RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 SAP30BPQ9UHR5 308 aaKnown RBP13.86□□□□□ -0.19
PTPRN-204ENST00000423636 RCOR1Q9UKL0 485 aa13.86□□□□□ -0.19
PTPRN-204ENST00000423636 F8W031 263 aaPredicted RBP13.85□□□□□ -0.19
PTPRN-204ENST00000423636 ADAMTS3O15072 1205 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 PNOCQ13519 176 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 WTAPQ15007 396 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 NAA16Q6N069 864 aaPredicted RBP13.85□□□□□ -0.19
PTPRN-204ENST00000423636 FAM196AQ6ZSG2 479 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 DYNLL2Q96FJ2 89 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 C16orf45Q96MC5 204 aaPredicted RBP13.85□□□□□ -0.19
PTPRN-204ENST00000423636 ZNF396Q96N95 335 aaPredicted RBP13.85□□□□□ -0.19
PTPRN-204ENST00000423636 NWD2Q9ULI1 1742 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 LETM1O95202 739 aaPredicted RBP13.85□□□□□ -0.19
PTPRN-204ENST00000423636 PLEKHA8P1O95397 391 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 NOLC1Q14978 699 aaKnown RBP eCLIP13.85□□□□□ -0.19
PTPRN-204ENST00000423636 LLPHQ9BRT6 129 aaKnown RBP13.85□□□□□ -0.19
PTPRN-204ENST00000423636 UBAC1Q9BSL1 405 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 DDX19AQ9NUU7 478 aaKnown RBP13.85□□□□□ -0.19
PTPRN-204ENST00000423636 OFD1O75665 1012 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 PPARAQ07869 468 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 SLC44A5Q8NCS7 719 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.85□□□□□ -0.19
PTPRN-204ENST00000423636 UIMC1Q96RL1 719 aa13.85□□□□□ -0.19
PTPRN-204ENST00000423636 AKAP11Q9UKA4 1901 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 LMOD1P29536 600 aaPredicted RBP13.84□□□□□ -0.19
PTPRN-204ENST00000423636 ZRSR1Q15695 479 aaKnown RBP13.84□□□□□ -0.19
PTPRN-204ENST00000423636 CAVIN4Q5BKX8 364 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 CREBRFQ8IUR6 639 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 CDC5LQ99459 802 aaKnown RBP13.84□□□□□ -0.19
PTPRN-204ENST00000423636 CLIP2Q9UDT6 1046 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 ELP1O95163 1332 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 USP17L8P0C7I0 530 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 RPS8P62241 208 aaKnown RBP13.84□□□□□ -0.19
PTPRN-204ENST00000423636 ANO1Q5XXA6 986 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 MRPS27Q92552 414 aaKnown RBP13.84□□□□□ -0.19
PTPRN-204ENST00000423636 KIF3AQ9Y496 699 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 DOT1LQ8TEK3 1739 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 PFKFB1P16118 471 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 EARS2Q5JPH6 523 aaKnown RBP13.84□□□□□ -0.19
PTPRN-204ENST00000423636 NLRP3Q96P20 1036 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 CABP5Q9NP86 173 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 ZNF652Q9Y2D9 606 aa13.84□□□□□ -0.19
PTPRN-204ENST00000423636 WNT7AO00755 349 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 ZNF202O95125 648 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 RFC4P35249 363 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 MECOMQ03112 1051 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 TRIM29Q14134 588 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 ZBTB9Q96C00 473 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 V9GY48 417 aaPredicted RBP13.83□□□□□ -0.2
PTPRN-204ENST00000423636 TNKSO95271 1327 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 SPEF2Q9C093 1822 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 DHX16O60231 1041 aaKnown RBP13.83□□□□□ -0.2
PTPRN-204ENST00000423636 TOM1O60784 492 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 SMC2O95347 1197 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 CDC25AP30304 524 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 NACAP1Q9BZK3 213 aa13.83□□□□□ -0.2
PTPRN-204ENST00000423636 ERICH2A1L162 156 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 FAM160A1Q05DH4 1040 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 SSRP1Q08945 709 aaKnown RBP13.82□□□□□ -0.2
PTPRN-204ENST00000423636 RTN1Q16799 776 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 PARP10Q53GL7 1025 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 DIS3L2Q8IYB7 885 aaKnown RBP13.82□□□□□ -0.2
PTPRN-204ENST00000423636 PCDHB6Q9Y5E3 794 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 RIMBP2O15034 1052 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 ATP1A3P13637 1013 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 TMX1Q9H3N1 280 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 ZMYM6O95789 1325 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 NTRK3Q16288 839 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 LRRC4BQ9NT99 713 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 FBXO3Q9UK99 471 aa13.82□□□□□ -0.2
PTPRN-204ENST00000423636 RTCBQ9Y3I0 505 aaKnown RBP13.82□□□□□ -0.2
PTPRN-204ENST00000423636 RFX7Q2KHR2 1363 aa13.81□□□□□ -0.2
PTPRN-204ENST00000423636 ENGASEQ8NFI3 743 aa13.81□□□□□ -0.2
PTPRN-204ENST00000423636 CACTINQ8WUQ7 758 aaKnown RBP13.81□□□□□ -0.2
PTPRN-204ENST00000423636 SHISA4Q96DD7 197 aa13.81□□□□□ -0.2
PTPRN-204ENST00000423636 COL1A1P02452 1464 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-204ENST00000423636 GOLGA8HP0CJ92 632 aa13.81□□□□□ -0.2
PTPRN-204ENST00000423636 NAA30Q147X3 362 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-204ENST00000423636 SHC4Q6S5L8 630 aa13.81□□□□□ -0.2
PTPRN-204ENST00000423636 ZNF654Q8IZM8 581 aa13.81□□□□□ -0.2
PTPRN-204ENST00000423636 FMR1NBQ8N0W7 255 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-204ENST00000423636 RASGRP4Q8TDF6 673 aa13.81□□□□□ -0.2
PTPRN-204ENST00000423636 MCM9Q9NXL9 1143 aa13.81□□□□□ -0.2
PTPRN-204ENST00000423636 LRP6O75581 1613 aa13.81□□□□□ -0.2
PTPRN-204ENST00000423636 USP27XA6NNY8 438 aa13.8□□□□□ -0.2
PTPRN-204ENST00000423636 ZNF75DP51815 510 aa13.8□□□□□ -0.2
PTPRN-204ENST00000423636 LONRF3Q496Y0 759 aa13.8□□□□□ -0.2
PTPRN-204ENST00000423636 TRMT44Q8IYL2 757 aaKnown RBP13.8□□□□□ -0.2
PTPRN-204ENST00000423636 MXD3Q9BW11 206 aa13.8□□□□□ -0.2
PTPRN-204ENST00000423636 RAD21O60216 631 aa13.8□□□□□ -0.2
PTPRN-204ENST00000423636 CPLX2Q6PUV4 134 aaKnown RBP13.8□□□□□ -0.2
PTPRN-204ENST00000423636 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.8□□□□□ -0.2
PTPRN-204ENST00000423636 PLIN2Q99541 437 aa13.8□□□□□ -0.2
PTPRN-204ENST00000423636 SLC3A2P08195 630 aaKnown RBP13.8□□□□□ -0.2
PTPRN-204ENST00000423636 HIBADHP31937 336 aaKnown RBP13.8□□□□□ -0.2
PTPRN-204ENST00000423636 AFMP43652 599 aa13.8□□□□□ -0.2
PTPRN-204ENST00000423636 ENAHQ8N8S7 591 aaPredicted RBP13.8□□□□□ -0.2
PTPRN-204ENST00000423636 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.8□□□□□ -0.2
PTPRN-204ENST00000423636 V9GYY5 206 aaPredicted RBP13.8□□□□□ -0.2
PTPRN-204ENST00000423636 COL16A1Q07092 1604 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms