RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SLC1A4P43007 532 aa8.46□□□□□ -1.06
SYNE1-213ENST00000448038 GPR162Q16538 588 aa8.46□□□□□ -1.06
SYNE1-213ENST00000448038 ZSCAN23Q3MJ62 389 aa8.46□□□□□ -1.06
SYNE1-213ENST00000448038 MRPL12P52815 198 aaKnown RBP8.46□□□□□ -1.06
SYNE1-213ENST00000448038 BARGINQ6ZT62 677 aa8.46□□□□□ -1.06
SYNE1-213ENST00000448038 ZNF408Q9H9D4 720 aa8.46□□□□□ -1.06
SYNE1-213ENST00000448038 USP25Q9UHP3 1055 aa8.46□□□□□ -1.06
SYNE1-213ENST00000448038 PRKG1Q13976 671 aa8.46□□□□□ -1.06
SYNE1-213ENST00000448038 PPP2R5BQ15173 497 aa8.46□□□□□ -1.06
SYNE1-213ENST00000448038 ZNF397Q8NF99 534 aaPredicted RBP8.46□□□□□ -1.06
SYNE1-213ENST00000448038 PHKBQ93100 1093 aa8.46□□□□□ -1.06
SYNE1-213ENST00000448038 EXOC1Q9NV70 894 aa8.46□□□□□ -1.06
SYNE1-213ENST00000448038 ARHGEF28Q8N1W1 1705 aaKnown RBP8.46□□□□□ -1.06
SYNE1-213ENST00000448038 ADCY9O60503 1353 aa8.46□□□□□ -1.06
SYNE1-213ENST00000448038 DTNBO60941 627 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 TBCAO75347 108 aaKnown RBP8.45□□□□□ -1.06
SYNE1-213ENST00000448038 DBNDD1Q9H9R9 158 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 ARHGAP23Q9P227 1491 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 POLR1AO95602 1720 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-213ENST00000448038 MTX1Q13505 466 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 STXBP4Q6ZWJ1 553 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 FAM177A1Q8N128 213 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-213ENST00000448038 TXLNBQ8N3L3 684 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 DHX58Q96C10 678 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 TMOD4Q9NZQ9 345 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 SFPQP23246 707 aaKnown RBP eCLIP8.45□□□□□ -1.06
SYNE1-213ENST00000448038 TNFAIP1Q13829 316 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 LSG1Q9H089 658 aaKnown RBP8.45□□□□□ -1.06
SYNE1-213ENST00000448038 RMND1Q9NWS8 449 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 CDHR2Q9BYE9 1310 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 TOP1P11387 765 aaKnown RBP8.45□□□□□ -1.06
SYNE1-213ENST00000448038 MTIF2P46199 727 aaKnown RBP8.45□□□□□ -1.06
SYNE1-213ENST00000448038 OTUD7BQ6GQQ9 843 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 DTHD1Q6ZMT9 781 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 CLIP2Q9UDT6 1046 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 GPS2Q13227 327 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 KRT79Q5XKE5 535 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 MAP4K1Q92918 833 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 PRM3Q9NNZ6 103 aa8.45□□□□□ -1.06
SYNE1-213ENST00000448038 CPDO75976 1380 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 B4DLN1 442 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 TCP10L2B9ZVM9 353 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 CAVIN2O95810 425 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 PRKCSHP14314 528 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-213ENST00000448038 ADD2P35612 726 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 ZNF174Q15697 407 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 ME3Q16798 604 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 LETM2Q2VYF4 491 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 ATL3Q6DD88 541 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 ZNF654Q8IZM8 581 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 SYCP3Q8IZU3 236 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.44□□□□□ -1.06
SYNE1-213ENST00000448038 CD163L1Q9NR16 1453 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 JAK2O60674 1132 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 RILPL1Q5EBL4 403 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 RRAGBQ5VZM2 374 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 CACNA2D4Q7Z3S7 1137 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 MASTLQ96GX5 879 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 ZSWIM6Q9HCJ5 1215 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 CARMIL3Q8ND23 1372 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 CCDC40Q4G0X9 1142 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 ZNF589Q86UQ0 364 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-213ENST00000448038 DIS3L2Q8IYB7 885 aaKnown RBP8.44□□□□□ -1.06
SYNE1-213ENST00000448038 ATP8A2Q9NTI2 1148 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 M0R2C6 588 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 FCHSD1Q86WN1 690 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 ZSCAN10Q96SZ4 725 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-213ENST00000448038 LZTS2Q9BRK4 669 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 RASGRF1Q13972 1273 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 CCDC93Q567U6 631 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 LRSAM1Q6UWE0 723 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 PIK3AP1Q6ZUJ8 805 aa8.44□□□□□ -1.06
SYNE1-213ENST00000448038 KRI1Q8N9T8 703 aaKnown RBP8.44□□□□□ -1.06
SYNE1-213ENST00000448038 DYNLL1P63167 89 aaKnown RBP8.43□□□□□ -1.06
SYNE1-213ENST00000448038 ASIC1P78348 528 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 EN1Q05925 392 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-213ENST00000448038 TRIM28Q13263 835 aaKnown RBP8.43□□□□□ -1.06
SYNE1-213ENST00000448038 TCERG1LQ5VWI1 586 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 DPY19L2Q6NUT2 758 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 PI4K2BQ8TCG2 481 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 hCG_1642624A0A1W2PR95 340 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 ECM2O94769 699 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-213ENST00000448038 FAM173BQ6P4H8 233 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 SMIM5Q71RC9 77 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 GTF3C6Q969F1 213 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 ZNF274Q96GC6 653 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-213ENST00000448038 TRIM47Q96LD4 638 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 CC2D2BQ6DHV5 1058 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 TTLL6Q8N841 843 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 GPR101Q96P66 508 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-213ENST00000448038 ARGLU1Q9NWB6 273 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-213ENST00000448038 TNKSO95271 1327 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 VWA3AA6NCI4 1184 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 SNAP23O00161 211 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 EAPPQ56P03 285 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-213ENST00000448038 KRT40Q6A162 431 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 KIAA1328Q86T90 577 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 CPLX3Q8WVH0 158 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 GOPCQ9HD26 462 aa8.43□□□□□ -1.06
SYNE1-213ENST00000448038 MINPP1Q9UNW1 487 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms