RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 NME2P22392 152 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 ARNTP27540 789 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 GNA15P30679 374 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 XPCQ01831 940 aaPredicted RBP6.87□□□□□ -1.31
USP40-209ENST00000452724 OGFOD3Q6PK18 319 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 SEZ6L2Q6UXD5 910 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 SMYD4Q8IYR2 804 aaPredicted RBP6.87□□□□□ -1.31
USP40-209ENST00000452724 SHISA5Q8N114 240 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 FRMD6Q96NE9 622 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 FANCD2OSQ96PS1 177 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 LGR6Q9HBX8 967 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 RNF19AQ9NV58 838 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 PARP2Q9UGN5 583 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 PPM1HQ9ULR3 514 aa6.87□□□□□ -1.31
USP40-209ENST00000452724 ZNF862O60290 1169 aa6.86□□□□□ -1.31
USP40-209ENST00000452724 RNGTTO60942 597 aaKnown RBP6.86□□□□□ -1.31
USP40-209ENST00000452724 TAL1P17542 331 aaPredicted RBP6.86□□□□□ -1.31
USP40-209ENST00000452724 TP53INP2Q8IXH6 220 aa6.86□□□□□ -1.31
USP40-209ENST00000452724 WDR89Q96FK6 387 aaPredicted RBP6.86□□□□□ -1.31
USP40-209ENST00000452724 ACSBG1Q96GR2 724 aa6.86□□□□□ -1.31
USP40-209ENST00000452724 CBX8Q9HC52 389 aa6.86□□□□□ -1.31
USP40-209ENST00000452724 C1GALT1Q9NS00 363 aa6.86□□□□□ -1.31
USP40-209ENST00000452724 TXKP42681 527 aa6.85□□□□□ -1.31
USP40-209ENST00000452724 PSMD2Q13200 908 aa6.85□□□□□ -1.31
USP40-209ENST00000452724 MAP1SQ66K74 1059 aaPredicted RBP6.85□□□□□ -1.31
USP40-209ENST00000452724 PDZD3Q86UT5 571 aa6.85□□□□□ -1.31
USP40-209ENST00000452724 AGBL5Q8NDL9 886 aa6.85□□□□□ -1.31
USP40-209ENST00000452724 OSBPL7Q9BZF2 842 aa6.85□□□□□ -1.31
USP40-209ENST00000452724 C12orf49Q9H741 205 aa6.85□□□□□ -1.31
USP40-209ENST00000452724 SSU72Q9NP77 194 aaKnown RBP6.85□□□□□ -1.31
USP40-209ENST00000452724 DISC1Q9NRI5 854 aa6.85□□□□□ -1.31
USP40-209ENST00000452724 PCOLCE2Q9UKZ9 415 aa6.85□□□□□ -1.31
USP40-209ENST00000452724 DYNC1LI2O43237 492 aaPredicted RBP6.84□□□□□ -1.31
USP40-209ENST00000452724 DAB2P98082 770 aa6.84□□□□□ -1.31
USP40-209ENST00000452724 TTLL4Q14679 1199 aa6.84□□□□□ -1.31
USP40-209ENST00000452724 TMC4Q7Z404 712 aa6.84□□□□□ -1.31
USP40-209ENST00000452724 STK11IPQ8N1F8 1099 aa6.84□□□□□ -1.31
USP40-209ENST00000452724 FLCNQ8NFG4 579 aa6.84□□□□□ -1.31
USP40-209ENST00000452724 FAM161BQ96MY7 647 aa6.84□□□□□ -1.31
USP40-209ENST00000452724 ZC3H7BQ9UGR2 993 aaKnown RBP6.84□□□□□ -1.31
USP40-209ENST00000452724 PCDHGC5Q9Y5F6 944 aa6.84□□□□□ -1.31
USP40-209ENST00000452724 FAM87AP0C7U9 286 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 HCLS1P14317 486 aaPredicted RBP6.83□□□□□ -1.32
USP40-209ENST00000452724 EIF4BP23588 611 aaKnown RBP6.83□□□□□ -1.32
USP40-209ENST00000452724 ERVK-24P63145 666 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 LRRC14Q15048 493 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 TPTE2Q6XPS3 522 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 ARHGAP27Q6ZUM4 889 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 ABI1Q8IZP0 508 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 C3orf58Q8NDZ4 430 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 NECAB3Q96P71 396 aaPredicted RBP6.83□□□□□ -1.32
USP40-209ENST00000452724 BCL11AQ9H165 835 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 MRS2Q9HD23 443 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 PICK1Q9NRD5 415 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 FAM8A1Q9UBU6 413 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 ADGRE2Q9UHX3 823 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 AK5Q9Y6K8 562 aa6.83□□□□□ -1.32
USP40-209ENST00000452724 ITGAEP38570 1179 aa6.82□□□□□ -1.32
USP40-209ENST00000452724 CDK5R2Q13319 367 aa6.82□□□□□ -1.32
USP40-209ENST00000452724 ZC3H12AQ5D1E8 599 aaKnown RBP6.82□□□□□ -1.32
USP40-209ENST00000452724 MISP3Q96FF7 219 aa6.82□□□□□ -1.32
USP40-209ENST00000452724 SLC5A6Q9Y289 635 aa6.82□□□□□ -1.32
USP40-209ENST00000452724 SORBS3O60504 671 aa6.81□□□□□ -1.32
USP40-209ENST00000452724 USP17L7P0C7H9 530 aa6.81□□□□□ -1.32
USP40-209ENST00000452724 SCARA3Q6AZY7 606 aa6.81□□□□□ -1.32
USP40-209ENST00000452724 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.81□□□□□ -1.32
USP40-209ENST00000452724 RNF214Q8ND24 703 aa6.81□□□□□ -1.32
USP40-209ENST00000452724 STK35Q8TDR2 534 aa6.81□□□□□ -1.32
USP40-209ENST00000452724 GPBAR1Q8TDU6 330 aa6.81□□□□□ -1.32
USP40-209ENST00000452724 ANKRD24Q8TF21 1146 aa6.81□□□□□ -1.32
USP40-209ENST00000452724 KRTAP9-2Q9BYQ4 174 aa6.81□□□□□ -1.32
USP40-209ENST00000452724 TRIM37O94972 964 aa6.8□□□□□ -1.32
USP40-209ENST00000452724 ZNF252P-AS1Q0IIN9 211 aa6.8□□□□□ -1.32
USP40-209ENST00000452724 LLGL2Q6P1M3 1020 aa6.8□□□□□ -1.32
USP40-209ENST00000452724 NETO1Q8TDF5 533 aa6.8□□□□□ -1.32
USP40-209ENST00000452724 ISL2Q96A47 359 aa6.8□□□□□ -1.32
USP40-209ENST00000452724 VTI1BQ9UEU0 232 aa6.8□□□□□ -1.32
USP40-209ENST00000452724 RNF114Q9Y508 228 aa6.8□□□□□ -1.32
USP40-209ENST00000452724 ENC1O14682 589 aa6.79□□□□□ -1.32
USP40-209ENST00000452724 MRPL58Q14197 206 aaKnown RBP6.79□□□□□ -1.32
USP40-209ENST00000452724 FMNL2Q96PY5 1086 aa6.79□□□□□ -1.32
USP40-209ENST00000452724 MKNK2Q9HBH9 465 aa6.79□□□□□ -1.32
USP40-209ENST00000452724 CYP8B1Q9UNU6 501 aa6.79□□□□□ -1.32
USP40-209ENST00000452724 FBXO24O75426 580 aa6.78□□□□□ -1.32
USP40-209ENST00000452724 NEFMP07197 916 aa6.78□□□□□ -1.32
USP40-209ENST00000452724 BMP6P22004 513 aa6.78□□□□□ -1.32
USP40-209ENST00000452724 CDC37L1Q7L3B6 337 aa6.78□□□□□ -1.32
USP40-209ENST00000452724 KCT2Q8NC54 265 aa6.78□□□□□ -1.32
USP40-209ENST00000452724 BCL7CQ8WUZ0 217 aaPredicted RBP6.78□□□□□ -1.32
USP40-209ENST00000452724 DUSP23Q9BVJ7 150 aa6.78□□□□□ -1.32
USP40-209ENST00000452724 PAK6Q9NQU5 681 aaPredicted RBP6.78□□□□□ -1.32
USP40-209ENST00000452724 CACNA2D2Q9NY47 1150 aa6.78□□□□□ -1.32
USP40-209ENST00000452724 UNCXA6NJT0 531 aa6.77□□□□□ -1.33
USP40-209ENST00000452724 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.77□□□□□ -1.33
USP40-209ENST00000452724 FANCGO15287 622 aa6.77□□□□□ -1.33
USP40-209ENST00000452724 CTSHP09668 335 aa6.77□□□□□ -1.33
USP40-209ENST00000452724 IFI16Q16666 785 aaKnown RBP6.77□□□□□ -1.33
USP40-209ENST00000452724 TOP6BLQ8N6T0 577 aa6.77□□□□□ -1.33
USP40-209ENST00000452724 ZNF428Q96B54 188 aa6.77□□□□□ -1.33
USP40-209ENST00000452724 ELMO3Q96BJ8 720 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms