RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 CASC4Q6P4E1 433 aa15.33■□□□□ 0.04
COL4A1-201ENST00000375820 MGARPQ8TDB4 240 aa15.33■□□□□ 0.04
COL4A1-201ENST00000375820 ANO3Q9BYT9 981 aa15.33■□□□□ 0.04
COL4A1-201ENST00000375820 ALDH1L1O75891 902 aa15.33■□□□□ 0.04
COL4A1-201ENST00000375820 SATB1Q01826 763 aa15.33■□□□□ 0.04
COL4A1-201ENST00000375820 HDXQ7Z353 690 aa15.33■□□□□ 0.04
COL4A1-201ENST00000375820 CHMLP26374 656 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 CCDC110Q8TBZ0 833 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 PHKBQ93100 1093 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 BLZF1Q9H2G9 400 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 NCKAP5LQ9HCH0 1330 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 MAN1A1P33908 653 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 CLUL1Q15846 466 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 RDH13Q8NBN7 331 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 JAKMIP2Q96AA8 810 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 MKRN1Q9UHC7 482 aaKnown RBP15.32■□□□□ 0.04
COL4A1-201ENST00000375820 MYL5Q02045 173 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 KIFAP3Q92845 792 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 CLGNO14967 610 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 IL2RBP14784 551 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 RPL13P26373 211 aaKnown RBP15.32■□□□□ 0.04
COL4A1-201ENST00000375820 ALDH3A1P30838 453 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 ITIH3Q06033 890 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 C8orf74Q6P047 294 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 CCDC26Q8TAB7 109 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 ARHGEF2Q92974 986 aaKnown RBP15.32■□□□□ 0.04
COL4A1-201ENST00000375820 ELP1O95163 1332 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 ANKRD36BQ8N2N9 1353 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 GTPBP4Q9BZE4 634 aaKnown RBP15.32■□□□□ 0.04
COL4A1-201ENST00000375820 NACA2Q9H009 215 aa15.32■□□□□ 0.04
COL4A1-201ENST00000375820 LACTBP83111 547 aaPredicted RBP15.31■□□□□ 0.04
COL4A1-201ENST00000375820 PLEKHM2Q8IWE5 1019 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 C14orf93Q9H972 538 aaKnown RBP15.31■□□□□ 0.04
COL4A1-201ENST00000375820 AFG3L2Q9Y4W6 797 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 RBM28Q9NW13 759 aaKnown RBP15.31■□□□□ 0.04
COL4A1-201ENST00000375820 TAB2Q9NYJ8 693 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 UTP11Q9Y3A2 253 aaKnown RBP15.31■□□□□ 0.04
COL4A1-201ENST00000375820 KIF14Q15058 1648 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 IFT140Q96RY7 1462 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 IL16Q14005 1332 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 ITGA6P23229 1130 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 STRN3Q13033 797 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 PICK1Q9NRD5 415 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 POLKQ9UBT6 870 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.31■□□□□ 0.04
COL4A1-201ENST00000375820 NOP56O00567 594 aaKnown RBP15.31■□□□□ 0.04
COL4A1-201ENST00000375820 G2E3Q7L622 706 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 CADPS2Q86UW7 1296 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 CNGA4Q8IV77 575 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 CCDC170Q8IYT3 715 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 B4DLN1 442 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 CLCN1P35523 988 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 MRPL12P52815 198 aaKnown RBP15.31■□□□□ 0.04
COL4A1-201ENST00000375820 BRAPQ7Z569 592 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 CSGALNACT2Q8N6G5 542 aa15.31■□□□□ 0.04
COL4A1-201ENST00000375820 PRXQ9BXM0 1461 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 NEDD9Q14511 834 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 SYNRGQ9UMZ2 1314 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 PLCG2P16885 1265 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 POLD1P28340 1107 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 AFAP1L1Q8TED9 768 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 FAM227BQ96M60 508 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 CARD6Q9BX69 1037 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 DHX29Q7Z478 1369 aaKnown RBP15.3■□□□□ 0.04
COL4A1-201ENST00000375820 A0A1B0GUL7 405 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 ZNF365Q70YC5 407 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 RBM17Q96I25 401 aaKnown RBP15.3■□□□□ 0.04
COL4A1-201ENST00000375820 ASIC3Q9UHC3 531 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 NAPGQ99747 312 aaPredicted RBP15.3■□□□□ 0.04
COL4A1-201ENST00000375820 RBSNQ9H1K0 784 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 KCNJ14Q9UNX9 436 aa15.3■□□□□ 0.04
COL4A1-201ENST00000375820 SDCCAG8Q86SQ7 713 aaPredicted RBP15.3■□□□□ 0.04
COL4A1-201ENST00000375820 TRMT44Q8IYL2 757 aaKnown RBP15.3■□□□□ 0.04
COL4A1-201ENST00000375820 GPR161Q8N6U8 529 aaKnown RBP15.3■□□□□ 0.04
COL4A1-201ENST00000375820 NCOA1Q15788 1441 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 TXNDC9O14530 226 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 PCK1P35558 622 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 ARHGAP44Q17R89 818 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 TAB3Q8N5C8 712 aaPredicted RBP15.29■□□□□ 0.04
COL4A1-201ENST00000375820 TTC41PQ6P2S7 1318 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 ATP11AP98196 1134 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 CMTR1Q8N1G2 835 aaKnown RBP15.29■□□□□ 0.04
COL4A1-201ENST00000375820 ARHGAP45Q92619 1136 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 FAM114A2Q9NRY5 505 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 CEP104O60308 925 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 SMTNP53814 917 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 SEPT6Q14141 434 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 MYCT1Q8N699 235 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 PHACTR3Q96KR7 559 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 CCDC94Q9BW85 323 aaPredicted RBP15.29■□□□□ 0.04
COL4A1-201ENST00000375820 TMOD4Q9NZQ9 345 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 TACC3Q9Y6A5 838 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 SLC27A2O14975 620 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 GCNT3O95395 438 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 RPS6KB1P23443 525 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 CTTNBP2NLQ9P2B4 639 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 KCNH3Q9ULD8 1083 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 NSD2O96028 1365 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 ARHGEF35A5YM69 484 aa15.29■□□□□ 0.04
COL4A1-201ENST00000375820 FYB2Q5VWT5 728 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms