RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 RIOK3O14730 519 aaKnown RBP16.98■□□□□ 0.31
NPHP4-201ENST00000378156 ZBTB38Q8NAP3 1195 aaPredicted RBP16.98■□□□□ 0.31
NPHP4-201ENST00000378156 NOP2P46087 812 aaKnown RBP16.97■□□□□ 0.31
NPHP4-201ENST00000378156 CERS3Q8IU89 383 aa16.97■□□□□ 0.31
NPHP4-201ENST00000378156 NR1I2O75469 434 aa16.97■□□□□ 0.31
NPHP4-201ENST00000378156 EHBP1Q8NDI1 1231 aa16.97■□□□□ 0.31
NPHP4-201ENST00000378156 MAP4K1Q92918 833 aa16.97■□□□□ 0.31
NPHP4-201ENST00000378156 SRRTQ9BXP5 876 aaKnown RBP16.97■□□□□ 0.31
NPHP4-201ENST00000378156 CDC42BPBQ9Y5S2 1711 aa16.97■□□□□ 0.31
NPHP4-201ENST00000378156 PCCAP05165 728 aaPredicted RBP16.97■□□□□ 0.31
NPHP4-201ENST00000378156 SPECC1Q5M775 1068 aa16.97■□□□□ 0.31
NPHP4-201ENST00000378156 DSCC1Q9BVC3 393 aa16.97■□□□□ 0.31
NPHP4-201ENST00000378156 ARFGAP3Q9NP61 516 aa16.97■□□□□ 0.31
NPHP4-201ENST00000378156 V9GY48 417 aaPredicted RBP16.97■□□□□ 0.31
NPHP4-201ENST00000378156 RNF17Q9BXT8 1623 aaKnown RBP16.97■□□□□ 0.31
NPHP4-201ENST00000378156 MYCNP04198 464 aaPredicted RBP16.97■□□□□ 0.31
NPHP4-201ENST00000378156 KARSQ15046 597 aaKnown RBP16.97■□□□□ 0.31
NPHP4-201ENST00000378156 SPECC1LQ69YQ0 1117 aa16.97■□□□□ 0.31
NPHP4-201ENST00000378156 DPP8Q6V1X1 898 aaPredicted RBP16.97■□□□□ 0.31
NPHP4-201ENST00000378156 GIGYF2Q6Y7W6 1299 aaKnown RBP16.97■□□□□ 0.31
NPHP4-201ENST00000378156 CCDC113Q9H0I3 377 aa16.97■□□□□ 0.31
NPHP4-201ENST00000378156 SPHKAPQ2M3C7 1700 aa16.96■□□□□ 0.31
NPHP4-201ENST00000378156 TMCO5BA8MYB1 307 aa16.96■□□□□ 0.31
NPHP4-201ENST00000378156 ZNF202O95125 648 aa16.96■□□□□ 0.31
NPHP4-201ENST00000378156 MRPL12P52815 198 aaKnown RBP16.96■□□□□ 0.31
NPHP4-201ENST00000378156 DHX37Q8IY37 1157 aaKnown RBP16.96■□□□□ 0.31
NPHP4-201ENST00000378156 CCDC94Q9BW85 323 aaPredicted RBP16.96■□□□□ 0.31
NPHP4-201ENST00000378156 MNAT1P51948 309 aa16.96■□□□□ 0.31
NPHP4-201ENST00000378156 BICD1Q96G01 975 aa16.96■□□□□ 0.31
NPHP4-201ENST00000378156 DBNLQ9UJU6 430 aaKnown RBP16.96■□□□□ 0.3
NPHP4-201ENST00000378156 KCNH3Q9ULD8 1083 aa16.96■□□□□ 0.3
NPHP4-201ENST00000378156 JADE2Q9NQC1 790 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 MAST3O60307 1309 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 ZNF174Q15697 407 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 GPATCH11Q8N954 259 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 USP28Q96RU2 1077 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 TAOK3Q9H2K8 898 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 VWA3AA6NCI4 1184 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 IGSF3O75054 1194 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 DIS3L2Q8IYB7 885 aaKnown RBP16.95■□□□□ 0.3
NPHP4-201ENST00000378156 MYRIPQ8NFW9 859 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 LZTFL1Q9NQ48 299 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 NEBLO76041 1014 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 CYLC1P35663 651 aaPredicted RBP16.95■□□□□ 0.3
NPHP4-201ENST00000378156 TUBB4BP68371 445 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 IPO4Q8TEX9 1081 aaKnown RBP16.95■□□□□ 0.3
NPHP4-201ENST00000378156 TSC1Q92574 1164 aa16.95■□□□□ 0.3
NPHP4-201ENST00000378156 ERBB3P21860 1342 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 LETM2Q2VYF4 491 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 LRRC24Q50LG9 513 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 KRT40Q6A162 431 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 USP37Q86T82 979 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 HAUS7Q99871 368 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 MMRN2Q9H8L6 949 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 COPRSQ9NQ92 184 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 MACROD2A1Z1Q3 448 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 H0YIN7 160 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 CCDC172P0C7W6 258 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 PPP2R5BQ15173 497 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 ASAP1Q9ULH1 1129 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 HSPD1P10809 573 aaKnown RBP16.94■□□□□ 0.3
NPHP4-201ENST00000378156 CTDSPL2Q05D32 466 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 LOC102724428A0A0B4J2F2 783 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 ZNF500O60304 480 aaPredicted RBP16.94■□□□□ 0.3
NPHP4-201ENST00000378156 NF2P35240 595 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 SIK1P57059 783 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 ZNF589Q86UQ0 364 aaPredicted RBP16.94■□□□□ 0.3
NPHP4-201ENST00000378156 TICAM2Q86XR7 235 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 GPCPD1Q9NPB8 672 aa16.94■□□□□ 0.3
NPHP4-201ENST00000378156 CPSF1Q10570 1443 aaKnown RBP16.93■□□□□ 0.3
NPHP4-201ENST00000378156 GLI2P10070 1586 aa16.93■□□□□ 0.3
NPHP4-201ENST00000378156 SH2D4AQ9H788 454 aa16.93■□□□□ 0.3
NPHP4-201ENST00000378156 KRT13P13646 458 aa16.93■□□□□ 0.3
NPHP4-201ENST00000378156 FANCCQ00597 558 aa16.93■□□□□ 0.3
NPHP4-201ENST00000378156 MAP3K15Q6ZN16 1313 aa16.93■□□□□ 0.3
NPHP4-201ENST00000378156 ABCA6Q8N139 1617 aa16.93■□□□□ 0.3
NPHP4-201ENST00000378156 TBC1D22AQ8WUA7 517 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 ZBTB9Q96C00 473 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 PLIN2Q99541 437 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 ARHGAP31Q2M1Z3 1444 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 WDR17Q8IZU2 1322 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 CKAP4Q07065 602 aaKnown RBP16.92■□□□□ 0.3
NPHP4-201ENST00000378156 HLTFQ14527 1009 aaKnown RBP eCLIP16.92■□□□□ 0.3
NPHP4-201ENST00000378156 GSTTP1A0A1W2PQM5 241 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 POLR2DO15514 142 aaKnown RBP16.92■□□□□ 0.3
NPHP4-201ENST00000378156 GTF2A1P52655 376 aaPredicted RBP16.92■□□□□ 0.3
NPHP4-201ENST00000378156 EIF6P56537 245 aaKnown RBP16.92■□□□□ 0.3
NPHP4-201ENST00000378156 MCM6Q14566 821 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 PLS1Q14651 629 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 CTNNBL1Q8WYA6 563 aaPredicted RBP16.92■□□□□ 0.3
NPHP4-201ENST00000378156 CLEC11AQ9Y240 323 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 E9PCH4 1651 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 BICDL2A1A5D9 508 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 LARGE1O95461 756 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 AKNAD1Q5T1N1 836 aa16.92■□□□□ 0.3
NPHP4-201ENST00000378156 B4DLN1 442 aa16.91■□□□□ 0.3
NPHP4-201ENST00000378156 PFKFB2O60825 505 aa16.91■□□□□ 0.3
NPHP4-201ENST00000378156 PI4K2BQ8TCG2 481 aa16.91■□□□□ 0.3
NPHP4-201ENST00000378156 APBA3O96018 575 aa16.91■□□□□ 0.3
NPHP4-201ENST00000378156 LRMPQ12912 555 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms