 585 aa12.65□□□□□ -0.38
RTF1-202ENST00000462276 MAST2Q6P0Q8 1798 aa12.65□□□□□ -0.38
RTF1-202ENST00000462276 ATRNL1Q5VV63 1379 aa12.65□□□□□ -0.38
RTF1-202ENST00000462276 MYH13Q9UKX3 1938 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 SHTN1A0MZ66 631 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 E7EWF7 191 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 ORC4O43929 436 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 PICALMQ13492 652 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 RALYLQ86SE5 291 aaKnown RBP12.64□□□□□ -0.39
RTF1-202ENST00000462276 METTL16Q86W50 562 aaKnown RBP12.64□□□□□ -0.39
RTF1-202ENST00000462276 ZSCAN29Q8IWY8 852 aaPredicted RBP12.64□□□□□ -0.39
RTF1-202ENST00000462276 NCOA7Q8NI08 942 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 TAF1DQ9H5J8 278 aaPredicted RBP12.64□□□□□ -0.39
RTF1-202ENST00000462276 VEZTQ9HBM0 779 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 ZSWIM6Q9HCJ5 1215 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 DDX4Q9NQI0 724 aaKnown RBP12.64□□□□□ -0.39
RTF1-202ENST00000462276 PGAP2Q9UHJ9 254 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 HERC5Q9UII4 1024 aaKnown RBP12.64□□□□□ -0.39
RTF1-202ENST00000462276 SERPINB13Q9UIV8 391 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 PALD1Q9ULE6 856 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 PCDHAC2Q9Y5I4 1007 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 CYP46A1Q9Y6A2 500 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 PSME4Q14997 1843 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 AK9Q5TCS8 1911 aa12.64□□□□□ -0.39
RTF1-202ENST00000462276 WDR19Q8NEZ3 1342 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 DICER1Q9UPY3 1922 aaKnown RBP12.63□□□□□ -0.39
RTF1-202ENST00000462276 CLRN2A0PK11 232 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 TCP10L2B9ZVM9 353 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 ST18O60284 1047 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 TBC1D12O60347 775 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 MCM2P49736 904 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 HAND2P61296 217 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 CCDC178Q5BJE1 867 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 BLOC1S2Q6QNY1 142 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 C16orf86Q6ZW13 317 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 DHX32Q7L7V1 743 aaKnown RBP12.63□□□□□ -0.39
RTF1-202ENST00000462276 TRPM4Q8TD43 1214 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 ESR2Q92731 530 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 DCPSQ96C86 337 aaKnown RBP12.63□□□□□ -0.39
RTF1-202ENST00000462276 JAKMIP1Q96N16 626 aaKnown RBP12.63□□□□□ -0.39
RTF1-202ENST00000462276 KIF2CQ99661 725 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 DEFB129Q9H1M3 183 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 TSHZ2Q9NRE2 1034 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 SAP30BPQ9UHR5 308 aaKnown RBP12.63□□□□□ -0.39
RTF1-202ENST00000462276 ROBO3Q96MS0 1386 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 SBF1O95248 1867 aa12.63□□□□□ -0.39
RTF1-202ENST00000462276 CCDC88AQ3V6T2 1871 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms