RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 SPTBN5Q9NRC6 3674 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-204ENST00000446625 MYO9BQ13459 2157 aa9.83□□□□□ -0.84
LIMCH1-204ENST00000446625 NFIAQ12857 509 aa9.83□□□□□ -0.84
LIMCH1-204ENST00000446625 BEND3Q5T5X7 828 aa9.83□□□□□ -0.84
LIMCH1-204ENST00000446625 GADL1Q6ZQY3 521 aa9.83□□□□□ -0.84
LIMCH1-204ENST00000446625 SMCR8Q8TEV9 937 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-204ENST00000446625 COA7Q96BR5 231 aa9.83□□□□□ -0.84
LIMCH1-204ENST00000446625 C11orf49Q9H6J7 331 aa9.83□□□□□ -0.84
LIMCH1-204ENST00000446625 MAST3O60307 1309 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 PLXNB2O15031 1838 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 EYSQ5T1H1 3165 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 POTEB2H3BUK9 544 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 GRM8O00222 908 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 TRIM32Q13049 653 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 CAVIN4Q5BKX8 364 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 CDC42EP5Q6NZY7 148 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 ZFPM1Q8IX07 1006 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 ANKRD13CQ8N6S4 541 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 FAM161BQ96MY7 647 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 SLC45A1Q9Y2W3 748 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 SUGT1Q9Y2Z0 365 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 AFG3L2Q9Y4W6 797 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 DOCK1Q14185 1865 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 MROH5Q6ZUA9 1318 aa9.82□□□□□ -0.84
LIMCH1-204ENST00000446625 PHF20L1A8MW92 1017 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 HMGCRP04035 888 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 PTPRAP18433 802 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 DIXDC1Q155Q3 683 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 FAM109BQ6ICB4 259 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 SCYL3Q8IZE3 742 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 KAZALD1Q96I82 304 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 HMX1Q9NP08 348 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 PRDM6Q9NQX0 595 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 PICK1Q9NRD5 415 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 FAM198AQ9UFP1 575 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 OGDHLQ9ULD0 1010 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 DAGLAQ9Y4D2 1042 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 MYH2Q9UKX2 1941 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 PFASO15067 1338 aa9.81□□□□□ -0.84
LIMCH1-204ENST00000446625 ATRNL1Q5VV63 1379 aa9.8□□□□□ -0.84
LIMCH1-204ENST00000446625 MDM2Q00987 491 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-204ENST00000446625 LRRC24Q50LG9 513 aa9.8□□□□□ -0.84
LIMCH1-204ENST00000446625 METTL24Q5JXM2 366 aa9.8□□□□□ -0.84
LIMCH1-204ENST00000446625 VGLL2Q8N8G2 317 aa9.8□□□□□ -0.84
LIMCH1-204ENST00000446625 C9orf78Q9NZ63 289 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-204ENST00000446625 GJD2Q9UKL4 321 aa9.8□□□□□ -0.84
LIMCH1-204ENST00000446625 TRIM75PA6NK02 468 aa9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 PDE8BO95263 885 aa9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 SLURP2P0DP57 97 aa9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 DDX10Q13206 875 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 FAM110CQ1W6H9 321 aa9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 TREML2Q5T2D2 321 aa9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 CCDC84Q86UT8 332 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 SUCLG2Q96I99 432 aa9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 USP40Q9NVE5 1235 aa9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 DNAH12Q6ZR08 3092 aa9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 COL2A1P02458 1487 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-204ENST00000446625 VAMP4O75379 141 aa9.78□□□□□ -0.84
LIMCH1-204ENST00000446625 COL6A1P12109 1028 aa9.78□□□□□ -0.84
LIMCH1-204ENST00000446625 LRRC26Q2I0M4 334 aa9.78□□□□□ -0.84
LIMCH1-204ENST00000446625 SH3BP5LQ7L8J4 393 aa9.78□□□□□ -0.84
LIMCH1-204ENST00000446625 WWC1Q8IX03 1113 aa9.78□□□□□ -0.84
LIMCH1-204ENST00000446625 WDR66Q8TBY9 1149 aa9.78□□□□□ -0.84
LIMCH1-204ENST00000446625 TRIB2Q92519 343 aa9.78□□□□□ -0.84
LIMCH1-204ENST00000446625 AGTPBP1Q9UPW5 1226 aa9.78□□□□□ -0.84
LIMCH1-204ENST00000446625 LRRFIP2Q9Y608 721 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-204ENST00000446625 LOC285556D6RIA3 1793 aa9.78□□□□□ -0.84
LIMCH1-204ENST00000446625 FRMPD3Q5JV73 1810 aa9.77□□□□□ -0.84
LIMCH1-204ENST00000446625 ATAD5Q96QE3 1844 aa9.77□□□□□ -0.84
LIMCH1-204ENST00000446625 ALDH1L1O75891 902 aa9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 NBPF7P0C2Y1 421 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 PRKAR2AP13861 404 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 PRDX5P30044 214 aa9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 ZEB1P37275 1124 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 RGS3P49796 1198 aa9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 MAP3K10Q02779 954 aa9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 MAP3K21Q5TCX8 1036 aa9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 CDX2Q99626 313 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 SPINK5Q9NQ38 1064 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 PNMA3Q9UL41 463 aa9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 FANCIQ9NVI1 1328 aa9.77□□□□□ -0.85
LIMCH1-204ENST00000446625 CDH23Q9H251 3354 aa9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 DDTLA6NHG4 134 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 CTNND1O60716 968 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 IFIT1P09914 478 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 CYP2B6P20813 491 aa9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 FGFR2P21802 821 aa9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 GCLCP48506 637 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 CCDC27Q2M243 656 aa9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 ZNF697Q5TEC3 545 aa9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 ZSCAN29Q8IWY8 852 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 ANKRD44Q8N8A2 993 aa9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 MAFAQ8NHW3 353 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 KLHDC4Q8TBB5 520 aa9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 SRCIN1Q9C0H9 1055 aa9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 BICC1Q9H694 974 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 KIF16BQ96L93 1317 aa9.76□□□□□ -0.85
LIMCH1-204ENST00000446625 MAST2Q6P0Q8 1798 aa9.75□□□□□ -0.85
LIMCH1-204ENST00000446625 ENTPD3O75355 529 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms