RNA–Protein interactions for RNA: ENST00000461328.1

VARS-219, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-219ENST00000461328 ZFPM1Q8IX07 1006 aa18.81■□□□□ 0.6
VARS-219ENST00000461328 NSUN4Q96CB9 384 aaKnown RBP18.81■□□□□ 0.6
VARS-219ENST00000461328 RFX7Q2KHR2 1363 aa18.81■□□□□ 0.6
VARS-219ENST00000461328 AK9Q5TCS8 1911 aa18.8■□□□□ 0.6
VARS-219ENST00000461328 TESPA1A2RU30 521 aaPredicted RBP18.8■□□□□ 0.6
VARS-219ENST00000461328 IFIT2P09913 472 aaKnown RBP18.8■□□□□ 0.6
VARS-219ENST00000461328 INPP5BP32019 993 aa18.8■□□□□ 0.6
VARS-219ENST00000461328 GTF2A2P52657 109 aa18.8■□□□□ 0.6
VARS-219ENST00000461328 PICALMQ13492 652 aa18.8■□□□□ 0.6
VARS-219ENST00000461328 ZNF384Q8TF68 577 aa18.8■□□□□ 0.6
VARS-219ENST00000461328 MS4A4AQ96JQ5 239 aa18.8■□□□□ 0.6
VARS-219ENST00000461328 ZNF512BQ96KM6 892 aaPredicted RBP18.8■□□□□ 0.6
VARS-219ENST00000461328 R3HDMLQ9H3Y0 253 aa18.8■□□□□ 0.6
VARS-219ENST00000461328 CCL15-CCL14A0A0B4J2E2 113 aa18.79■□□□□ 0.6
VARS-219ENST00000461328 FKTNO75072 461 aa18.79■□□□□ 0.6
VARS-219ENST00000461328 WDHD1O75717 1129 aaPredicted RBP18.79■□□□□ 0.6
VARS-219ENST00000461328 CCL15Q16663 113 aa18.79■□□□□ 0.6
VARS-219ENST00000461328 PTPN18Q99952 460 aa18.79■□□□□ 0.6
VARS-219ENST00000461328 NOL10Q9BSC4 688 aaKnown RBP18.79■□□□□ 0.6
VARS-219ENST00000461328 ZAP70P43403 619 aa18.78■□□□□ 0.6
VARS-219ENST00000461328 RHBDL3P58872 404 aa18.78■□□□□ 0.6
VARS-219ENST00000461328 NAA16Q6N069 864 aaPredicted RBP18.78■□□□□ 0.6
VARS-219ENST00000461328 BRI3BPQ8WY22 251 aa18.78■□□□□ 0.6
VARS-219ENST00000461328 DDX4Q9NQI0 724 aaKnown RBP18.78■□□□□ 0.6
VARS-219ENST00000461328 ZNF112Q9UJU3 913 aa18.78■□□□□ 0.6
VARS-219ENST00000461328 MAP4K4O95819 1239 aaPredicted RBP18.77■□□□□ 0.6
VARS-219ENST00000461328 CYP2E1P05181 493 aaPredicted RBP18.77■□□□□ 0.6
VARS-219ENST00000461328 CRHR2Q13324 411 aa18.77■□□□□ 0.6
VARS-219ENST00000461328 PPIL2Q13356 520 aa18.77■□□□□ 0.6
VARS-219ENST00000461328 DOCK2Q92608 1830 aa18.77■□□□□ 0.59
VARS-219ENST00000461328 MAST2Q6P0Q8 1798 aa18.76■□□□□ 0.59
VARS-219ENST00000461328 IRF6O14896 467 aa18.76■□□□□ 0.59
VARS-219ENST00000461328 CETPP11597 493 aa18.76■□□□□ 0.59
VARS-219ENST00000461328 PPATQ06203 517 aa18.76■□□□□ 0.59
VARS-219ENST00000461328 SNAPC2Q13487 334 aa18.76■□□□□ 0.59
VARS-219ENST00000461328 SH3BP5LQ7L8J4 393 aa18.76■□□□□ 0.59
VARS-219ENST00000461328 CRBNQ96SW2 442 aa18.76■□□□□ 0.59
VARS-219ENST00000461328 ATRNL1Q5VV63 1379 aa18.76■□□□□ 0.59
VARS-219ENST00000461328 DDTLA6NHG4 134 aaPredicted RBP18.75■□□□□ 0.59
VARS-219ENST00000461328 IDH1O75874 414 aaKnown RBP18.75■□□□□ 0.59
VARS-219ENST00000461328 BAG3O95817 575 aa18.75■□□□□ 0.59
VARS-219ENST00000461328 PKN2Q16513 984 aaKnown RBP18.75■□□□□ 0.59
VARS-219ENST00000461328 LRRCC1Q9C099 1032 aa18.75■□□□□ 0.59
VARS-219ENST00000461328 PIH1D3Q9NQM4 214 aaKnown RBP18.75■□□□□ 0.59
VARS-219ENST00000461328 NDUFB9Q9Y6M9 179 aa18.75■□□□□ 0.59
VARS-219ENST00000461328 NPM3O75607 178 aaKnown RBP18.74■□□□□ 0.59
VARS-219ENST00000461328 TAF1CQ15572 869 aaPredicted RBP18.74■□□□□ 0.59
VARS-219ENST00000461328 NOL9Q5SY16 702 aaKnown RBP18.74■□□□□ 0.59
VARS-219ENST00000461328 TEX11Q8IYF3 940 aa18.74■□□□□ 0.59
VARS-219ENST00000461328 AATFQ9NY61 560 aaKnown RBP eCLIP18.74■□□□□ 0.59
VARS-219ENST00000461328 IGSF3O75054 1194 aa18.73■□□□□ 0.59
VARS-219ENST00000461328 PLCG2P16885 1265 aa18.73■□□□□ 0.59
VARS-219ENST00000461328 FAM43AQ8N2R8 423 aa18.73■□□□□ 0.59
VARS-219ENST00000461328 SH3RF3Q8TEJ3 882 aaPredicted RBP18.73■□□□□ 0.59
VARS-219ENST00000461328 DNAJC2Q99543 621 aaKnown RBP18.73■□□□□ 0.59
VARS-219ENST00000461328 OSBPL5Q9H0X9 879 aaPredicted RBP18.73■□□□□ 0.59
VARS-219ENST00000461328 ZFYVE28Q9HCC9 887 aa18.73■□□□□ 0.59
VARS-219ENST00000461328 PHF20L1A8MW92 1017 aa18.72■□□□□ 0.59
VARS-219ENST00000461328 SCYL3Q8IZE3 742 aa18.72■□□□□ 0.59
VARS-219ENST00000461328 ERO1AQ96HE7 468 aa18.72■□□□□ 0.59
VARS-219ENST00000461328 PICK1Q9NRD5 415 aa18.72■□□□□ 0.59
VARS-219ENST00000461328 COL2A1P02458 1487 aaPredicted RBP18.71■□□□□ 0.59
VARS-219ENST00000461328 BTBD19C9JJ37 291 aa18.71■□□□□ 0.59
VARS-219ENST00000461328 SMARCA5O60264 1052 aaPredicted RBP18.71■□□□□ 0.59
VARS-219ENST00000461328 SLURP2P0DP57 97 aa18.71■□□□□ 0.59
VARS-219ENST00000461328 CYP7A1P22680 504 aa18.71■□□□□ 0.59
VARS-219ENST00000461328 PPP4CP60510 307 aa18.71■□□□□ 0.59
VARS-219ENST00000461328 MAP3K10Q02779 954 aa18.71■□□□□ 0.59
VARS-219ENST00000461328 MAP3K12Q12852 859 aa18.71■□□□□ 0.59
VARS-219ENST00000461328 ADGRA1Q86SQ6 560 aa18.71■□□□□ 0.59
VARS-219ENST00000461328 ZCCHC17Q9NP64 241 aaKnown RBP18.71■□□□□ 0.59
VARS-219ENST00000461328 HPS5Q9UPZ3 1129 aa18.71■□□□□ 0.59
VARS-219ENST00000461328 SP3Q02447 781 aa18.7■□□□□ 0.58
VARS-219ENST00000461328 TTF1Q15361 905 aaPredicted RBP18.7■□□□□ 0.58
VARS-219ENST00000461328 FBXO46Q6PJ61 603 aaPredicted RBP18.7■□□□□ 0.58
VARS-219ENST00000461328 MAGEB6Q8N7X4 407 aa18.7■□□□□ 0.58
VARS-219ENST00000461328 ANTXR1Q9H6X2 564 aa18.7■□□□□ 0.58
VARS-219ENST00000461328 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.7■□□□□ 0.58
VARS-219ENST00000461328 KCNH4Q9UQ05 1017 aa18.7■□□□□ 0.58
VARS-219ENST00000461328 TRIM17Q9Y577 477 aa18.7■□□□□ 0.58
VARS-219ENST00000461328 PCDHB15Q9Y5E8 787 aa18.7■□□□□ 0.58
VARS-219ENST00000461328 FAM196BA6NMK8 535 aa18.69■□□□□ 0.58
VARS-219ENST00000461328 GOLIM4O00461 696 aa18.69■□□□□ 0.58
VARS-219ENST00000461328 TBC1D12O60347 775 aa18.69■□□□□ 0.58
VARS-219ENST00000461328 CTNND1O60716 968 aaKnown RBP18.69■□□□□ 0.58
VARS-219ENST00000461328 CD99L2Q8TCZ2 262 aa18.69■□□□□ 0.58
VARS-219ENST00000461328 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.69■□□□□ 0.58
VARS-219ENST00000461328 DCTPP1Q9H773 170 aa18.69■□□□□ 0.58
VARS-219ENST00000461328 ZHX2Q9Y6X8 837 aa18.69■□□□□ 0.58
VARS-219ENST00000461328 CXCL11O14625 94 aa18.68■□□□□ 0.58
VARS-219ENST00000461328 PTPRAP18433 802 aa18.68■□□□□ 0.58
VARS-219ENST00000461328 ANKRD23Q86SG2 305 aa18.68■□□□□ 0.58
VARS-219ENST00000461328 MAPKAPK5Q8IW41 473 aa18.68■□□□□ 0.58
VARS-219ENST00000461328 TGFBRAP1Q8WUH2 860 aa18.68■□□□□ 0.58
VARS-219ENST00000461328 GPATCH3Q96I76 525 aa18.68■□□□□ 0.58
VARS-219ENST00000461328 BOLA2Q9H3K6 86 aa18.68■□□□□ 0.58
VARS-219ENST00000461328 MYO5AQ9Y4I1 1855 aaKnown RBP18.68■□□□□ 0.58
VARS-219ENST00000461328 DYNLL1P63167 89 aaKnown RBP18.67■□□□□ 0.58
VARS-219ENST00000461328 OTOP1Q7RTM1 612 aa18.67■□□□□ 0.58
VARS-219ENST00000461328 MIGA1Q8NAN2 632 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms