RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 MTERF4Q7Z6M4 381 aaKnown RBP11.15□□□□□ -0.62
COL6A3-204ENST00000392003 ANKRD18AQ8IVF6 992 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 IFNL3Q8IZI9 196 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 LINC00301Q8NCQ3 95 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 GNL3LQ9NVN8 582 aaKnown RBP11.15□□□□□ -0.62
COL6A3-204ENST00000392003 POLR3EQ9NVU0 708 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 SLC12A7Q9Y666 1083 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 NUP98P52948 1817 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 LTBP4Q8N2S1 1624 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 SNAP23O00161 211 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 RASGRF1Q13972 1273 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 RRP12Q5JTH9 1297 aaKnown RBP11.15□□□□□ -0.62
COL6A3-204ENST00000392003 APOA5Q6Q788 366 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 MFSD6Q6ZSS7 791 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 CYB5R4Q7L1T6 521 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 CCDC186Q7Z3E2 898 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 LINC00116Q8NCU8 138 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 TMX1Q9H3N1 280 aa11.15□□□□□ -0.62
COL6A3-204ENST00000392003 IQSEC3Q9UPP2 1182 aaPredicted RBP11.15□□□□□ -0.62
COL6A3-204ENST00000392003 A0A1B0GVL5 298 aa11.15□□□□□ -0.63
COL6A3-204ENST00000392003 PTGS1P23219 599 aa11.15□□□□□ -0.63
COL6A3-204ENST00000392003 RFC4P35249 363 aa11.15□□□□□ -0.63
COL6A3-204ENST00000392003 SLC20A2Q08357 652 aa11.15□□□□□ -0.63
COL6A3-204ENST00000392003 ANO1Q5XXA6 986 aa11.15□□□□□ -0.63
COL6A3-204ENST00000392003 ARMT1Q9H993 441 aa11.15□□□□□ -0.63
COL6A3-204ENST00000392003 CLIP2Q9UDT6 1046 aa11.15□□□□□ -0.63
COL6A3-204ENST00000392003 CLIC4Q9Y696 253 aa11.15□□□□□ -0.63
COL6A3-204ENST00000392003 TPM4P67936 248 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 ILDR1Q86SU0 546 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-204ENST00000392003 CCDC24Q8N4L8 307 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 WASF1Q92558 559 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 PRIMPOLQ96LW4 560 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 ABCF2Q9UG63 623 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 TCRBV5S4A2TA0A5A2 114 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 DYNC1I1O14576 645 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 RXRAP19793 462 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 KIF23Q02241 960 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-204ENST00000392003 SSRP1Q08945 709 aaKnown RBP11.14□□□□□ -0.63
COL6A3-204ENST00000392003 SNW1Q13573 536 aaKnown RBP11.14□□□□□ -0.63
COL6A3-204ENST00000392003 SAFBQ15424 915 aaKnown RBP eCLIP11.14□□□□□ -0.63
COL6A3-204ENST00000392003 CLEC4GQ6UXB4 293 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 ENGASEQ8NFI3 743 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 NLRP3Q96P20 1036 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 GEMIN8Q9NWZ8 242 aaKnown RBP11.14□□□□□ -0.63
COL6A3-204ENST00000392003 SLC4A4Q9Y6R1 1079 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 ERFEQ4G0M1 354 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 AXDND1Q5T1B0 1012 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-204ENST00000392003 AKNAD1Q5T1N1 836 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 CCDC144CPQ8IYA2 1237 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 ZNF710Q8N1W2 664 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 C17orf53Q8N3J3 647 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-204ENST00000392003 RNF41Q9H4P4 317 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-204ENST00000392003 SPATA31A6Q5VVP1 1343 aa11.14□□□□□ -0.63
COL6A3-204ENST00000392003 NWD2Q9ULI1 1742 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 KCNA4P22459 653 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 BCAMP50895 628 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 CTDSPL2Q05D32 466 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 KRT40Q6A162 431 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 TPTE2Q6XPS3 522 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 PTF1AQ7RTS3 328 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 TRIM22Q8IYM9 498 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 FMR1NBQ8N0W7 255 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-204ENST00000392003 FNBP4Q8N3X1 1017 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-204ENST00000392003 KIAA1524Q8TCG1 905 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 FBXW7Q969H0 707 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 SPTLC3Q9NUV7 552 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 SRP68Q9UHB9 627 aaKnown RBP11.13□□□□□ -0.63
COL6A3-204ENST00000392003 AKAP11Q9UKA4 1901 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 AFF2P51816 1311 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 C11orf57Q6ZUT1 292 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-204ENST00000392003 PLA2G4DQ86XP0 818 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 CERKQ8TCT0 537 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 GJD4Q96KN9 370 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-204ENST00000392003 NYXQ9GZU5 481 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 NBPF3Q9H094 633 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 NEDD4P46934 1319 aa11.13□□□□□ -0.63
COL6A3-204ENST00000392003 SLC3A2P08195 630 aaKnown RBP11.12□□□□□ -0.63
COL6A3-204ENST00000392003 HSPA1LP34931 641 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 LIFRP42702 1097 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 CHRNDQ07001 517 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 SGMS1Q86VZ5 419 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 SLC26A6Q9BXS9 759 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 RAI14Q9P0K7 980 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 PYCARDQ9ULZ3 195 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 CYP7A1P22680 504 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 NDUFA8P51970 172 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 CAVIN4Q5BKX8 364 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 TMTC2Q8N394 836 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 PHKBQ93100 1093 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 PRDM16Q9HAZ2 1276 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 GJB4Q9NTQ9 266 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 TRPC5Q9UL62 973 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-204ENST00000392003 MYH15Q9Y2K3 1946 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 CCDC196A0A1B0GTZ2 297 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 RPS6KA4O75676 772 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 NTSR2O95665 410 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 CDC25BP30305 580 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 WTAPQ15007 396 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 IQCB1Q15051 598 aa11.12□□□□□ -0.63
COL6A3-204ENST00000392003 TRAPPC3LQ5T215 181 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms