RNA–Protein interactions for RNA: ENST00000419974.2

SHMT1P1-201, Transcript of serine hydroxymethyltransferase 1 (soluble) pseudogene 1, humanhuman

BASIC

Gene SHMT1P1, Length 1,312 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P1-201ENST00000419974 MXD3Q9BW11 206 aa16.93■□□□□ 0.3
SHMT1P1-201ENST00000419974 IDI2Q9BXS1 227 aa16.93■□□□□ 0.3
SHMT1P1-201ENST00000419974 AGXT2Q9BYV1 514 aa16.93■□□□□ 0.3
SHMT1P1-201ENST00000419974 RNF41Q9H4P4 317 aaPredicted RBP16.93■□□□□ 0.3
SHMT1P1-201ENST00000419974 CNNM2Q9H8M5 875 aa16.93■□□□□ 0.3
SHMT1P1-201ENST00000419974 ROBO3Q96MS0 1386 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 DDNO94850 711 aaPredicted RBP16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 RPS6KB1P23443 525 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 CTR9Q6PD62 1173 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 BLOC1S2Q6QNY1 142 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 STOX1Q6ZVD7 989 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 DHX32Q7L7V1 743 aaKnown RBP16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 KIAA0825Q8IV33 1275 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 OGFOD1Q8N543 542 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 SDR42E1Q8WUS8 393 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 FBXW7Q969H0 707 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 ZBED3Q96IU2 234 aaPredicted RBP16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 JAKMIP1Q96N16 626 aaKnown RBP16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 TBC1D2Q9BYX2 928 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 NBPF3Q9H094 633 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 MYH2Q9UKX2 1941 aa16.92■□□□□ 0.3
SHMT1P1-201ENST00000419974 LAMA4Q16363 1823 aa16.91■□□□□ 0.3
SHMT1P1-201ENST00000419974 IQCA1LA6NCM1 817 aa16.91■□□□□ 0.3
SHMT1P1-201ENST00000419974 RAD17O75943 681 aa16.91■□□□□ 0.3
SHMT1P1-201ENST00000419974 USP17L8P0C7I0 530 aa16.91■□□□□ 0.3
SHMT1P1-201ENST00000419974 CASTP20810 708 aaKnown RBP16.91■□□□□ 0.3
SHMT1P1-201ENST00000419974 EIF6P56537 245 aaKnown RBP16.91■□□□□ 0.3
SHMT1P1-201ENST00000419974 EXOSC10Q01780 885 aaKnown RBP16.91■□□□□ 0.3
SHMT1P1-201ENST00000419974 ANKRD1Q15327 319 aa16.91■□□□□ 0.3
SHMT1P1-201ENST00000419974 AKNAD1Q5T1N1 836 aa16.91■□□□□ 0.3
SHMT1P1-201ENST00000419974 FKBP1CQ5VVH2 108 aa16.91■□□□□ 0.3
SHMT1P1-201ENST00000419974 TAF6LQ9Y6J9 622 aa16.91■□□□□ 0.3
SHMT1P1-201ENST00000419974 COL2A1P02458 1487 aaPredicted RBP16.9■□□□□ 0.3
SHMT1P1-201ENST00000419974 WDHD1O75717 1129 aaPredicted RBP16.9■□□□□ 0.3
SHMT1P1-201ENST00000419974 PPARAQ07869 468 aa16.9■□□□□ 0.3
SHMT1P1-201ENST00000419974 C12orf60Q5U649 245 aa16.9■□□□□ 0.3
SHMT1P1-201ENST00000419974 CDC42EP5Q6NZY7 148 aa16.9■□□□□ 0.3
SHMT1P1-201ENST00000419974 TEX11Q8IYF3 940 aa16.9■□□□□ 0.3
SHMT1P1-201ENST00000419974 DNAJC5GQ8N7S2 189 aa16.9■□□□□ 0.3
SHMT1P1-201ENST00000419974 NCOA7Q8NI08 942 aa16.9■□□□□ 0.3
SHMT1P1-201ENST00000419974 FLT1P17948 1338 aa16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 SPDYE2BA6NHP3 402 aa16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 USP17L12C9JPN9 530 aa16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 USP17L21D6R901 530 aa16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 K7ELQ4 463 aaPredicted RBP16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 SLC3A2P08195 630 aaKnown RBP16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 SPDYE6P0CI01 402 aa16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 USP5P45974 858 aa16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 EVCP57679 992 aa16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 TRDNQ13061 729 aa16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 HSCBQ8IWL3 235 aa16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 MB21D2Q8IYB1 491 aaPredicted RBP16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 GPC2Q8N158 579 aa16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 KRT23Q9C075 422 aa16.89■□□□□ 0.29
SHMT1P1-201ENST00000419974 SCN4AP35499 1836 aa16.88■□□□□ 0.29
SHMT1P1-201ENST00000419974 F8W031 263 aaPredicted RBP16.88■□□□□ 0.29
SHMT1P1-201ENST00000419974 ORC4O43929 436 aa16.88■□□□□ 0.29
SHMT1P1-201ENST00000419974 SCNN1DP51172 638 aa16.88■□□□□ 0.29
SHMT1P1-201ENST00000419974 CFAP100Q494V2 611 aa16.88■□□□□ 0.29
SHMT1P1-201ENST00000419974 TBC1D10CQ8IV04 446 aa16.88■□□□□ 0.29
SHMT1P1-201ENST00000419974 AMOTL1Q8IY63 956 aa16.88■□□□□ 0.29
SHMT1P1-201ENST00000419974 TGFBRAP1Q8WUH2 860 aa16.88■□□□□ 0.29
SHMT1P1-201ENST00000419974 UPF3BQ9BZI7 483 aaKnown RBP16.88■□□□□ 0.29
SHMT1P1-201ENST00000419974 PDRG1Q9NUG6 133 aa16.88■□□□□ 0.29
SHMT1P1-201ENST00000419974 USP40Q9NVE5 1235 aa16.88■□□□□ 0.29
SHMT1P1-201ENST00000419974 DDX60LQ5H9U9 1706 aaKnown RBP16.87■□□□□ 0.29
SHMT1P1-201ENST00000419974 ENTPD3O75355 529 aa16.87■□□□□ 0.29
SHMT1P1-201ENST00000419974 CD2BP2O95400 341 aaKnown RBP16.87■□□□□ 0.29
SHMT1P1-201ENST00000419974 MCM5P33992 734 aa16.87■□□□□ 0.29
SHMT1P1-201ENST00000419974 MFSD6Q6ZSS7 791 aa16.87■□□□□ 0.29
SHMT1P1-201ENST00000419974 METTL16Q86W50 562 aaKnown RBP16.87■□□□□ 0.29
SHMT1P1-201ENST00000419974 DHX36Q9H2U1 1008 aaKnown RBP16.87■□□□□ 0.29
SHMT1P1-201ENST00000419974 MCM9Q9NXL9 1143 aa16.87■□□□□ 0.29
SHMT1P1-201ENST00000419974 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.87■□□□□ 0.29
SHMT1P1-201ENST00000419974 ZNF541Q9H0D2 1346 aa16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 FOCADQ5VW36 1801 aa16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 HAND2P61296 217 aa16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 TMEM87BQ96K49 555 aa16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 PRMT6Q96LA8 375 aaPredicted RBP16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 ZSCAN31Q96LW9 406 aaPredicted RBP16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 EHD4Q9H223 541 aa16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 TAF1DQ9H5J8 278 aaPredicted RBP16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 ZNF287Q9HBT7 754 aa16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 LIMCH1Q9UPQ0 1083 aa16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 ZBTB12Q9Y330 459 aaPredicted RBP16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 ATRNL1Q5VV63 1379 aa16.86■□□□□ 0.29
SHMT1P1-201ENST00000419974 PDE4BQ07343 736 aa16.85■□□□□ 0.29
SHMT1P1-201ENST00000419974 CUL4AQ13619 759 aa16.85■□□□□ 0.29
SHMT1P1-201ENST00000419974 DLGAP5Q15398 846 aa16.85■□□□□ 0.29
SHMT1P1-201ENST00000419974 SPDYE2Q495Y8 402 aa16.85■□□□□ 0.29
SHMT1P1-201ENST00000419974 CHADLQ6NUI6 762 aa16.85■□□□□ 0.29
SHMT1P1-201ENST00000419974 RALYLQ86SE5 291 aaKnown RBP16.85■□□□□ 0.29
SHMT1P1-201ENST00000419974 TTC6Q86TZ1 520 aa16.85■□□□□ 0.29
SHMT1P1-201ENST00000419974 OSBPL5Q9H0X9 879 aaPredicted RBP16.85■□□□□ 0.29
SHMT1P1-201ENST00000419974 SH2B1Q9NRF2 756 aaPredicted RBP16.85■□□□□ 0.29
SHMT1P1-201ENST00000419974 LIFRP42702 1097 aa16.84■□□□□ 0.29
SHMT1P1-201ENST00000419974 AK2P54819 239 aa16.84■□□□□ 0.29
SHMT1P1-201ENST00000419974 GABPAQ06546 454 aa16.84■□□□□ 0.29
SHMT1P1-201ENST00000419974 C16orf86Q6ZW13 317 aa16.84■□□□□ 0.29
SHMT1P1-201ENST00000419974 FAM83AQ86UY5 434 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms