RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ANTXR1Q9H6X2 564 aa23.36■■□□□ 1.33
SF3A1-202ENST00000411423 SPDYE5A6NIY4 337 aa23.35■■□□□ 1.33
SF3A1-202ENST00000411423 HSP90AB4PQ58FF6 505 aa23.35■■□□□ 1.33
SF3A1-202ENST00000411423 DCAF15Q66K64 600 aa23.35■■□□□ 1.33
SF3A1-202ENST00000411423 ABHD8Q96I13 439 aa23.35■■□□□ 1.33
SF3A1-202ENST00000411423 CFHR5Q9BXR6 569 aa23.35■■□□□ 1.33
SF3A1-202ENST00000411423 CSADQ9Y600 493 aa23.35■■□□□ 1.33
SF3A1-202ENST00000411423 AK9Q5TCS8 1911 aa23.35■■□□□ 1.33
SF3A1-202ENST00000411423 GSTO1P78417 241 aa23.34■■□□□ 1.33
SF3A1-202ENST00000411423 SH3RF3Q8TEJ3 882 aaPredicted RBP23.34■■□□□ 1.33
SF3A1-202ENST00000411423 ZNF296Q8WUU4 475 aaPredicted RBP23.34■■□□□ 1.33
SF3A1-202ENST00000411423 BRI3BPQ8WY22 251 aa23.34■■□□□ 1.33
SF3A1-202ENST00000411423 KIF1BPQ96EK5 621 aa23.34■■□□□ 1.33
SF3A1-202ENST00000411423 PHF20L1A8MW92 1017 aa23.33■■□□□ 1.33
SF3A1-202ENST00000411423 HMMRO75330 724 aa23.33■■□□□ 1.33
SF3A1-202ENST00000411423 LDHCP07864 332 aa23.33■■□□□ 1.33
SF3A1-202ENST00000411423 INHBEP58166 350 aa23.33■■□□□ 1.33
SF3A1-202ENST00000411423 DGKZQ13574 1117 aa23.33■■□□□ 1.33
SF3A1-202ENST00000411423 NAA16Q6N069 864 aaPredicted RBP23.33■■□□□ 1.33
SF3A1-202ENST00000411423 HOOK2Q96ED9 719 aa23.33■■□□□ 1.33
SF3A1-202ENST00000411423 GPR25O00155 361 aa23.32■■□□□ 1.32
SF3A1-202ENST00000411423 AATFQ9NY61 560 aaKnown RBP eCLIP23.32■■□□□ 1.32
SF3A1-202ENST00000411423 IRF6O14896 467 aa23.31■■□□□ 1.32
SF3A1-202ENST00000411423 MAP3K10Q02779 954 aa23.31■■□□□ 1.32
SF3A1-202ENST00000411423 ERO1BQ86YB8 467 aa23.31■■□□□ 1.32
SF3A1-202ENST00000411423 BCL11AQ9H165 835 aa23.31■■□□□ 1.32
SF3A1-202ENST00000411423 CHMP4BQ9H444 224 aaKnown RBP23.31■■□□□ 1.32
SF3A1-202ENST00000411423 RAB11FIP3O75154 756 aa23.3■■□□□ 1.32
SF3A1-202ENST00000411423 RRP1P56182 461 aaKnown RBP23.3■■□□□ 1.32
SF3A1-202ENST00000411423 ZSCAN29Q8IWY8 852 aaPredicted RBP23.3■■□□□ 1.32
SF3A1-202ENST00000411423 CDK5RAP2Q96SN8 1893 aa23.3■■□□□ 1.32
SF3A1-202ENST00000411423 CCL15-CCL14A0A0B4J2E2 113 aa23.29■■□□□ 1.32
SF3A1-202ENST00000411423 FAM196BA6NMK8 535 aa23.29■■□□□ 1.32
SF3A1-202ENST00000411423 SMARCA5O60264 1052 aaPredicted RBP23.29■■□□□ 1.32
SF3A1-202ENST00000411423 NPM3O75607 178 aaKnown RBP23.29■■□□□ 1.32
SF3A1-202ENST00000411423 DYNLL1P63167 89 aaKnown RBP23.29■■□□□ 1.32
SF3A1-202ENST00000411423 CCL15Q16663 113 aa23.29■■□□□ 1.32
SF3A1-202ENST00000411423 NOL9Q5SY16 702 aaKnown RBP23.29■■□□□ 1.32
SF3A1-202ENST00000411423 TEX11Q8IYF3 940 aa23.29■■□□□ 1.32
SF3A1-202ENST00000411423 CLASRPQ8N2M8 674 aaKnown RBP23.29■■□□□ 1.32
SF3A1-202ENST00000411423 FAM43AQ8N2R8 423 aa23.29■■□□□ 1.32
SF3A1-202ENST00000411423 OSBPL5Q9H0X9 879 aaPredicted RBP23.29■■□□□ 1.32
SF3A1-202ENST00000411423 SIPA1L1O43166 1804 aa23.29■■□□□ 1.32
SF3A1-202ENST00000411423 ALDH1A1P00352 501 aa23.28■■□□□ 1.32
SF3A1-202ENST00000411423 GTF2A2P52657 109 aa23.28■■□□□ 1.32
SF3A1-202ENST00000411423 PPP4CP60510 307 aa23.28■■□□□ 1.32
SF3A1-202ENST00000411423 CRHR2Q13324 411 aa23.28■■□□□ 1.32
SF3A1-202ENST00000411423 PPIL2Q13356 520 aa23.28■■□□□ 1.32
SF3A1-202ENST00000411423 NOM1Q5C9Z4 860 aaKnown RBP23.28■■□□□ 1.32
SF3A1-202ENST00000411423 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.28■■□□□ 1.32
SF3A1-202ENST00000411423 IDH1O75874 414 aaKnown RBP23.27■■□□□ 1.32
SF3A1-202ENST00000411423 CAP1Q01518 475 aa23.27■■□□□ 1.32
SF3A1-202ENST00000411423 EDC3Q96F86 508 aaKnown RBP23.27■■□□□ 1.32
SF3A1-202ENST00000411423 PCDHB15Q9Y5E8 787 aa23.27■■□□□ 1.32
SF3A1-202ENST00000411423 FOCADQ5VW36 1801 aa23.26■■□□□ 1.31
SF3A1-202ENST00000411423 COL2A1P02458 1487 aaPredicted RBP23.26■■□□□ 1.31
SF3A1-202ENST00000411423 MAP4K4O95819 1239 aaPredicted RBP23.26■■□□□ 1.31
SF3A1-202ENST00000411423 CYP7A1P22680 504 aa23.26■■□□□ 1.31
SF3A1-202ENST00000411423 PPATQ06203 517 aa23.26■■□□□ 1.31
SF3A1-202ENST00000411423 RRP1BQ14684 758 aaKnown RBP23.26■■□□□ 1.31
SF3A1-202ENST00000411423 MAGEB6Q8N7X4 407 aa23.26■■□□□ 1.31
SF3A1-202ENST00000411423 BTBD19C9JJ37 291 aa23.25■■□□□ 1.31
SF3A1-202ENST00000411423 IFIT2P09913 472 aaKnown RBP23.25■■□□□ 1.31
SF3A1-202ENST00000411423 MOGSQ13724 837 aa23.25■■□□□ 1.31
SF3A1-202ENST00000411423 CTU1Q7Z7A3 348 aaKnown RBP23.25■■□□□ 1.31
SF3A1-202ENST00000411423 MAPKAPK5Q8IW41 473 aa23.25■■□□□ 1.31
SF3A1-202ENST00000411423 MIGA1Q8NAN2 632 aa23.25■■□□□ 1.31
SF3A1-202ENST00000411423 TGFBRAP1Q8WUH2 860 aa23.25■■□□□ 1.31
SF3A1-202ENST00000411423 FKTNO75072 461 aa23.24■■□□□ 1.31
SF3A1-202ENST00000411423 CCDC84Q86UT8 332 aaPredicted RBP23.24■■□□□ 1.31
SF3A1-202ENST00000411423 SCYL3Q8IZE3 742 aa23.24■■□□□ 1.31
SF3A1-202ENST00000411423 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.24■■□□□ 1.31
SF3A1-202ENST00000411423 KCNH4Q9UQ05 1017 aa23.24■■□□□ 1.31
SF3A1-202ENST00000411423 FLT1P17948 1338 aa23.24■■□□□ 1.31
SF3A1-202ENST00000411423 TBC1D12O60347 775 aa23.23■■□□□ 1.31
SF3A1-202ENST00000411423 BAG3O95817 575 aa23.23■■□□□ 1.31
SF3A1-202ENST00000411423 SNAPC2Q13487 334 aa23.23■■□□□ 1.31
SF3A1-202ENST00000411423 CRBNQ96SW2 442 aa23.23■■□□□ 1.31
SF3A1-202ENST00000411423 DNAJC2Q99543 621 aaKnown RBP23.23■■□□□ 1.31
SF3A1-202ENST00000411423 NOL10Q9BSC4 688 aaKnown RBP23.23■■□□□ 1.31
SF3A1-202ENST00000411423 DCTPP1Q9H773 170 aa23.23■■□□□ 1.31
SF3A1-202ENST00000411423 PHIPQ8WWQ0 1821 aa23.23■■□□□ 1.31
SF3A1-202ENST00000411423 DOCK1Q14185 1865 aa23.23■■□□□ 1.31
SF3A1-202ENST00000411423 IGSF3O75054 1194 aa23.22■■□□□ 1.31
SF3A1-202ENST00000411423 CETPP11597 493 aa23.22■■□□□ 1.31
SF3A1-202ENST00000411423 PTPRAP18433 802 aa23.22■■□□□ 1.31
SF3A1-202ENST00000411423 SLFNL1Q499Z3 407 aa23.22■■□□□ 1.31
SF3A1-202ENST00000411423 OTUD7BQ6GQQ9 843 aa23.22■■□□□ 1.31
SF3A1-202ENST00000411423 LRRCC1Q9C099 1032 aa23.22■■□□□ 1.31
SF3A1-202ENST00000411423 BOLA2Q9H3K6 86 aa23.22■■□□□ 1.31
SF3A1-202ENST00000411423 HTTP42858 3142 aa23.21■■□□□ 1.31
SF3A1-202ENST00000411423 CCDC85CA6NKD9 419 aa23.21■■□□□ 1.31
SF3A1-202ENST00000411423 GOLIM4O00461 696 aa23.21■■□□□ 1.31
SF3A1-202ENST00000411423 CHGBP05060 677 aa23.21■■□□□ 1.31
SF3A1-202ENST00000411423 DNAJC18Q9H819 358 aa23.21■■□□□ 1.31
SF3A1-202ENST00000411423 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.21■■□□□ 1.31
SF3A1-202ENST00000411423 PLCG2P16885 1265 aa23.2■■□□□ 1.3
SF3A1-202ENST00000411423 ATP5JP18859 108 aa23.2■■□□□ 1.3
SF3A1-202ENST00000411423 MAP3K12Q12852 859 aa23.2■■□□□ 1.3
SF3A1-202ENST00000411423 TAF1CQ15572 869 aaPredicted RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms