RNA–Protein interactions for RNA: ENST00000374399.8

NIPAL3-204, Transcript of NIPA like domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPAL3, Length 1,711 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-204ENST00000374399 ZNF277Q9NRM2 450 aaPredicted RBP18.55■□□□□ 0.56
NIPAL3-204ENST00000374399 TTF2Q9UNY4 1162 aaKnown RBP18.55■□□□□ 0.56
NIPAL3-204ENST00000374399 USP17L3A6NCW0 530 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 USP17L4A6NCW7 530 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 MFSD6Q6ZSS7 791 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 USP17L1Q7RTZ2 530 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 ZSWIM5Q9P217 1185 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 BRPF3Q9ULD4 1205 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 USP17L8P0C7I0 530 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 TRDNQ13061 729 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 IGDCC4Q8TDY8 1250 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 TGFBRAP1Q8WUH2 860 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 GTF3C6Q969F1 213 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 SENP2Q9HC62 589 aa18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 PPP1R1BQ9UD71 204 aaPredicted RBP18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.54■□□□□ 0.56
NIPAL3-204ENST00000374399 SH2B2O14492 632 aaPredicted RBP18.53■□□□□ 0.56
NIPAL3-204ENST00000374399 PFKFB2O60825 505 aa18.53■□□□□ 0.56
NIPAL3-204ENST00000374399 KDM4AO75164 1064 aa18.53■□□□□ 0.56
NIPAL3-204ENST00000374399 SCNN1DP51172 638 aa18.53■□□□□ 0.56
NIPAL3-204ENST00000374399 STK3Q13188 491 aa18.53■□□□□ 0.56
NIPAL3-204ENST00000374399 NFKBIBQ15653 356 aa18.53■□□□□ 0.56
NIPAL3-204ENST00000374399 SLF2Q8IX21 1173 aa18.53■□□□□ 0.56
NIPAL3-204ENST00000374399 STK11IPQ8N1F8 1099 aa18.53■□□□□ 0.56
NIPAL3-204ENST00000374399 ECM29Q5VYK3 1845 aa18.53■□□□□ 0.56
NIPAL3-204ENST00000374399 PDIA3P30101 505 aaKnown RBP18.52■□□□□ 0.56
NIPAL3-204ENST00000374399 SCRN1Q12765 414 aa18.52■□□□□ 0.56
NIPAL3-204ENST00000374399 SOGA3Q5TF21 947 aa18.52■□□□□ 0.56
NIPAL3-204ENST00000374399 APOBEC3HQ6NTF7 200 aaKnown RBP18.52■□□□□ 0.56
NIPAL3-204ENST00000374399 HHIPL2Q6UWX4 724 aa18.52■□□□□ 0.56
NIPAL3-204ENST00000374399 CERS3Q8IU89 383 aa18.52■□□□□ 0.56
NIPAL3-204ENST00000374399 NLGN2Q8NFZ4 835 aa18.52■□□□□ 0.56
NIPAL3-204ENST00000374399 TNPO1Q92973 898 aaKnown RBP18.52■□□□□ 0.56
NIPAL3-204ENST00000374399 CNNM2Q9H8M5 875 aa18.52■□□□□ 0.56
NIPAL3-204ENST00000374399 ARPP21Q9UBL0 812 aaPredicted RBP18.52■□□□□ 0.56
NIPAL3-204ENST00000374399 MYH1P12882 1939 aa18.52■□□□□ 0.56
NIPAL3-204ENST00000374399 NFKBIEO00221 500 aa18.52■□□□□ 0.55
NIPAL3-204ENST00000374399 C12orf60Q5U649 245 aa18.52■□□□□ 0.55
NIPAL3-204ENST00000374399 ILDR2Q71H61 639 aa18.52■□□□□ 0.55
NIPAL3-204ENST00000374399 ZNF274Q96GC6 653 aaPredicted RBP18.52■□□□□ 0.55
NIPAL3-204ENST00000374399 KRT23Q9C075 422 aa18.52■□□□□ 0.55
NIPAL3-204ENST00000374399 VPS33BQ9H267 617 aa18.52■□□□□ 0.55
NIPAL3-204ENST00000374399 MCM9Q9NXL9 1143 aa18.52■□□□□ 0.55
NIPAL3-204ENST00000374399 HPS5Q9UPZ3 1129 aa18.52■□□□□ 0.55
NIPAL3-204ENST00000374399 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.52■□□□□ 0.55
NIPAL3-204ENST00000374399 PCDHAC2Q9Y5I4 1007 aa18.52■□□□□ 0.55
NIPAL3-204ENST00000374399 ARFGEF1Q9Y6D6 1849 aa18.51■□□□□ 0.55
NIPAL3-204ENST00000374399 USP5P45974 858 aa18.51■□□□□ 0.55
NIPAL3-204ENST00000374399 FGD1P98174 961 aa18.51■□□□□ 0.55
NIPAL3-204ENST00000374399 KIAA0825Q8IV33 1275 aa18.51■□□□□ 0.55
NIPAL3-204ENST00000374399 MAPKAPK5Q8IW41 473 aa18.51■□□□□ 0.55
NIPAL3-204ENST00000374399 KLHL34Q8N239 644 aa18.51■□□□□ 0.55
NIPAL3-204ENST00000374399 NOL10Q9BSC4 688 aaKnown RBP18.51■□□□□ 0.55
NIPAL3-204ENST00000374399 MRIQ9BWK5 157 aa18.51■□□□□ 0.55
NIPAL3-204ENST00000374399 RNF41Q9H4P4 317 aaPredicted RBP18.51■□□□□ 0.55
NIPAL3-204ENST00000374399 CTDNEP1O95476 244 aa18.5■□□□□ 0.55
NIPAL3-204ENST00000374399 CRKP46108 304 aa18.5■□□□□ 0.55
NIPAL3-204ENST00000374399 TEX11Q8IYF3 940 aa18.5■□□□□ 0.55
NIPAL3-204ENST00000374399 LARGE2Q8N3Y3 721 aa18.5■□□□□ 0.55
NIPAL3-204ENST00000374399 LY9Q9HBG7 655 aa18.5■□□□□ 0.55
NIPAL3-204ENST00000374399 ANGEL1Q9UNK9 670 aaKnown RBP18.5■□□□□ 0.55
NIPAL3-204ENST00000374399 FLT1P17948 1338 aa18.5■□□□□ 0.55
NIPAL3-204ENST00000374399 ROBO3Q96MS0 1386 aa18.5■□□□□ 0.55
NIPAL3-204ENST00000374399 WDHD1O75717 1129 aaPredicted RBP18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 PLCG2P16885 1265 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 GJB2P29033 226 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 NUCB2P80303 420 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 SLC4A8Q2Y0W8 1093 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 RRP12Q5JTH9 1297 aaKnown RBP18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 TMEM87BQ96K49 555 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 ORC4O43929 436 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 PRDM1O75626 825 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 BRD1O95696 1058 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 IARSP41252 1262 aaKnown RBP18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 PLCD1P51178 756 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 HDLBPQ00341 1268 aaKnown RBP18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 CDC42EP5Q6NZY7 148 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 SGMS1Q86VZ5 419 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 TEKT1Q969V4 418 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 ZDHHC15Q96MV8 337 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 GMLQ99445 158 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 DDX4Q9NQI0 724 aaKnown RBP18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 SMC3Q9UQE7 1217 aa18.49■□□□□ 0.55
NIPAL3-204ENST00000374399 KLF18A0A0U1RQI7 1052 aa18.48■□□□□ 0.55
NIPAL3-204ENST00000374399 JAK2O60674 1132 aa18.48■□□□□ 0.55
NIPAL3-204ENST00000374399 PCP11498 1178 aaKnown RBP18.48■□□□□ 0.55
NIPAL3-204ENST00000374399 PRELPP51888 382 aa18.48■□□□□ 0.55
NIPAL3-204ENST00000374399 DYNLL2Q96FJ2 89 aa18.48■□□□□ 0.55
NIPAL3-204ENST00000374399 NCOA5Q9HCD5 579 aaKnown RBP18.48■□□□□ 0.55
NIPAL3-204ENST00000374399 SAP30BPQ9UHR5 308 aaKnown RBP18.48■□□□□ 0.55
NIPAL3-204ENST00000374399 BCS1LQ9Y276 419 aa18.48■□□□□ 0.55
NIPAL3-204ENST00000374399 PSMD14O00487 310 aa18.47■□□□□ 0.55
NIPAL3-204ENST00000374399 RAD17O75943 681 aa18.47■□□□□ 0.55
NIPAL3-204ENST00000374399 VIL1P09327 827 aaKnown RBP18.47■□□□□ 0.55
NIPAL3-204ENST00000374399 LIFRP42702 1097 aa18.47■□□□□ 0.55
NIPAL3-204ENST00000374399 CCT2P78371 535 aaKnown RBP18.47■□□□□ 0.55
NIPAL3-204ENST00000374399 SEC23AQ15436 765 aa18.47■□□□□ 0.55
NIPAL3-204ENST00000374399 SMARCC2Q8TAQ2 1214 aa18.47■□□□□ 0.55
NIPAL3-204ENST00000374399 ZKSCAN3Q9BRR0 538 aa18.47■□□□□ 0.55
NIPAL3-204ENST00000374399 TAOK3Q9H2K8 898 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms