RNA–Protein interactions for RNA: ENST00000456948.5

CBX3-204, Transcript of chromobox 3, humanhuman

TSL 5

Gene CBX3, Length 1,068 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-204ENST00000456948 ATP5JP18859 108 aa28.16■■■□□ 2.1
CBX3-204ENST00000456948 CYP7A1P22680 504 aa28.16■■■□□ 2.1
CBX3-204ENST00000456948 TM4SF4P48230 202 aa28.16■■■□□ 2.1
CBX3-204ENST00000456948 RHBDL3P58872 404 aa28.16■■■□□ 2.1
CBX3-204ENST00000456948 MIGA2Q7L4E1 593 aa28.16■■■□□ 2.1
CBX3-204ENST00000456948 DNAJC2Q99543 621 aaKnown RBP28.16■■■□□ 2.1
CBX3-204ENST00000456948 ELP3Q9H9T3 547 aa28.16■■■□□ 2.1
CBX3-204ENST00000456948 AATFQ9NY61 560 aaKnown RBP eCLIP28.16■■■□□ 2.1
CBX3-204ENST00000456948 PPP1R3FQ6ZSY5 799 aaPredicted RBP28.15■■■□□ 2.1
CBX3-204ENST00000456948 RNF186Q9NXI6 227 aa28.15■■■□□ 2.1
CBX3-204ENST00000456948 TRPA1O75762 1119 aa28.14■■■□□ 2.1
CBX3-204ENST00000456948 VGLL4Q14135 290 aa28.14■■■□□ 2.1
CBX3-204ENST00000456948 OTUD7BQ6GQQ9 843 aa28.14■■■□□ 2.1
CBX3-204ENST00000456948 MAGEB6Q8N7X4 407 aa28.14■■■□□ 2.1
CBX3-204ENST00000456948 SMARCA5O60264 1052 aaPredicted RBP28.13■■■□□ 2.09
CBX3-204ENST00000456948 ALDH1A1P00352 501 aa28.13■■■□□ 2.09
CBX3-204ENST00000456948 OPTNQ96CV9 577 aa28.13■■■□□ 2.09
CBX3-204ENST00000456948 CASP8AP2Q9UKL3 1982 aa28.13■■■□□ 2.09
CBX3-204ENST00000456948 GOLIM4O00461 696 aa28.12■■■□□ 2.09
CBX3-204ENST00000456948 ZFPM1Q8IX07 1006 aa28.12■■■□□ 2.09
CBX3-204ENST00000456948 SH3RF3Q8TEJ3 882 aaPredicted RBP28.12■■■□□ 2.09
CBX3-204ENST00000456948 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.12■■■□□ 2.09
CBX3-204ENST00000456948 BOLA2Q9H3K6 86 aa28.12■■■□□ 2.09
CBX3-204ENST00000456948 ANTXR1Q9H6X2 564 aa28.12■■■□□ 2.09
CBX3-204ENST00000456948 ECHDC1Q9NTX5 307 aa28.12■■■□□ 2.09
CBX3-204ENST00000456948 NDUFB9Q9Y6M9 179 aa28.12■■■□□ 2.09
CBX3-204ENST00000456948 MAST2Q6P0Q8 1798 aa28.11■■■□□ 2.09
CBX3-204ENST00000456948 ERO1BQ86YB8 467 aa28.11■■■□□ 2.09
CBX3-204ENST00000456948 DHX36Q9H2U1 1008 aaKnown RBP28.11■■■□□ 2.09
CBX3-204ENST00000456948 PAG1Q9NWQ8 432 aa28.11■■■□□ 2.09
CBX3-204ENST00000456948 SLC9C2Q5TAH2 1124 aa28.1■■■□□ 2.09
CBX3-204ENST00000456948 GCC1Q96CN9 775 aa28.1■■■□□ 2.09
CBX3-204ENST00000456948 HAUS7Q99871 368 aa28.1■■■□□ 2.09
CBX3-204ENST00000456948 DDX4Q9NQI0 724 aaKnown RBP28.1■■■□□ 2.09
CBX3-204ENST00000456948 SUPT16HQ9Y5B9 1047 aaKnown RBP28.1■■■□□ 2.09
CBX3-204ENST00000456948 RFX7Q2KHR2 1363 aa28.1■■■□□ 2.09
CBX3-204ENST00000456948 GTF2A2P52657 109 aa28.09■■■□□ 2.09
CBX3-204ENST00000456948 ZKSCAN4Q969J2 545 aaPredicted RBP28.09■■■□□ 2.09
CBX3-204ENST00000456948 OSBPL5Q9H0X9 879 aaPredicted RBP28.09■■■□□ 2.09
CBX3-204ENST00000456948 ZNF112Q9UJU3 913 aa28.09■■■□□ 2.09
CBX3-204ENST00000456948 HDAC1Q13547 482 aaPredicted RBP28.08■■■□□ 2.09
CBX3-204ENST00000456948 TGFBRAP1Q8WUH2 860 aa28.08■■■□□ 2.09
CBX3-204ENST00000456948 OTUD5Q96G74 571 aa28.08■■■□□ 2.09
CBX3-204ENST00000456948 RWDD1Q9H446 243 aaPredicted RBP28.08■■■□□ 2.09
CBX3-204ENST00000456948 DDTLA6NHG4 134 aaPredicted RBP28.07■■■□□ 2.08
CBX3-204ENST00000456948 SPDYE5A6NIY4 337 aa28.07■■■□□ 2.08
CBX3-204ENST00000456948 TBC1D12O60347 775 aa28.07■■■□□ 2.08
CBX3-204ENST00000456948 ZSCAN25Q6NSZ9 544 aa28.07■■■□□ 2.08
CBX3-204ENST00000456948 ADGRA1Q86SQ6 560 aa28.07■■■□□ 2.08
CBX3-204ENST00000456948 PICK1Q9NRD5 415 aa28.07■■■□□ 2.08
CBX3-204ENST00000456948 PI4KBQ9UBF8 816 aa28.07■■■□□ 2.08
CBX3-204ENST00000456948 ATRNL1Q5VV63 1379 aa28.07■■■□□ 2.08
CBX3-204ENST00000456948 MYO5AQ9Y4I1 1855 aaKnown RBP28.06■■■□□ 2.08
CBX3-204ENST00000456948 USP5P45974 858 aa28.06■■■□□ 2.08
CBX3-204ENST00000456948 MAP3K10Q02779 954 aa28.06■■■□□ 2.08
CBX3-204ENST00000456948 PPATQ06203 517 aa28.06■■■□□ 2.08
CBX3-204ENST00000456948 SH3BP5LQ7L8J4 393 aa28.06■■■□□ 2.08
CBX3-204ENST00000456948 MIGA1Q8NAN2 632 aa28.06■■■□□ 2.08
CBX3-204ENST00000456948 TRIM34Q9BYJ4 488 aa28.06■■■□□ 2.08
CBX3-204ENST00000456948 SNCAIPQ9Y6H5 919 aa28.06■■■□□ 2.08
CBX3-204ENST00000456948 COL2A1P02458 1487 aaPredicted RBP28.06■■■□□ 2.08
CBX3-204ENST00000456948 ERC2O15083 957 aa28.05■■■□□ 2.08
CBX3-204ENST00000456948 NOL9Q5SY16 702 aaKnown RBP28.05■■■□□ 2.08
CBX3-204ENST00000456948 IFNL1Q8IU54 200 aa28.05■■■□□ 2.08
CBX3-204ENST00000456948 XPO5Q9HAV4 1204 aaKnown RBP eCLIP28.05■■■□□ 2.08
CBX3-204ENST00000456948 MAGEB6P1A0A0J9YX57 407 aa28.04■■■□□ 2.08
CBX3-204ENST00000456948 CTNND1O60716 968 aaKnown RBP28.04■■■□□ 2.08
CBX3-204ENST00000456948 PDE6AP16499 860 aa28.04■■■□□ 2.08
CBX3-204ENST00000456948 INPP5BP32019 993 aa28.04■■■□□ 2.08
CBX3-204ENST00000456948 PPIL2Q13356 520 aa28.04■■■□□ 2.08
CBX3-204ENST00000456948 SNAPC2Q13487 334 aa28.04■■■□□ 2.08
CBX3-204ENST00000456948 MAPKAPK5Q8IW41 473 aa28.04■■■□□ 2.08
CBX3-204ENST00000456948 ABHD8Q96I13 439 aa28.04■■■□□ 2.08
CBX3-204ENST00000456948 HERC5Q9UII4 1024 aaKnown RBP28.04■■■□□ 2.08
CBX3-204ENST00000456948 OTOFQ9HC10 1997 aa28.04■■■□□ 2.08
CBX3-204ENST00000456948 TTC41PQ6P2S7 1318 aa28.03■■■□□ 2.08
CBX3-204ENST00000456948 TESPA1A2RU30 521 aaPredicted RBP28.03■■■□□ 2.08
CBX3-204ENST00000456948 HLA-DOAP06340 250 aa28.03■■■□□ 2.08
CBX3-204ENST00000456948 CETPP11597 493 aa28.03■■■□□ 2.08
CBX3-204ENST00000456948 GJA5P36382 358 aa28.03■■■□□ 2.08
CBX3-204ENST00000456948 DYNLL1P63167 89 aaKnown RBP28.03■■■□□ 2.08
CBX3-204ENST00000456948 ANKRD45Q5TZF3 282 aa28.03■■■□□ 2.08
CBX3-204ENST00000456948 FOXP4Q8IVH2 680 aaPredicted RBP28.03■■■□□ 2.08
CBX3-204ENST00000456948 DOCK2Q92608 1830 aa28.03■■■□□ 2.08
CBX3-204ENST00000456948 ZNF532Q9HCE3 1301 aa28.02■■■□□ 2.08
CBX3-204ENST00000456948 LRRFIP1Q32MZ4 808 aaKnown RBP28.02■■■□□ 2.08
CBX3-204ENST00000456948 SCYL3Q8IZE3 742 aa28.02■■■□□ 2.08
CBX3-204ENST00000456948 CRNKL1Q9BZJ0 848 aaKnown RBP28.02■■■□□ 2.08
CBX3-204ENST00000456948 FLT1P17948 1338 aa28.01■■■□□ 2.07
CBX3-204ENST00000456948 CCL15-CCL14A0A0B4J2E2 113 aa28.01■■■□□ 2.07
CBX3-204ENST00000456948 CCL15Q16663 113 aa28.01■■■□□ 2.07
CBX3-204ENST00000456948 CRACR2BQ8N4Y2 399 aaPredicted RBP28.01■■■□□ 2.07
CBX3-204ENST00000456948 PHF20L1A8MW92 1017 aa28■■■□□ 2.07
CBX3-204ENST00000456948 DGKZQ13574 1117 aa28■■■□□ 2.07
CBX3-204ENST00000456948 EXOC6Q8TAG9 804 aa28■■■□□ 2.07
CBX3-204ENST00000456948 CNKSR2Q8WXI2 1034 aa28■■■□□ 2.07
CBX3-204ENST00000456948 MS4A4AQ96JQ5 239 aa28■■■□□ 2.07
CBX3-204ENST00000456948 CFHR5Q9BXR6 569 aa28■■■□□ 2.07
CBX3-204ENST00000456948 IRF6O14896 467 aa27.99■■■□□ 2.07
CBX3-204ENST00000456948 TBC1D8O95759 1140 aa27.99■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms