RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 GSTO1P78417 241 aa9.61□□□□□ -0.87
CD44-211ENST00000442151 ATF7IPQ6VMQ6 1270 aa9.61□□□□□ -0.87
CD44-211ENST00000442151 KLHDC4Q8TBB5 520 aa9.61□□□□□ -0.87
CD44-211ENST00000442151 SIL1Q9H173 461 aa9.61□□□□□ -0.87
CD44-211ENST00000442151 HPS5Q9UPZ3 1129 aa9.61□□□□□ -0.87
CD44-211ENST00000442151 ZNF646O15015 1829 aaPredicted RBP9.61□□□□□ -0.87
CD44-211ENST00000442151 A0A1B0GUL6 1792 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 SRGAP3O43295 1099 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 GNRH1P01148 92 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 MS4A1P11836 297 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 SP3Q02447 781 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 PPATQ06203 517 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 SNAPC2Q13487 334 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 APOBEC3HQ6NTF7 200 aaKnown RBP9.6□□□□□ -0.87
CD44-211ENST00000442151 TMEM92Q6UXU6 159 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 ATG9AQ7Z3C6 839 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 NBPF11Q86T75 865 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.6□□□□□ -0.87
CD44-211ENST00000442151 CLMNQ96JQ2 1002 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 TEPSINQ96N21 525 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 NOL10Q9BSC4 688 aaKnown RBP9.6□□□□□ -0.87
CD44-211ENST00000442151 PCDHAC2Q9Y5I4 1007 aa9.6□□□□□ -0.87
CD44-211ENST00000442151 RPAP1Q9BWH6 1393 aaPredicted RBP9.59□□□□□ -0.87
CD44-211ENST00000442151 CCL15-CCL14A0A0B4J2E2 113 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 SPDYE5A6NIY4 337 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 ENTPD3O75355 529 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 UQCRFS1P1P0C7P4 283 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 PRMT2P55345 433 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 PPIL2Q13356 520 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 MTX1Q13505 466 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 CCL15Q16663 113 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 ZKSCAN2Q63HK3 967 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 DZIP1Q86YF9 867 aaKnown RBP9.59□□□□□ -0.87
CD44-211ENST00000442151 TMEM39BQ9GZU3 492 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 EFCC1Q9HA90 598 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 USP40Q9NVE5 1235 aa9.59□□□□□ -0.87
CD44-211ENST00000442151 TAF1CQ15572 869 aaPredicted RBP9.59□□□□□ -0.88
CD44-211ENST00000442151 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.59□□□□□ -0.88
CD44-211ENST00000442151 ERICH6Q7L0X2 663 aa9.59□□□□□ -0.88
CD44-211ENST00000442151 FRAT1Q92837 279 aaPredicted RBP9.59□□□□□ -0.88
CD44-211ENST00000442151 WRNIP1Q96S55 665 aa9.59□□□□□ -0.88
CD44-211ENST00000442151 TRIM17Q9Y577 477 aa9.59□□□□□ -0.88
CD44-211ENST00000442151 HOXD10P28358 340 aa9.58□□□□□ -0.88
CD44-211ENST00000442151 VGLL4Q14135 290 aa9.58□□□□□ -0.88
CD44-211ENST00000442151 CCDC102BQ68D86 513 aa9.58□□□□□ -0.88
CD44-211ENST00000442151 NEUROD6Q96NK8 337 aa9.58□□□□□ -0.88
CD44-211ENST00000442151 MEIS3Q99687 375 aa9.58□□□□□ -0.88
CD44-211ENST00000442151 CHMP4BQ9H444 224 aaKnown RBP9.58□□□□□ -0.88
CD44-211ENST00000442151 A0A1B0GUL7 405 aa9.57□□□□□ -0.88
CD44-211ENST00000442151 CXCL11O14625 94 aa9.57□□□□□ -0.88
CD44-211ENST00000442151 CCDC158Q5M9N0 1113 aa9.57□□□□□ -0.88
CD44-211ENST00000442151 CDC42EP5Q6NZY7 148 aa9.57□□□□□ -0.88
CD44-211ENST00000442151 ADGRD1Q6QNK2 874 aa9.57□□□□□ -0.88
CD44-211ENST00000442151 FASTKD5Q7L8L6 764 aaKnown RBP9.57□□□□□ -0.88
CD44-211ENST00000442151 ZSCAN29Q8IWY8 852 aaPredicted RBP9.57□□□□□ -0.88
CD44-211ENST00000442151 FTSJ3Q8IY81 847 aaKnown RBP9.57□□□□□ -0.88
CD44-211ENST00000442151 MS4A4AQ96JQ5 239 aa9.57□□□□□ -0.88
CD44-211ENST00000442151 PICK1Q9NRD5 415 aa9.57□□□□□ -0.88
CD44-211ENST00000442151 ABCF2Q9UG63 623 aa9.57□□□□□ -0.88
CD44-211ENST00000442151 IGF2BP3O00425 579 aaKnown RBP eCLIP9.56□□□□□ -0.88
CD44-211ENST00000442151 TIMM10P62072 90 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 CRHR2Q13324 411 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 OS9Q13438 667 aaPredicted RBP9.56□□□□□ -0.88
CD44-211ENST00000442151 XAGE2Q96GT9 111 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 IDI2Q9BXS1 227 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 TBC1D2Q9BYX2 928 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 GPR108Q9NPR9 543 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 ZNF112Q9UJU3 913 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 FZD1Q9UP38 647 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 DAGLAQ9Y4D2 1042 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 ARAP2Q8WZ64 1704 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 SSC5DA1L4H1 1573 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 BAG3O95817 575 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 CAPN2P17655 700 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 PHKA1P46020 1223 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 GRIK5Q16478 980 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 NOL9Q5SY16 702 aaKnown RBP9.56□□□□□ -0.88
CD44-211ENST00000442151 TMED8Q6PL24 325 aaPredicted RBP9.56□□□□□ -0.88
CD44-211ENST00000442151 OTOP1Q7RTM1 612 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 PA2G4Q9UQ80 394 aaKnown RBP9.56□□□□□ -0.88
CD44-211ENST00000442151 PTPN22Q9Y2R2 807 aa9.56□□□□□ -0.88
CD44-211ENST00000442151 TRIM27P14373 513 aa9.55□□□□□ -0.88
CD44-211ENST00000442151 GJA5P36382 358 aa9.55□□□□□ -0.88
CD44-211ENST00000442151 CACNB3P54284 484 aa9.55□□□□□ -0.88
CD44-211ENST00000442151 SOX10P56693 466 aa9.55□□□□□ -0.88
CD44-211ENST00000442151 ATP8B2P98198 1209 aa9.55□□□□□ -0.88
CD44-211ENST00000442151 HNRNPUQ00839 825 aaKnown RBP eCLIP9.55□□□□□ -0.88
CD44-211ENST00000442151 TFCP2Q12800 502 aa9.55□□□□□ -0.88
CD44-211ENST00000442151 ANKRD23Q86SG2 305 aa9.55□□□□□ -0.88
CD44-211ENST00000442151 CERS3Q8IU89 383 aa9.55□□□□□ -0.88
CD44-211ENST00000442151 BRI3BPQ8WY22 251 aa9.55□□□□□ -0.88
CD44-211ENST00000442151 GAKO14976 1311 aa9.55□□□□□ -0.88
CD44-211ENST00000442151 TLR2O60603 784 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 PRDX5P30044 214 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 TCP10Q12799 353 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 HSP90AB4PQ58FF6 505 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 DIEXFQ68CQ4 756 aaKnown RBP9.54□□□□□ -0.88
CD44-211ENST00000442151 MIGA2Q7L4E1 593 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 CD99L2Q8TCZ2 262 aa9.54□□□□□ -0.88
CD44-211ENST00000442151 PTPN18Q99952 460 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms