RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 ZSWIM8A7E2V4 1837 aa17.13■□□□□ 0.33
USP4-206ENST00000461553 IRF6O14896 467 aa17.13■□□□□ 0.33
USP4-206ENST00000461553 LDHCP07864 332 aa17.13■□□□□ 0.33
USP4-206ENST00000461553 INPP5BP32019 993 aa17.13■□□□□ 0.33
USP4-206ENST00000461553 SOX10P56693 466 aa17.13■□□□□ 0.33
USP4-206ENST00000461553 PPATQ06203 517 aa17.13■□□□□ 0.33
USP4-206ENST00000461553 CEP85Q6P2H3 762 aa17.13■□□□□ 0.33
USP4-206ENST00000461553 DBNDD2Q9BQY9 259 aa17.13■□□□□ 0.33
USP4-206ENST00000461553 ZFYVE28Q9HCC9 887 aa17.13■□□□□ 0.33
USP4-206ENST00000461553 TRIM17Q9Y577 477 aa17.13■□□□□ 0.33
USP4-206ENST00000461553 COL2A1P02458 1487 aaPredicted RBP17.12■□□□□ 0.33
USP4-206ENST00000461553 RGS19P49795 217 aa17.12■□□□□ 0.33
USP4-206ENST00000461553 NOL9Q5SY16 702 aaKnown RBP17.12■□□□□ 0.33
USP4-206ENST00000461553 TBC1D9Q6ZT07 1266 aa17.12■□□□□ 0.33
USP4-206ENST00000461553 NSUN4Q96CB9 384 aaKnown RBP17.12■□□□□ 0.33
USP4-206ENST00000461553 NOL10Q9BSC4 688 aaKnown RBP17.12■□□□□ 0.33
USP4-206ENST00000461553 ZCCHC17Q9NP64 241 aaKnown RBP17.12■□□□□ 0.33
USP4-206ENST00000461553 LRP2BPQ9P2M1 347 aa17.12■□□□□ 0.33
USP4-206ENST00000461553 ZNF112Q9UJU3 913 aa17.12■□□□□ 0.33
USP4-206ENST00000461553 NOP58Q9Y2X3 529 aaKnown RBP17.12■□□□□ 0.33
USP4-206ENST00000461553 CENPFP49454 3210 aa17.12■□□□□ 0.33
USP4-206ENST00000461553 SIPA1L1O43166 1804 aa17.12■□□□□ 0.33
USP4-206ENST00000461553 GPR75-ASB3A0A0A6YYF3 556 aa17.11■□□□□ 0.33
USP4-206ENST00000461553 SP3Q02447 781 aa17.11■□□□□ 0.33
USP4-206ENST00000461553 ERC1Q8IUD2 1116 aa17.11■□□□□ 0.33
USP4-206ENST00000461553 ZFPM1Q8IX07 1006 aa17.11■□□□□ 0.33
USP4-206ENST00000461553 FAM43AQ8N2R8 423 aa17.11■□□□□ 0.33
USP4-206ENST00000461553 CD99L2Q8TCZ2 262 aa17.11■□□□□ 0.33
USP4-206ENST00000461553 MYH1P12882 1939 aa17.11■□□□□ 0.33
USP4-206ENST00000461553 MGAMO43451 1857 aa17.1■□□□□ 0.33
USP4-206ENST00000461553 MAP4K4O95819 1239 aaPredicted RBP17.1■□□□□ 0.33
USP4-206ENST00000461553 OTOP1Q7RTM1 612 aa17.1■□□□□ 0.33
USP4-206ENST00000461553 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.1■□□□□ 0.33
USP4-206ENST00000461553 ZNF384Q8TF68 577 aa17.1■□□□□ 0.33
USP4-206ENST00000461553 DDX4Q9NQI0 724 aaKnown RBP17.1■□□□□ 0.33
USP4-206ENST00000461553 TNRC18O15417 2968 aaPredicted RBP17.09■□□□□ 0.33
USP4-206ENST00000461553 BTBD19C9JJ37 291 aa17.09■□□□□ 0.33
USP4-206ENST00000461553 RHBDL3P58872 404 aa17.09■□□□□ 0.33
USP4-206ENST00000461553 NAA16Q6N069 864 aaPredicted RBP17.09■□□□□ 0.33
USP4-206ENST00000461553 SCYL3Q8IZE3 742 aa17.09■□□□□ 0.33
USP4-206ENST00000461553 PICK1Q9NRD5 415 aa17.09■□□□□ 0.33
USP4-206ENST00000461553 SNRKQ9NRH2 765 aa17.09■□□□□ 0.33
USP4-206ENST00000461553 DBNLQ9UJU6 430 aaKnown RBP17.09■□□□□ 0.33
USP4-206ENST00000461553 DDX19BQ9UMR2 479 aa17.09■□□□□ 0.33
USP4-206ENST00000461553 KIAA0100Q14667 2235 aaKnown RBP17.08■□□□□ 0.33
USP4-206ENST00000461553 NAV1Q8NEY1 1877 aa17.08■□□□□ 0.33
USP4-206ENST00000461553 LOC285556D6RIA3 1793 aa17.08■□□□□ 0.33
USP4-206ENST00000461553 DDTLA6NHG4 134 aaPredicted RBP17.08■□□□□ 0.32
USP4-206ENST00000461553 NPM3O75607 178 aaKnown RBP17.08■□□□□ 0.32
USP4-206ENST00000461553 SH3BP5LQ7L8J4 393 aa17.08■□□□□ 0.32
USP4-206ENST00000461553 ZNF512BQ96KM6 892 aaPredicted RBP17.08■□□□□ 0.32
USP4-206ENST00000461553 EFCC1Q9HA90 598 aa17.08■□□□□ 0.32
USP4-206ENST00000461553 TLR7Q9NYK1 1049 aaKnown RBP17.08■□□□□ 0.32
USP4-206ENST00000461553 KCNH4Q9UQ05 1017 aa17.08■□□□□ 0.32
USP4-206ENST00000461553 EXOC6BQ9Y2D4 811 aa17.08■□□□□ 0.32
USP4-206ENST00000461553 MYH7P12883 1935 aa17.08■□□□□ 0.32
USP4-206ENST00000461553 ARHGEF6Q15052 776 aa17.07■□□□□ 0.32
USP4-206ENST00000461553 HSP90AB4PQ58FF6 505 aa17.07■□□□□ 0.32
USP4-206ENST00000461553 TEX11Q8IYF3 940 aa17.07■□□□□ 0.32
USP4-206ENST00000461553 CCDC8Q9H0W5 538 aaPredicted RBP17.07■□□□□ 0.32
USP4-206ENST00000461553 OSBPL5Q9H0X9 879 aaPredicted RBP17.07■□□□□ 0.32
USP4-206ENST00000461553 RCAN3Q9UKA8 241 aa17.07■□□□□ 0.32
USP4-206ENST00000461553 TLR2O60603 784 aa17.06■□□□□ 0.32
USP4-206ENST00000461553 IGSF3O75054 1194 aa17.06■□□□□ 0.32
USP4-206ENST00000461553 HMMRO75330 724 aa17.06■□□□□ 0.32
USP4-206ENST00000461553 BAG3O95817 575 aa17.06■□□□□ 0.32
USP4-206ENST00000461553 PLCG2P16885 1265 aa17.06■□□□□ 0.32
USP4-206ENST00000461553 ANKRD23Q86SG2 305 aa17.06■□□□□ 0.32
USP4-206ENST00000461553 EAF2Q96CJ1 260 aaPredicted RBP17.06■□□□□ 0.32
USP4-206ENST00000461553 CHMP4BQ9H444 224 aaKnown RBP17.06■□□□□ 0.32
USP4-206ENST00000461553 AATFQ9NY61 560 aaKnown RBP eCLIP17.06■□□□□ 0.32
USP4-206ENST00000461553 COG6Q9Y2V7 657 aa17.06■□□□□ 0.32
USP4-206ENST00000461553 PHF20L1A8MW92 1017 aa17.05■□□□□ 0.32
USP4-206ENST00000461553 CYP2E1P05181 493 aaPredicted RBP17.05■□□□□ 0.32
USP4-206ENST00000461553 ZAP70P43403 619 aa17.05■□□□□ 0.32
USP4-206ENST00000461553 KIF22Q14807 665 aa17.05■□□□□ 0.32
USP4-206ENST00000461553 AACSQ86V21 672 aa17.05■□□□□ 0.32
USP4-206ENST00000461553 PTPN22Q9Y2R2 807 aa17.05■□□□□ 0.32
USP4-206ENST00000461553 PDHXO00330 501 aa17.04■□□□□ 0.32
USP4-206ENST00000461553 CXCL11O14625 94 aa17.04■□□□□ 0.32
USP4-206ENST00000461553 CTNND1O60716 968 aaKnown RBP17.04■□□□□ 0.32
USP4-206ENST00000461553 PTPRAP18433 802 aa17.04■□□□□ 0.32
USP4-206ENST00000461553 MAP3K10Q02779 954 aa17.04■□□□□ 0.32
USP4-206ENST00000461553 SH3RF3Q8TEJ3 882 aaPredicted RBP17.04■□□□□ 0.32
USP4-206ENST00000461553 PARK7Q99497 189 aaKnown RBP17.04■□□□□ 0.32
USP4-206ENST00000461553 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.04■□□□□ 0.32
USP4-206ENST00000461553 BRCA2P51587 3418 aa17.04■□□□□ 0.32
USP4-206ENST00000461553 DDX60LQ5H9U9 1706 aaKnown RBP17.04■□□□□ 0.32
USP4-206ENST00000461553 MYH8P13535 1937 aa17.04■□□□□ 0.32
USP4-206ENST00000461553 TBC1D12O60347 775 aa17.03■□□□□ 0.32
USP4-206ENST00000461553 RPAP2Q8IXW5 612 aaPredicted RBP17.03■□□□□ 0.32
USP4-206ENST00000461553 PIH1D3Q9NQM4 214 aaKnown RBP17.03■□□□□ 0.32
USP4-206ENST00000461553 ZHX2Q9Y6X8 837 aa17.03■□□□□ 0.32
USP4-206ENST00000461553 FLT1P17948 1338 aa17.02■□□□□ 0.32
USP4-206ENST00000461553 A0A0G2JLL6 359 aaPredicted RBP17.02■□□□□ 0.32
USP4-206ENST00000461553 FAM196BA6NMK8 535 aa17.02■□□□□ 0.32
USP4-206ENST00000461553 IDH1O75874 414 aaKnown RBP17.02■□□□□ 0.32
USP4-206ENST00000461553 SLURP2P0DP57 97 aa17.02■□□□□ 0.32
USP4-206ENST00000461553 LACTBP83111 547 aaPredicted RBP17.02■□□□□ 0.32
USP4-206ENST00000461553 FASTKD5Q7L8L6 764 aaKnown RBP17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms