RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ZKSCAN1P17029 563 aaPredicted RBP21.51■■□□□ 1.03
SDC1-203ENST00000403076 HSPA4P34932 840 aa21.51■■□□□ 1.03
SDC1-203ENST00000403076 TCP10Q12799 353 aa21.51■■□□□ 1.03
SDC1-203ENST00000403076 CREB3L3Q68CJ9 461 aa21.51■■□□□ 1.03
SDC1-203ENST00000403076 IDI2Q9BXS1 227 aa21.51■■□□□ 1.03
SDC1-203ENST00000403076 DDX4Q9NQI0 724 aaKnown RBP21.51■■□□□ 1.03
SDC1-203ENST00000403076 ZNF213O14771 459 aa21.5■■□□□ 1.03
SDC1-203ENST00000403076 SLC27A2O14975 620 aa21.5■■□□□ 1.03
SDC1-203ENST00000403076 EPHX2P34913 555 aa21.5■■□□□ 1.03
SDC1-203ENST00000403076 HAND2P61296 217 aa21.5■■□□□ 1.03
SDC1-203ENST00000403076 SLC4A8Q2Y0W8 1093 aa21.5■■□□□ 1.03
SDC1-203ENST00000403076 CTR9Q6PD62 1173 aa21.5■■□□□ 1.03
SDC1-203ENST00000403076 ARPP21Q9UBL0 812 aaPredicted RBP21.5■■□□□ 1.03
SDC1-203ENST00000403076 MKRN1Q9UHC7 482 aaKnown RBP21.5■■□□□ 1.03
SDC1-203ENST00000403076 CYP2D7A0A087X1C5 515 aa21.49■■□□□ 1.03
SDC1-203ENST00000403076 ENTPD3O75355 529 aa21.49■■□□□ 1.03
SDC1-203ENST00000403076 TNNI2P48788 182 aa21.49■■□□□ 1.03
SDC1-203ENST00000403076 ZSCAN29Q8IWY8 852 aaPredicted RBP21.49■■□□□ 1.03
SDC1-203ENST00000403076 TBC1D32Q96NH3 1257 aa21.49■■□□□ 1.03
SDC1-203ENST00000403076 OSBPL5Q9H0X9 879 aaPredicted RBP21.49■■□□□ 1.03
SDC1-203ENST00000403076 FAM198AQ9UFP1 575 aa21.49■■□□□ 1.03
SDC1-203ENST00000403076 PALD1Q9ULE6 856 aa21.49■■□□□ 1.03
SDC1-203ENST00000403076 NPM3O75607 178 aaKnown RBP21.48■■□□□ 1.03
SDC1-203ENST00000403076 CYP21A2P08686 494 aa21.48■■□□□ 1.03
SDC1-203ENST00000403076 HIRAP54198 1017 aaPredicted RBP21.48■■□□□ 1.03
SDC1-203ENST00000403076 PPARAQ07869 468 aa21.48■■□□□ 1.03
SDC1-203ENST00000403076 TNFAIP1Q13829 316 aa21.48■■□□□ 1.03
SDC1-203ENST00000403076 SBK1Q52WX2 424 aa21.48■■□□□ 1.03
SDC1-203ENST00000403076 FKBP1CQ5VVH2 108 aa21.48■■□□□ 1.03
SDC1-203ENST00000403076 USP50Q70EL3 339 aaPredicted RBP21.48■■□□□ 1.03
SDC1-203ENST00000403076 ASTN2O75129 1339 aaPredicted RBP21.47■■□□□ 1.03
SDC1-203ENST00000403076 CYP2D6P10635 497 aa21.47■■□□□ 1.03
SDC1-203ENST00000403076 RBM25P49756 843 aaKnown RBP21.47■■□□□ 1.03
SDC1-203ENST00000403076 EAPPQ56P03 285 aaPredicted RBP21.47■■□□□ 1.03
SDC1-203ENST00000403076 ANGEL2Q5VTE6 544 aaKnown RBP21.47■■□□□ 1.03
SDC1-203ENST00000403076 RASEFQ8IZ41 740 aa21.47■■□□□ 1.03
SDC1-203ENST00000403076 TAF1DQ9H5J8 278 aaPredicted RBP21.47■■□□□ 1.03
SDC1-203ENST00000403076 ECM29Q5VYK3 1845 aa21.47■■□□□ 1.03
SDC1-203ENST00000403076 UTRNP46939 3433 aa21.46■■□□□ 1.03
SDC1-203ENST00000403076 HLA-DOAP06340 250 aa21.46■■□□□ 1.03
SDC1-203ENST00000403076 SLC3A2P08195 630 aaKnown RBP21.46■■□□□ 1.03
SDC1-203ENST00000403076 CTDSPL2Q05D32 466 aa21.46■■□□□ 1.03
SDC1-203ENST00000403076 C12orf60Q5U649 245 aa21.46■■□□□ 1.03
SDC1-203ENST00000403076 TTC6Q86TZ1 520 aa21.46■■□□□ 1.03
SDC1-203ENST00000403076 ZFPM1Q8IX07 1006 aa21.46■■□□□ 1.03
SDC1-203ENST00000403076 STK11IPQ8N1F8 1099 aa21.46■■□□□ 1.03
SDC1-203ENST00000403076 ZNF526Q8TF50 670 aaPredicted RBP21.46■■□□□ 1.03
SDC1-203ENST00000403076 RRAGCQ9HB90 399 aa21.46■■□□□ 1.03
SDC1-203ENST00000403076 GGA3Q9NZ52 723 aa21.46■■□□□ 1.03
SDC1-203ENST00000403076 SNX14Q9Y5W7 946 aa21.46■■□□□ 1.03
SDC1-203ENST00000403076 BAZ2AQ9UIF9 1905 aaKnown RBP21.46■■□□□ 1.03
SDC1-203ENST00000403076 CDK5RAP2Q96SN8 1893 aa21.46■■□□□ 1.03
SDC1-203ENST00000403076 ANAPC15P60006 121 aa21.45■■□□□ 1.02
SDC1-203ENST00000403076 APOBEC3FQ8IUX4 373 aaKnown RBP21.45■■□□□ 1.02
SDC1-203ENST00000403076 FAM151AQ8WW52 585 aa21.45■■□□□ 1.02
SDC1-203ENST00000403076 DHX36Q9H2U1 1008 aaKnown RBP21.45■■□□□ 1.02
SDC1-203ENST00000403076 POTECB2RU33 542 aa21.45■■□□□ 1.02
SDC1-203ENST00000403076 VEGFAP15692 232 aaPredicted RBP21.45■■□□□ 1.02
SDC1-203ENST00000403076 KRT32Q14532 448 aa21.45■■□□□ 1.02
SDC1-203ENST00000403076 FAM83AQ86UY5 434 aa21.45■■□□□ 1.02
SDC1-203ENST00000403076 PNMA8AQ86V59 439 aaPredicted RBP21.45■■□□□ 1.02
SDC1-203ENST00000403076 KCNB2Q92953 911 aa21.45■■□□□ 1.02
SDC1-203ENST00000403076 DCPSQ96C86 337 aaKnown RBP21.45■■□□□ 1.02
SDC1-203ENST00000403076 TOMM22Q9NS69 142 aa21.45■■□□□ 1.02
SDC1-203ENST00000403076 SCAF8Q9UPN6 1271 aaKnown RBP21.45■■□□□ 1.02
SDC1-203ENST00000403076 NAV1Q8NEY1 1877 aa21.44■■□□□ 1.02
SDC1-203ENST00000403076 WDR90Q96KV7 1748 aa21.44■■□□□ 1.02
SDC1-203ENST00000403076 PLCD1P51178 756 aa21.44■■□□□ 1.02
SDC1-203ENST00000403076 ANAPC4Q9UJX5 808 aa21.44■■□□□ 1.02
SDC1-203ENST00000403076 SCN4AP35499 1836 aa21.44■■□□□ 1.02
SDC1-203ENST00000403076 DDTLA6NHG4 134 aaPredicted RBP21.43■■□□□ 1.02
SDC1-203ENST00000403076 RASA3Q14644 834 aa21.43■■□□□ 1.02
SDC1-203ENST00000403076 MFSD6Q6ZSS7 791 aa21.43■■□□□ 1.02
SDC1-203ENST00000403076 TBC1D10CQ8IV04 446 aa21.43■■□□□ 1.02
SDC1-203ENST00000403076 TMEM39BQ9GZU3 492 aa21.43■■□□□ 1.02
SDC1-203ENST00000403076 RNF41Q9H4P4 317 aaPredicted RBP21.43■■□□□ 1.02
SDC1-203ENST00000403076 CLEC11AQ9Y240 323 aa21.43■■□□□ 1.02
SDC1-203ENST00000403076 TAF6LQ9Y6J9 622 aa21.43■■□□□ 1.02
SDC1-203ENST00000403076 CNTNAP1P78357 1384 aa21.43■■□□□ 1.02
SDC1-203ENST00000403076 MYH1P12882 1939 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 FOCADQ5VW36 1801 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 E7EWF7 191 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 SMIM22K7EJ46 135 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 PSMA5P28066 241 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 EVX2Q03828 476 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 TRDNQ13061 729 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 TSGA10IPQ3SY00 556 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 AKNAD1Q5T1N1 836 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 CRACR2BQ8N4Y2 399 aaPredicted RBP21.42■■□□□ 1.02
SDC1-203ENST00000403076 DYNLL2Q96FJ2 89 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 JAKMIP1Q96N16 626 aaKnown RBP21.42■■□□□ 1.02
SDC1-203ENST00000403076 CSRNP1Q96S65 589 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 TRIM34Q9BYJ4 488 aa21.42■■□□□ 1.02
SDC1-203ENST00000403076 PDE4BQ07343 736 aa21.41■■□□□ 1.02
SDC1-203ENST00000403076 RALYLQ86SE5 291 aaKnown RBP21.41■■□□□ 1.02
SDC1-203ENST00000403076 ZC3H15Q8WU90 426 aaKnown RBP21.41■■□□□ 1.02
SDC1-203ENST00000403076 NBPF3Q9H094 633 aa21.41■■□□□ 1.02
SDC1-203ENST00000403076 DEFB129Q9H1M3 183 aa21.41■■□□□ 1.02
SDC1-203ENST00000403076 PI4KBQ9UBF8 816 aa21.41■■□□□ 1.02
SDC1-203ENST00000403076 PITPNM2Q9BZ72 1349 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms