RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TRIM75PA6NK02 468 aa10.08□□□□□ -0.8
VIM-202ENST00000421459 CXCL11O14625 94 aa10.08□□□□□ -0.8
VIM-202ENST00000421459 GNRH1P01148 92 aa10.08□□□□□ -0.8
VIM-202ENST00000421459 IL15P40933 162 aaPredicted RBP10.08□□□□□ -0.8
VIM-202ENST00000421459 TFCP2Q12800 502 aa10.08□□□□□ -0.8
VIM-202ENST00000421459 PI16Q6UXB8 463 aa10.08□□□□□ -0.8
VIM-202ENST00000421459 TRMT2AQ8IZ69 625 aaKnown RBP10.08□□□□□ -0.8
VIM-202ENST00000421459 SCYL3Q8IZE3 742 aa10.08□□□□□ -0.8
VIM-202ENST00000421459 DPF3Q92784 378 aa10.08□□□□□ -0.8
VIM-202ENST00000421459 RNF208Q9H0X6 261 aa10.08□□□□□ -0.8
VIM-202ENST00000421459 UNC93B1Q9H1C4 597 aa10.08□□□□□ -0.8
VIM-202ENST00000421459 AFG3L2Q9Y4W6 797 aa10.08□□□□□ -0.8
VIM-202ENST00000421459 RBBP6Q7Z6E9 1792 aaKnown RBP10.08□□□□□ -0.8
VIM-202ENST00000421459 SALL1Q9NSC2 1324 aa10.07□□□□□ -0.8
VIM-202ENST00000421459 A0A0G2JLL6 359 aaPredicted RBP10.07□□□□□ -0.8
VIM-202ENST00000421459 ELNP15502 786 aa10.07□□□□□ -0.8
VIM-202ENST00000421459 HOXD10P28358 340 aa10.07□□□□□ -0.8
VIM-202ENST00000421459 BTDP43251 543 aa10.07□□□□□ -0.8
VIM-202ENST00000421459 PRMT2P55345 433 aa10.07□□□□□ -0.8
VIM-202ENST00000421459 MECOMQ03112 1051 aa10.07□□□□□ -0.8
VIM-202ENST00000421459 RRP1BQ14684 758 aaKnown RBP10.07□□□□□ -0.8
VIM-202ENST00000421459 TBC1D9Q6ZT07 1266 aa10.07□□□□□ -0.8
VIM-202ENST00000421459 PRRT2Q7Z6L0 340 aaPredicted RBP10.07□□□□□ -0.8
VIM-202ENST00000421459 DZIP1Q86YF9 867 aaKnown RBP10.07□□□□□ -0.8
VIM-202ENST00000421459 XAGE2Q96GT9 111 aa10.07□□□□□ -0.8
VIM-202ENST00000421459 PARK7Q99497 189 aaKnown RBP10.07□□□□□ -0.8
VIM-202ENST00000421459 IDI2Q9BXS1 227 aa10.07□□□□□ -0.8
VIM-202ENST00000421459 PICK1Q9NRD5 415 aa10.07□□□□□ -0.8
VIM-202ENST00000421459 RBM27Q9P2N5 1060 aaKnown RBP10.07□□□□□ -0.8
VIM-202ENST00000421459 RANBP2P49792 3224 aaKnown RBP10.07□□□□□ -0.8
VIM-202ENST00000421459 GAKO14976 1311 aa10.07□□□□□ -0.8
VIM-202ENST00000421459 RFX7Q2KHR2 1363 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 A0A1B0GUL7 405 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 ENTPD3O75355 529 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 GJA8P48165 433 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 FLT3LGP49771 235 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 FCGRTP55899 365 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 RHBDL3P58872 404 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 MAP3K10Q02779 954 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 TREML2Q5T2D2 321 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 UBE2Q1Q7Z7E8 422 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 NEUROD6Q96NK8 337 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 COPRSQ9NQ92 184 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 FBXO3Q9UK99 471 aa10.06□□□□□ -0.8
VIM-202ENST00000421459 SEMA3EO15041 775 aa10.05□□□□□ -0.8
VIM-202ENST00000421459 SRGAP3O43295 1099 aa10.05□□□□□ -0.8
VIM-202ENST00000421459 ADCY3O60266 1144 aa10.05□□□□□ -0.8
VIM-202ENST00000421459 PEX10O60683 326 aa10.05□□□□□ -0.8
VIM-202ENST00000421459 GJB1P08034 283 aa10.05□□□□□ -0.8
VIM-202ENST00000421459 RARSP54136 660 aaKnown RBP10.05□□□□□ -0.8
VIM-202ENST00000421459 FASTKD5Q7L8L6 764 aaKnown RBP10.05□□□□□ -0.8
VIM-202ENST00000421459 ANKRD13CQ8N6S4 541 aa10.05□□□□□ -0.8
VIM-202ENST00000421459 U2AF1L4Q8WU68 220 aaKnown RBP10.05□□□□□ -0.8
VIM-202ENST00000421459 HMG20BQ9P0W2 317 aa10.05□□□□□ -0.8
VIM-202ENST00000421459 TAOK2Q9UL54 1235 aa10.05□□□□□ -0.8
VIM-202ENST00000421459 MROH7-TTC4A0A0A0MT08 1334 aa10.05□□□□□ -0.8
VIM-202ENST00000421459 KIAA0100Q14667 2235 aaKnown RBP10.05□□□□□ -0.8
VIM-202ENST00000421459 GPR75-ASB3A0A0A6YYF3 556 aa10.04□□□□□ -0.8
VIM-202ENST00000421459 CTNND1O60716 968 aaKnown RBP10.04□□□□□ -0.8
VIM-202ENST00000421459 INHAP05111 366 aa10.04□□□□□ -0.8
VIM-202ENST00000421459 UBXN2AP68543 259 aa10.04□□□□□ -0.8
VIM-202ENST00000421459 JAG1P78504 1218 aa10.04□□□□□ -0.8
VIM-202ENST00000421459 ERICH6Q7L0X2 663 aa10.04□□□□□ -0.8
VIM-202ENST00000421459 ZGPATQ8N5A5 531 aaKnown RBP10.04□□□□□ -0.8
VIM-202ENST00000421459 FAM163AQ96GL9 167 aaPredicted RBP10.04□□□□□ -0.8
VIM-202ENST00000421459 API5Q9BZZ5 524 aaKnown RBP10.04□□□□□ -0.8
VIM-202ENST00000421459 PNMA6EA0A0J9YXQ4 647 aa10.03□□□□□ -0.8
VIM-202ENST00000421459 TNPO2O14787 897 aaKnown RBP10.03□□□□□ -0.8
VIM-202ENST00000421459 FARP2O94887 1054 aaPredicted RBP10.03□□□□□ -0.8
VIM-202ENST00000421459 SGPL1O95470 568 aa10.03□□□□□ -0.8
VIM-202ENST00000421459 TFRCP02786 760 aaKnown RBP10.03□□□□□ -0.8
VIM-202ENST00000421459 TRIM32Q13049 653 aa10.03□□□□□ -0.8
VIM-202ENST00000421459 SPP2Q13103 211 aa10.03□□□□□ -0.8
VIM-202ENST00000421459 SHROOM1Q2M3G4 852 aaPredicted RBP10.03□□□□□ -0.8
VIM-202ENST00000421459 SLAIN1Q8ND83 568 aa10.03□□□□□ -0.8
VIM-202ENST00000421459 NKX2-3Q8TAU0 364 aa10.03□□□□□ -0.8
VIM-202ENST00000421459 SMCR8Q8TEV9 937 aaPredicted RBP10.03□□□□□ -0.8
VIM-202ENST00000421459 NSUN4Q96CB9 384 aaKnown RBP10.03□□□□□ -0.8
VIM-202ENST00000421459 DEFB118Q96PH6 123 aa10.03□□□□□ -0.8
VIM-202ENST00000421459 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.03□□□□□ -0.8
VIM-202ENST00000421459 SNRKQ9NRH2 765 aa10.03□□□□□ -0.8
VIM-202ENST00000421459 RAI14Q9P0K7 980 aa10.03□□□□□ -0.8
VIM-202ENST00000421459 BCAR3O75815 825 aa10.02□□□□□ -0.81
VIM-202ENST00000421459 MCAMP43121 646 aa10.02□□□□□ -0.81
VIM-202ENST00000421459 HMGCS2P54868 508 aa10.02□□□□□ -0.81
VIM-202ENST00000421459 MVPQ14764 893 aaKnown RBP10.02□□□□□ -0.81
VIM-202ENST00000421459 GORABQ5T7V8 394 aa10.02□□□□□ -0.81
VIM-202ENST00000421459 SPTY2D1Q68D10 685 aaPredicted RBP10.02□□□□□ -0.81
VIM-202ENST00000421459 SPATA5Q8NB90 893 aa10.02□□□□□ -0.81
VIM-202ENST00000421459 SH3RF3Q8TEJ3 882 aaPredicted RBP10.02□□□□□ -0.81
VIM-202ENST00000421459 DIS3LQ8TF46 1054 aaKnown RBP10.02□□□□□ -0.81
VIM-202ENST00000421459 CLUAP1Q96AJ1 413 aa10.02□□□□□ -0.81
VIM-202ENST00000421459 AGTPBP1Q9UPW5 1226 aa10.02□□□□□ -0.81
VIM-202ENST00000421459 ZBTB7BO15156 539 aaPredicted RBP10.01□□□□□ -0.81
VIM-202ENST00000421459 TBC1D12O60347 775 aa10.01□□□□□ -0.81
VIM-202ENST00000421459 SLF2Q8IX21 1173 aa10.01□□□□□ -0.81
VIM-202ENST00000421459 FRAT1Q92837 279 aaPredicted RBP10.01□□□□□ -0.81
VIM-202ENST00000421459 PAWRQ96IZ0 340 aaKnown RBP10.01□□□□□ -0.81
VIM-202ENST00000421459 OSBPL5Q9H0X9 879 aaPredicted RBP10.01□□□□□ -0.81
VIM-202ENST00000421459 PRO3102Q9H379 93 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms