RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 ASPAP45381 313 aa9.52□□□□□ -0.89
CCDC88A-206ENST00000430086 RBM25P49756 843 aaKnown RBP9.52□□□□□ -0.89
CCDC88A-206ENST00000430086 USP11P51784 963 aa9.52□□□□□ -0.89
CCDC88A-206ENST00000430086 CAMK2GQ13555 558 aaPredicted RBP9.52□□□□□ -0.89
CCDC88A-206ENST00000430086 SGO2Q562F6 1265 aa9.52□□□□□ -0.89
CCDC88A-206ENST00000430086 CDPF1Q6NVV7 123 aa9.52□□□□□ -0.89
CCDC88A-206ENST00000430086 CLEC10AQ8IUN9 316 aa9.52□□□□□ -0.89
CCDC88A-206ENST00000430086 RNF34Q969K3 372 aa9.52□□□□□ -0.89
CCDC88A-206ENST00000430086 YIPF2Q9BWQ6 316 aa9.52□□□□□ -0.89
CCDC88A-206ENST00000430086 COPRSQ9NQ92 184 aa9.52□□□□□ -0.89
CCDC88A-206ENST00000430086 FAM105AQ9NUU6 356 aa9.52□□□□□ -0.89
CCDC88A-206ENST00000430086 PF4P02776 101 aa9.51□□□□□ -0.89
CCDC88A-206ENST00000430086 MAP4P27816 1152 aaKnown RBP9.51□□□□□ -0.89
CCDC88A-206ENST00000430086 RING1Q06587 406 aa9.51□□□□□ -0.89
CCDC88A-206ENST00000430086 SEPT6Q14141 434 aa9.51□□□□□ -0.89
CCDC88A-206ENST00000430086 FAM83CQ9BQN1 747 aa9.51□□□□□ -0.89
CCDC88A-206ENST00000430086 ACSS3Q9H6R3 686 aa9.51□□□□□ -0.89
CCDC88A-206ENST00000430086 KCNQ5Q9NR82 932 aa9.51□□□□□ -0.89
CCDC88A-206ENST00000430086 SNCAIPQ9Y6H5 919 aa9.51□□□□□ -0.89
CCDC88A-206ENST00000430086 F6X3S4 739 aa9.5□□□□□ -0.89
CCDC88A-206ENST00000430086 DYRK3O43781 588 aa9.5□□□□□ -0.89
CCDC88A-206ENST00000430086 FURINP09958 794 aa9.5□□□□□ -0.89
CCDC88A-206ENST00000430086 BEND4Q6ZU67 534 aa9.5□□□□□ -0.89
CCDC88A-206ENST00000430086 STOML1Q9UBI4 398 aa9.5□□□□□ -0.89
CCDC88A-206ENST00000430086 MINDY4BA8MYZ0 360 aa9.49□□□□□ -0.89
CCDC88A-206ENST00000430086 INPP5AQ14642 412 aa9.49□□□□□ -0.89
CCDC88A-206ENST00000430086 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.49□□□□□ -0.89
CCDC88A-206ENST00000430086 RNF214Q8ND24 703 aa9.49□□□□□ -0.89
CCDC88A-206ENST00000430086 FBLIM1Q8WUP2 373 aa9.49□□□□□ -0.89
CCDC88A-206ENST00000430086 KCNF1Q9H3M0 494 aa9.49□□□□□ -0.89
CCDC88A-206ENST00000430086 DCDC2CA8MYV0 355 aa9.48□□□□□ -0.89
CCDC88A-206ENST00000430086 GARTP22102 1010 aa9.48□□□□□ -0.89
CCDC88A-206ENST00000430086 DIEXFQ68CQ4 756 aaKnown RBP9.48□□□□□ -0.89
CCDC88A-206ENST00000430086 LRFN4Q6PJG9 635 aa9.48□□□□□ -0.89
CCDC88A-206ENST00000430086 CYFIP1Q7L576 1253 aa9.48□□□□□ -0.89
CCDC88A-206ENST00000430086 HDXQ7Z353 690 aa9.48□□□□□ -0.89
CCDC88A-206ENST00000430086 METTL16Q86W50 562 aaKnown RBP9.48□□□□□ -0.89
CCDC88A-206ENST00000430086 ELMO3Q96BJ8 720 aa9.48□□□□□ -0.89
CCDC88A-206ENST00000430086 C7orf69Q9H7B7 122 aa9.48□□□□□ -0.89
CCDC88A-206ENST00000430086 FAM95CA0A1B0GW59 222 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 FAM221AA4D161 298 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 GFRA2O00451 464 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 FANCGO15287 622 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 RXRBP28702 533 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 EIF4A3P38919 411 aaKnown RBP9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 RPL6Q02878 288 aaKnown RBP9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 MAP7Q14244 749 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 TTLL4Q14679 1199 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 BNC2Q6ZN30 1099 aaPredicted RBP9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 SLC51AQ86UW1 340 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 C12orf40Q86WS4 652 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 GATAD2BQ8WXI9 593 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 JARID2Q92833 1246 aaPredicted RBP9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 PLPPR2Q96GM1 343 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 SEMA6CQ9H3T2 930 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 PIDD1Q9HB75 910 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 TACC3Q9Y6A5 838 aa9.47□□□□□ -0.89
CCDC88A-206ENST00000430086 CILPO75339 1184 aa9.46□□□□□ -0.9
CCDC88A-206ENST00000430086 F13A1P00488 732 aa9.46□□□□□ -0.9
CCDC88A-206ENST00000430086 NEFMP07197 916 aa9.46□□□□□ -0.9
CCDC88A-206ENST00000430086 RAB6AP20340 208 aa9.46□□□□□ -0.9
CCDC88A-206ENST00000430086 HDLBPQ00341 1268 aaKnown RBP9.46□□□□□ -0.9
CCDC88A-206ENST00000430086 FAM160A1Q05DH4 1040 aa9.46□□□□□ -0.9
CCDC88A-206ENST00000430086 PPM1JQ5JR12 505 aa9.46□□□□□ -0.9
CCDC88A-206ENST00000430086 WIPI1Q5MNZ9 446 aaPredicted RBP9.46□□□□□ -0.9
CCDC88A-206ENST00000430086 USP48Q86UV5 1035 aa9.46□□□□□ -0.9
CCDC88A-206ENST00000430086 CSADQ9Y600 493 aa9.46□□□□□ -0.9
CCDC88A-206ENST00000430086 HMX2A2RU54 273 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 E9PSI1 815 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 GREM1O60565 184 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 NFICP08651 508 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 NTF4P34130 210 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 CDK8P49336 464 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 SNAP47Q5SQN1 464 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 ZBTB37Q5TC79 503 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 FBXL19Q6PCT2 694 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 PAOXQ6QHF9 649 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 SMYD4Q8IYR2 804 aaPredicted RBP9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 GOLM1Q8NBJ4 401 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 SEMA6BQ9H3T3 888 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 ADAMTS1Q9UHI8 967 aa9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 SUPT16HQ9Y5B9 1047 aaKnown RBP9.45□□□□□ -0.9
CCDC88A-206ENST00000430086 GSC2O15499 205 aa9.44□□□□□ -0.9
CCDC88A-206ENST00000430086 HCLS1P14317 486 aaPredicted RBP9.44□□□□□ -0.9
CCDC88A-206ENST00000430086 RNF43Q68DV7 783 aa9.44□□□□□ -0.9
CCDC88A-206ENST00000430086 SEZ6L2Q6UXD5 910 aa9.44□□□□□ -0.9
CCDC88A-206ENST00000430086 FAM196AQ6ZSG2 479 aa9.44□□□□□ -0.9
CCDC88A-206ENST00000430086 ZNF296Q8WUU4 475 aaPredicted RBP9.44□□□□□ -0.9
CCDC88A-206ENST00000430086 DDX41Q9UJV9 622 aaKnown RBP9.44□□□□□ -0.9
CCDC88A-206ENST00000430086 PCOLCE2Q9UKZ9 415 aa9.44□□□□□ -0.9
CCDC88A-206ENST00000430086 ROBO2Q9HCK4 1378 aa9.44□□□□□ -0.9
CCDC88A-206ENST00000430086 K7ELQ4 463 aaPredicted RBP9.43□□□□□ -0.9
CCDC88A-206ENST00000430086 RNGTTO60942 597 aaKnown RBP9.43□□□□□ -0.9
CCDC88A-206ENST00000430086 FSTP19883 344 aa9.43□□□□□ -0.9
CCDC88A-206ENST00000430086 MPP2Q14168 576 aa9.43□□□□□ -0.9
CCDC88A-206ENST00000430086 NFKBIBQ15653 356 aa9.43□□□□□ -0.9
CCDC88A-206ENST00000430086 ZNF394Q53GI3 561 aa9.43□□□□□ -0.9
CCDC88A-206ENST00000430086 ISL2Q96A47 359 aa9.43□□□□□ -0.9
CCDC88A-206ENST00000430086 LRRC3Q9BY71 257 aa9.43□□□□□ -0.9
CCDC88A-206ENST00000430086 PICK1Q9NRD5 415 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms