RNA–Protein interactions for RNA: ENST00000460940.5

APTX-209, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,874 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-209	ENST00000460940	EVI5L	Q96CN4	794 aa		13.36	□□□□□ -0.27
APTX-209	ENST00000460940	MAGEB6P1	A0A0J9YX57	407 aa		13.36	□□□□□ -0.27
APTX-209	ENST00000460940	PPP1R12B	O60237	982 aa	Predicted RBP	13.36	□□□□□ -0.27
APTX-209	ENST00000460940	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.36	□□□□□ -0.27
APTX-209	ENST00000460940	MIGA1	Q8NAN2	632 aa		13.36	□□□□□ -0.27
APTX-209	ENST00000460940	RIOK1	Q9BRS2	568 aa	Known RBP	13.36	□□□□□ -0.27
APTX-209	ENST00000460940	FSD1	Q9BTV5	496 aa		13.36	□□□□□ -0.27
APTX-209	ENST00000460940	ATRNL1	Q5VV63	1379 aa		13.36	□□□□□ -0.27
APTX-209	ENST00000460940	UNCX	A6NJT0	531 aa		13.35	□□□□□ -0.27
APTX-209	ENST00000460940	TCP10	Q12799	353 aa		13.35	□□□□□ -0.27
APTX-209	ENST00000460940	PICALM	Q13492	652 aa		13.35	□□□□□ -0.27
APTX-209	ENST00000460940	TTLL12	Q14166	644 aa	Predicted RBP	13.35	□□□□□ -0.27
APTX-209	ENST00000460940	MAP3K11	Q16584	847 aa		13.35	□□□□□ -0.27
APTX-209	ENST00000460940	DDX4	Q9NQI0	724 aa	Known RBP	13.35	□□□□□ -0.27
APTX-209	ENST00000460940	RNF113A	O15541	343 aa	Known RBP	13.34	□□□□□ -0.27
APTX-209	ENST00000460940	PDE4A	P27815	886 aa		13.34	□□□□□ -0.27
APTX-209	ENST00000460940	HUNK	P57058	714 aa		13.34	□□□□□ -0.27
APTX-209	ENST00000460940	DYNLL1	P63167	89 aa	Known RBP	13.34	□□□□□ -0.27
APTX-209	ENST00000460940	DCAF15	Q66K64	600 aa		13.34	□□□□□ -0.27
APTX-209	ENST00000460940	APPBP2	Q92624	585 aa		13.34	□□□□□ -0.27
APTX-209	ENST00000460940	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.34	□□□□□ -0.27
APTX-209	ENST00000460940	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.34	□□□□□ -0.27
APTX-209	ENST00000460940	FLT1	P17948	1338 aa		13.34	□□□□□ -0.27
APTX-209	ENST00000460940	FOCAD	Q5VW36	1801 aa		13.34	□□□□□ -0.27
APTX-209	ENST00000460940	IREB2	P48200	963 aa	Known RBP	13.33	□□□□□ -0.27
APTX-209	ENST00000460940	HTRA3	P83110	453 aa		13.33	□□□□□ -0.27
APTX-209	ENST00000460940	CDAN1	Q8IWY9	1227 aa		13.33	□□□□□ -0.27
APTX-209	ENST00000460940	DEFB115	Q30KQ5	88 aa		13.33	□□□□□ -0.28
APTX-209	ENST00000460940	GLIPR1L2	Q4G1C9	344 aa		13.33	□□□□□ -0.28
APTX-209	ENST00000460940	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.33	□□□□□ -0.28
APTX-209	ENST00000460940	AIDA	Q96BJ3	306 aa		13.33	□□□□□ -0.28
APTX-209	ENST00000460940	CSRNP1	Q96S65	589 aa		13.33	□□□□□ -0.28
APTX-209	ENST00000460940	DHX36	Q9H2U1	1008 aa	Known RBP	13.33	□□□□□ -0.28
APTX-209	ENST00000460940	ANGEL1	Q9UNK9	670 aa	Known RBP	13.33	□□□□□ -0.28
APTX-209	ENST00000460940	MBD4	O95243	580 aa		13.32	□□□□□ -0.28
APTX-209	ENST00000460940	ECE1	P42892	770 aa		13.32	□□□□□ -0.28
APTX-209	ENST00000460940	USP5	P45974	858 aa		13.32	□□□□□ -0.28
APTX-209	ENST00000460940	MAPKAPK5	Q8IW41	473 aa		13.32	□□□□□ -0.28
APTX-209	ENST00000460940	ZFPM1	Q8IX07	1006 aa		13.32	□□□□□ -0.28
APTX-209	ENST00000460940	FAM43A	Q8N2R8	423 aa		13.32	□□□□□ -0.28
APTX-209	ENST00000460940	TGFBRAP1	Q8WUH2	860 aa		13.32	□□□□□ -0.28
APTX-209	ENST00000460940	KLRG1	Q96E93	195 aa		13.32	□□□□□ -0.28
APTX-209	ENST00000460940	TRIM6-TRIM34	B2RNG4	842 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	GSE1	Q14687	1217 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	LDLRAD1	Q5T700	205 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	RGMB	Q6NW40	437 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	SH3BP5L	Q7L8J4	393 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	LCORL	Q8N3X6	602 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	ZNF341	Q9BYN7	854 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	MKRN1	Q9UHC7	482 aa	Known RBP	13.31	□□□□□ -0.28
APTX-209	ENST00000460940	CDK5RAP2	Q96SN8	1893 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	UBE2Q2L	H0YL09	131 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	USP2	O75604	605 aa	Predicted RBP	13.31	□□□□□ -0.28
APTX-209	ENST00000460940	PRKG1	Q13976	671 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	ZMYM1	Q5SVZ6	1142 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	TTC22	Q5TAA0	569 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	MOB2	Q70IA6	237 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	DNAJC5G	Q8N7S2	189 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	PUS7L	Q9H0K6	701 aa	Known RBP	13.31	□□□□□ -0.28
APTX-209	ENST00000460940	ARMT1	Q9H993	441 aa		13.31	□□□□□ -0.28
APTX-209	ENST00000460940	DDX60L	Q5H9U9	1706 aa	Known RBP	13.3	□□□□□ -0.28
APTX-209	ENST00000460940	THSD7B	Q9C0I4	1608 aa		13.3	□□□□□ -0.28
APTX-209	ENST00000460940	DDTL	A6NHG4	134 aa	Predicted RBP	13.3	□□□□□ -0.28
APTX-209	ENST00000460940	CHGB	P05060	677 aa		13.3	□□□□□ -0.28
APTX-209	ENST00000460940	MAP3K10	Q02779	954 aa		13.3	□□□□□ -0.28
APTX-209	ENST00000460940	SLFNL1	Q499Z3	407 aa		13.3	□□□□□ -0.28
APTX-209	ENST00000460940	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.3	□□□□□ -0.28
APTX-209	ENST00000460940	ANKRD13A	Q8IZ07	590 aa		13.3	□□□□□ -0.28
APTX-209	ENST00000460940	OSBP2	Q969R2	916 aa		13.3	□□□□□ -0.28
APTX-209	ENST00000460940	CCDC102A	Q96A19	550 aa		13.3	□□□□□ -0.28
APTX-209	ENST00000460940	CAPNS2	Q96L46	248 aa		13.3	□□□□□ -0.28
APTX-209	ENST00000460940	ATP8A2	Q9NTI2	1148 aa		13.3	□□□□□ -0.28
APTX-209	ENST00000460940	PI4KB	Q9UBF8	816 aa		13.3	□□□□□ -0.28
APTX-209	ENST00000460940	BRPF3	Q9ULD4	1205 aa		13.3	□□□□□ -0.28
APTX-209	ENST00000460940	TBC1D12	O60347	775 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	HLA-DOA	P06340	250 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	GNAT2	P19087	354 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	ZNF157	P51786	506 aa	Predicted RBP	13.29	□□□□□ -0.28
APTX-209	ENST00000460940	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.29	□□□□□ -0.28
APTX-209	ENST00000460940	RILPL2	Q969X0	211 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	DDRGK1	Q96HY6	314 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	HERC5	Q9UII4	1024 aa	Known RBP	13.29	□□□□□ -0.28
APTX-209	ENST00000460940	TAOK2	Q9UL54	1235 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	NAV1	Q8NEY1	1877 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	HIP1	O00291	1037 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	GPAA1	O43292	621 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	SLC10A3	P09131	477 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	VEGFB	P49765	207 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	MAP3K9	P80192	1104 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	WRNIP1	Q96S55	665 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	STRBP	Q96SI9	672 aa	Known RBP	13.29	□□□□□ -0.28
APTX-209	ENST00000460940	HELLS	Q9NRZ9	838 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	ZNF112	Q9UJU3	913 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	CSAD	Q9Y600	493 aa		13.29	□□□□□ -0.28
APTX-209	ENST00000460940	OTOF	Q9HC10	1997 aa		13.28	□□□□□ -0.28
APTX-209	ENST00000460940	WDR33	Q9C0J8	1336 aa	Known RBP	13.28	□□□□□ -0.28
APTX-209	ENST00000460940	CEP350	Q5VT06	3117 aa		13.28	□□□□□ -0.28
APTX-209	ENST00000460940	GSPT1	P15170	499 aa	Known RBP	13.28	□□□□□ -0.28
APTX-209	ENST00000460940	NOG	Q13253	232 aa		13.28	□□□□□ -0.28
APTX-209	ENST00000460940	CYP4F22	Q6NT55	531 aa		13.28	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms