RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 BRAPQ7Z569 592 aa25.11■■□□□ 1.61
TRIM54-202ENST00000380075 GNL3LQ9NVN8 582 aaKnown RBP25.11■■□□□ 1.61
TRIM54-202ENST00000380075 ZNF804BA4D1E1 1349 aa25.11■■□□□ 1.61
TRIM54-202ENST00000380075 CTAGE5O15320 804 aa25.11■■□□□ 1.61
TRIM54-202ENST00000380075 PTMAP06454 111 aaKnown RBP25.11■■□□□ 1.61
TRIM54-202ENST00000380075 BCAMP50895 628 aa25.11■■□□□ 1.61
TRIM54-202ENST00000380075 RPS8P62241 208 aaKnown RBP25.11■■□□□ 1.61
TRIM54-202ENST00000380075 TYRO3Q06418 890 aa25.11■■□□□ 1.61
TRIM54-202ENST00000380075 FBXO18Q8NFZ0 1043 aa25.11■■□□□ 1.61
TRIM54-202ENST00000380075 DLEC1Q9Y238 1755 aa25.1■■□□□ 1.61
TRIM54-202ENST00000380075 CAVIN2O95810 425 aa25.1■■□□□ 1.61
TRIM54-202ENST00000380075 CYB5R4Q7L1T6 521 aa25.1■■□□□ 1.61
TRIM54-202ENST00000380075 SGMS1Q86VZ5 419 aa25.1■■□□□ 1.61
TRIM54-202ENST00000380075 USP28Q96RU2 1077 aa25.1■■□□□ 1.61
TRIM54-202ENST00000380075 BSDC1Q9NW68 430 aaPredicted RBP25.1■■□□□ 1.61
TRIM54-202ENST00000380075 NR1I2O75469 434 aa25.09■■□□□ 1.61
TRIM54-202ENST00000380075 BBOX1O75936 387 aa25.09■■□□□ 1.61
TRIM54-202ENST00000380075 FOSBP53539 338 aa25.09■■□□□ 1.61
TRIM54-202ENST00000380075 MTA3Q9BTC8 594 aa25.09■■□□□ 1.61
TRIM54-202ENST00000380075 KRT23Q9C075 422 aa25.09■■□□□ 1.61
TRIM54-202ENST00000380075 EPB41L4AQ9HCS5 686 aaPredicted RBP25.09■■□□□ 1.61
TRIM54-202ENST00000380075 RTEL1Q9NZ71 1219 aa25.09■■□□□ 1.61
TRIM54-202ENST00000380075 ADCY5O95622 1261 aa25.09■■□□□ 1.61
TRIM54-202ENST00000380075 LIFRP42702 1097 aa25.09■■□□□ 1.61
TRIM54-202ENST00000380075 METAP2P50579 478 aaKnown RBP eCLIP25.09■■□□□ 1.61
TRIM54-202ENST00000380075 CAMK4Q16566 473 aa25.09■■□□□ 1.61
TRIM54-202ENST00000380075 OLFM4Q6UX06 510 aa25.09■■□□□ 1.61
TRIM54-202ENST00000380075 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.09■■□□□ 1.61
TRIM54-202ENST00000380075 MRVI1Q9Y6F6 885 aa25.09■■□□□ 1.61
TRIM54-202ENST00000380075 TAF1P21675 1872 aa25.08■■□□□ 1.61
TRIM54-202ENST00000380075 B4E1Z4 1266 aa25.08■■□□□ 1.61
TRIM54-202ENST00000380075 SNAP23O00161 211 aa25.08■■□□□ 1.61
TRIM54-202ENST00000380075 PPEF1O14829 653 aaPredicted RBP25.08■■□□□ 1.61
TRIM54-202ENST00000380075 C21orf2O43822 256 aa25.08■■□□□ 1.61
TRIM54-202ENST00000380075 YBX3P16989 372 aaKnown RBP eCLIP25.08■■□□□ 1.61
TRIM54-202ENST00000380075 GSG1L2A8MUP6 293 aa25.07■■□□□ 1.6
TRIM54-202ENST00000380075 APOA5Q6Q788 366 aa25.07■■□□□ 1.6
TRIM54-202ENST00000380075 IGDCC4Q8TDY8 1250 aa25.07■■□□□ 1.6
TRIM54-202ENST00000380075 C7orf43Q8WVR3 580 aa25.07■■□□□ 1.6
TRIM54-202ENST00000380075 ARMT1Q9H993 441 aa25.07■■□□□ 1.6
TRIM54-202ENST00000380075 LRP2BPQ9P2M1 347 aa25.07■■□□□ 1.6
TRIM54-202ENST00000380075 NEDD4P46934 1319 aa25.07■■□□□ 1.6
TRIM54-202ENST00000380075 GUCY1B3Q02153 619 aa25.07■■□□□ 1.6
TRIM54-202ENST00000380075 AKNAD1Q5T1N1 836 aa25.07■■□□□ 1.6
TRIM54-202ENST00000380075 SASS6Q6UVJ0 657 aa25.07■■□□□ 1.6
TRIM54-202ENST00000380075 CCDC73Q6ZRK6 1079 aa25.07■■□□□ 1.6
TRIM54-202ENST00000380075 SLX4Q8IY92 1834 aa25.06■■□□□ 1.6
TRIM54-202ENST00000380075 BRCA1P38398 1863 aaKnown RBP25.06■■□□□ 1.6
TRIM54-202ENST00000380075 YEATS4O95619 227 aa25.06■■□□□ 1.6
TRIM54-202ENST00000380075 CCAR1Q8IX12 1150 aaKnown RBP25.06■■□□□ 1.6
TRIM54-202ENST00000380075 STAG1Q8WVM7 1258 aa25.05■■□□□ 1.6
TRIM54-202ENST00000380075 POLR3EQ9NVU0 708 aa25.05■■□□□ 1.6
TRIM54-202ENST00000380075 ZBTB43O43298 467 aa25.05■■□□□ 1.6
TRIM54-202ENST00000380075 CEBPZQ03701 1054 aaKnown RBP25.05■■□□□ 1.6
TRIM54-202ENST00000380075 GPR162Q16538 588 aa25.05■■□□□ 1.6
TRIM54-202ENST00000380075 CAVIN4Q5BKX8 364 aa25.05■■□□□ 1.6
TRIM54-202ENST00000380075 CKAP2LQ8IYA6 745 aa25.05■■□□□ 1.6
TRIM54-202ENST00000380075 KCNG4Q8TDN1 519 aa25.05■■□□□ 1.6
TRIM54-202ENST00000380075 LY9Q9HBG7 655 aa25.05■■□□□ 1.6
TRIM54-202ENST00000380075 SLC4A4Q9Y6R1 1079 aa25.05■■□□□ 1.6
TRIM54-202ENST00000380075 NID2Q14112 1375 aa25.05■■□□□ 1.6
TRIM54-202ENST00000380075 A0A1B0GUL6 1792 aa25.05■■□□□ 1.6
TRIM54-202ENST00000380075 A0A1W2PQ27 194 aa25.04■■□□□ 1.6
TRIM54-202ENST00000380075 A0A1W2PQ64 194 aa25.04■■□□□ 1.6
TRIM54-202ENST00000380075 A0A1W2PQD8 194 aa25.04■■□□□ 1.6
TRIM54-202ENST00000380075 TMEM67Q5HYA8 995 aa25.04■■□□□ 1.6
TRIM54-202ENST00000380075 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.04■■□□□ 1.6
TRIM54-202ENST00000380075 MFSD6Q6ZSS7 791 aa25.04■■□□□ 1.6
TRIM54-202ENST00000380075 RNF41Q9H4P4 317 aaPredicted RBP25.04■■□□□ 1.6
TRIM54-202ENST00000380075 ATP6V0A2Q9Y487 856 aa25.04■■□□□ 1.6
TRIM54-202ENST00000380075 TDO2P48775 406 aa25.04■■□□□ 1.6
TRIM54-202ENST00000380075 FAM160A1Q05DH4 1040 aa25.04■■□□□ 1.6
TRIM54-202ENST00000380075 LCORLQ8N3X6 602 aa25.04■■□□□ 1.6
TRIM54-202ENST00000380075 SEMA3EO15041 775 aa25.03■■□□□ 1.6
TRIM54-202ENST00000380075 OFD1O75665 1012 aa25.03■■□□□ 1.6
TRIM54-202ENST00000380075 ME1P48163 572 aa25.03■■□□□ 1.6
TRIM54-202ENST00000380075 SART3Q15020 963 aaKnown RBP25.03■■□□□ 1.6
TRIM54-202ENST00000380075 ADALQ6DHV7 355 aa25.03■■□□□ 1.6
TRIM54-202ENST00000380075 NFXL1Q6ZNB6 911 aa25.03■■□□□ 1.6
TRIM54-202ENST00000380075 SP8Q8IXZ3 490 aa25.03■■□□□ 1.6
TRIM54-202ENST00000380075 DENND2AQ9ULE3 1009 aa25.03■■□□□ 1.6
TRIM54-202ENST00000380075 MYSM1Q5VVJ2 828 aa25.02■■□□□ 1.6
TRIM54-202ENST00000380075 FTOQ9C0B1 505 aaKnown RBP eCLIP25.02■■□□□ 1.6
TRIM54-202ENST00000380075 STK36Q9NRP7 1315 aa25.02■■□□□ 1.6
TRIM54-202ENST00000380075 PPFIA3O75145 1194 aa25.02■■□□□ 1.6
TRIM54-202ENST00000380075 TPM3P06753 285 aa25.02■■□□□ 1.6
TRIM54-202ENST00000380075 RCAN1P53805 252 aa25.02■■□□□ 1.6
TRIM54-202ENST00000380075 KIF23Q02241 960 aaPredicted RBP25.02■■□□□ 1.6
TRIM54-202ENST00000380075 ANO6Q4KMQ2 910 aa25.02■■□□□ 1.6
TRIM54-202ENST00000380075 SYNE3Q6ZMZ3 975 aa25.02■■□□□ 1.6
TRIM54-202ENST00000380075 LINC00301Q8NCQ3 95 aa25.02■■□□□ 1.6
TRIM54-202ENST00000380075 ZSWIM5Q9P217 1185 aa25.02■■□□□ 1.6
TRIM54-202ENST00000380075 MINPP1Q9UNW1 487 aa25.02■■□□□ 1.6
TRIM54-202ENST00000380075 PDS5AQ29RF7 1337 aaKnown RBP25.01■■□□□ 1.59
TRIM54-202ENST00000380075 CHD4Q14839 1912 aa25.01■■□□□ 1.59
TRIM54-202ENST00000380075 GOLGA8AA7E2F4 631 aa25.01■■□□□ 1.59
TRIM54-202ENST00000380075 IFIT3O14879 490 aaKnown RBP25.01■■□□□ 1.59
TRIM54-202ENST00000380075 KINO60870 393 aaKnown RBP25.01■■□□□ 1.59
TRIM54-202ENST00000380075 CYP7A1P22680 504 aa25.01■■□□□ 1.59
TRIM54-202ENST00000380075 TMC4Q7Z404 712 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms