RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 HOXB7P09629 217 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 CEBPAP49715 358 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 TPD52P55327 224 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 CNNM4Q6P4Q7 775 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 ZNF219Q9P2Y4 722 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 ANGEL1Q9UNK9 670 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 COL17A1Q9UMD9 1497 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 ACTN4O43707 911 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 STMN1P16949 149 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 RAPGEF1Q13905 1077 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 CSRNP2Q9H175 543 aa11.47□□□□□ -0.57
LIMCH1-203ENST00000396595 GOLGA6CA6NDK9 693 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 GOLGA6DP0CG33 693 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 DIXDC1Q155Q3 683 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 MIER3Q7Z3K6 550 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 APBB1IPQ7Z5R6 666 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 IFT20Q8IY31 132 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 STMN2Q93045 179 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 EYA1Q99502 592 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 TRIM7Q9C029 511 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 VCX3BQ9H321 246 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 GOLGA6AQ9NYA3 693 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 MBD4O95243 580 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 INPP5BP32019 993 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 PDE4DQ08499 809 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 TTLL12Q14166 644 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 GPR161Q8N6U8 529 aaKnown RBP11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 CCDC110Q8TBZ0 833 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 UHRF1BP1LA0JNW5 1464 aa11.46□□□□□ -0.57
LIMCH1-203ENST00000396595 RNF123Q5XPI4 1314 aa11.46□□□□□ -0.58
LIMCH1-203ENST00000396595 SEC62Q99442 399 aaKnown RBP11.46□□□□□ -0.58
LIMCH1-203ENST00000396595 TXNDC16Q9P2K2 825 aa11.46□□□□□ -0.58
LIMCH1-203ENST00000396595 PLCH2O75038 1416 aa11.46□□□□□ -0.58
LIMCH1-203ENST00000396595 A0A1W2PP64 1363 aa11.46□□□□□ -0.58
LIMCH1-203ENST00000396595 EYA2O00167 538 aa11.46□□□□□ -0.58
LIMCH1-203ENST00000396595 EPB41P11171 864 aaKnown RBP11.46□□□□□ -0.58
LIMCH1-203ENST00000396595 RUFY4Q6ZNE9 571 aa11.46□□□□□ -0.58
LIMCH1-203ENST00000396595 PLIN2Q99541 437 aa11.46□□□□□ -0.58
LIMCH1-203ENST00000396595 NYXQ9GZU5 481 aa11.46□□□□□ -0.58
LIMCH1-203ENST00000396595 BIVM-ERCC5R4GMW8 1640 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 PFDN1O60925 122 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 ZNF202O95125 648 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 VIMP08670 466 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 PAK1Q13153 545 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 FAM173BQ6P4H8 233 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 NFATC2IPQ8NCF5 419 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 APPBP2Q92624 585 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 HDAC9Q9UKV0 1011 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 ABCC1P33527 1531 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 BRD1O95696 1058 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 PICALMQ13492 652 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 MAP7D1Q3KQU3 841 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 TNNI3KQ59H18 835 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 DCAF17Q5H9S7 520 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 DZIP3Q86Y13 1208 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 MORC4Q8TE76 937 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 NGLY1Q96IV0 654 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 DCAF5Q96JK2 942 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 FPGT-TNNI3KV9GXZ4 949 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 MAP7Q14244 749 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 G2E3Q7L622 706 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 DIS3L2Q8IYB7 885 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 CSGALNACT2Q8N6G5 542 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 NOX5Q96PH1 765 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 TM6SF1Q9BZW5 370 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 RIMS2Q9UQ26 1411 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 B4E1Z4 1266 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 SECISBP2LQ93073 1101 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 NFE2L3Q9Y4A8 694 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 UHRF1BP1Q6BDS2 1440 aa11.45□□□□□ -0.58
LIMCH1-203ENST00000396595 PARP1P09874 1014 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 HPDP32754 393 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 LETM2Q2VYF4 491 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 FRMD4BQ9Y2L6 1034 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 POLR2DO15514 142 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 MRPL12P52815 198 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 HELBQ8NG08 1087 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 ANKRD2Q9GZV1 360 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 A2MP01023 1474 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 TCOF1Q13428 1488 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 RNMTO43148 476 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 KRT9P35527 623 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 UTP14CQ5TAP6 766 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 CERS3Q8IU89 383 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 PPP2R5BQ15173 497 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 INF2Q27J81 1249 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 C17orf53Q8N3J3 647 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 SPOPO43791 374 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 GADD45BO75293 160 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 ARHGAP25P42331 645 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 CCDC14Q49A88 953 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 CCDC38Q502W7 563 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 ZBTB9Q96C00 473 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 RAPGEF6Q8TEU7 1601 aa11.44□□□□□ -0.58
LIMCH1-203ENST00000396595 GOLGA6BA6NDN3 693 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 CIB2O75838 187 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms