RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 NDUFB9Q9Y6M9 179 aa23.18■■□□□ 1.3
CKS1B-203ENST00000368439 NPM3O75607 178 aaKnown RBP23.17■■□□□ 1.3
CKS1B-203ENST00000368439 MAP4K4O95819 1239 aaPredicted RBP23.17■■□□□ 1.3
CKS1B-203ENST00000368439 INHBEP58166 350 aa23.17■■□□□ 1.3
CKS1B-203ENST00000368439 CFHR5Q9BXR6 569 aa23.17■■□□□ 1.3
CKS1B-203ENST00000368439 CSADQ9Y600 493 aa23.17■■□□□ 1.3
CKS1B-203ENST00000368439 TESPA1A2RU30 521 aaPredicted RBP23.16■■□□□ 1.3
CKS1B-203ENST00000368439 DDTLA6NHG4 134 aaPredicted RBP23.16■■□□□ 1.3
CKS1B-203ENST00000368439 SPDYE5A6NIY4 337 aa23.16■■□□□ 1.3
CKS1B-203ENST00000368439 IGF2BP3O00425 579 aaKnown RBP eCLIP23.16■■□□□ 1.3
CKS1B-203ENST00000368439 NAA16Q6N069 864 aaPredicted RBP23.16■■□□□ 1.3
CKS1B-203ENST00000368439 IFNL1Q8IU54 200 aa23.16■■□□□ 1.3
CKS1B-203ENST00000368439 MS4A4AQ96JQ5 239 aa23.16■■□□□ 1.3
CKS1B-203ENST00000368439 ANTXR1Q9H6X2 564 aa23.16■■□□□ 1.3
CKS1B-203ENST00000368439 TBC1D8O95759 1140 aa23.15■■□□□ 1.3
CKS1B-203ENST00000368439 INPP5BP32019 993 aa23.15■■□□□ 1.3
CKS1B-203ENST00000368439 MAP3K10Q02779 954 aa23.15■■□□□ 1.3
CKS1B-203ENST00000368439 PICALMQ13492 652 aa23.15■■□□□ 1.3
CKS1B-203ENST00000368439 COL2A1P02458 1487 aaPredicted RBP23.14■■□□□ 1.29
CKS1B-203ENST00000368439 PPP4CP60510 307 aa23.14■■□□□ 1.29
CKS1B-203ENST00000368439 SH3RF3Q8TEJ3 882 aaPredicted RBP23.14■■□□□ 1.29
CKS1B-203ENST00000368439 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.14■■□□□ 1.29
CKS1B-203ENST00000368439 PTPN18Q99952 460 aa23.14■■□□□ 1.29
CKS1B-203ENST00000368439 R3HDMLQ9H3Y0 253 aa23.14■■□□□ 1.29
CKS1B-203ENST00000368439 SIPA1L1O43166 1804 aa23.13■■□□□ 1.29
CKS1B-203ENST00000368439 PHF20L1A8MW92 1017 aa23.13■■□□□ 1.29
CKS1B-203ENST00000368439 SLURP2P0DP57 97 aa23.13■■□□□ 1.29
CKS1B-203ENST00000368439 ERO1BQ86YB8 467 aa23.13■■□□□ 1.29
CKS1B-203ENST00000368439 OTUD5Q96G74 571 aa23.13■■□□□ 1.29
CKS1B-203ENST00000368439 DCTPP1Q9H773 170 aa23.13■■□□□ 1.29
CKS1B-203ENST00000368439 AATFQ9NY61 560 aaKnown RBP eCLIP23.13■■□□□ 1.29
CKS1B-203ENST00000368439 IFIT2P09913 472 aaKnown RBP23.12■■□□□ 1.29
CKS1B-203ENST00000368439 NOM1Q5C9Z4 860 aaKnown RBP23.12■■□□□ 1.29
CKS1B-203ENST00000368439 NOL9Q5SY16 702 aaKnown RBP23.12■■□□□ 1.29
CKS1B-203ENST00000368439 PCDHB15Q9Y5E8 787 aa23.12■■□□□ 1.29
CKS1B-203ENST00000368439 ALDH1A1P00352 501 aa23.11■■□□□ 1.29
CKS1B-203ENST00000368439 ZSCAN29Q8IWY8 852 aaPredicted RBP23.11■■□□□ 1.29
CKS1B-203ENST00000368439 TEX11Q8IYF3 940 aa23.11■■□□□ 1.29
CKS1B-203ENST00000368439 BRI3BPQ8WY22 251 aa23.11■■□□□ 1.29
CKS1B-203ENST00000368439 LRRCC1Q9C099 1032 aa23.11■■□□□ 1.29
CKS1B-203ENST00000368439 OSBPL5Q9H0X9 879 aaPredicted RBP23.11■■□□□ 1.29
CKS1B-203ENST00000368439 IDH1O75874 414 aaKnown RBP23.1■■□□□ 1.29
CKS1B-203ENST00000368439 BAG3O95817 575 aa23.1■■□□□ 1.29
CKS1B-203ENST00000368439 DOCK1Q14185 1865 aa23.1■■□□□ 1.29
CKS1B-203ENST00000368439 GPR25O00155 361 aa23.09■■□□□ 1.29
CKS1B-203ENST00000368439 IRF6O14896 467 aa23.09■■□□□ 1.29
CKS1B-203ENST00000368439 SMARCA5O60264 1052 aaPredicted RBP23.09■■□□□ 1.29
CKS1B-203ENST00000368439 CYP7A1P22680 504 aa23.09■■□□□ 1.29
CKS1B-203ENST00000368439 GTF2A2P52657 109 aa23.09■■□□□ 1.29
CKS1B-203ENST00000368439 PPATQ06203 517 aa23.09■■□□□ 1.29
CKS1B-203ENST00000368439 PPIL2Q13356 520 aa23.09■■□□□ 1.29
CKS1B-203ENST00000368439 ZNF296Q8WUU4 475 aaPredicted RBP23.09■■□□□ 1.29
CKS1B-203ENST00000368439 NOL10Q9BSC4 688 aaKnown RBP23.09■■□□□ 1.29
CKS1B-203ENST00000368439 PHIPQ8WWQ0 1821 aa23.09■■□□□ 1.29
CKS1B-203ENST00000368439 TBC1D12O60347 775 aa23.08■■□□□ 1.29
CKS1B-203ENST00000368439 PLCG2P16885 1265 aa23.08■■□□□ 1.29
CKS1B-203ENST00000368439 DYNLL1P63167 89 aaKnown RBP23.08■■□□□ 1.29
CKS1B-203ENST00000368439 MAGEB6Q8N7X4 407 aa23.08■■□□□ 1.29
CKS1B-203ENST00000368439 CRBNQ96SW2 442 aa23.08■■□□□ 1.29
CKS1B-203ENST00000368439 MCOLN1Q9GZU1 580 aa23.08■■□□□ 1.29
CKS1B-203ENST00000368439 CCL15-CCL14A0A0B4J2E2 113 aa23.07■■□□□ 1.28
CKS1B-203ENST00000368439 ATP5JP18859 108 aa23.07■■□□□ 1.28
CKS1B-203ENST00000368439 MAP3K12Q12852 859 aa23.07■■□□□ 1.28
CKS1B-203ENST00000368439 CCL15Q16663 113 aa23.07■■□□□ 1.28
CKS1B-203ENST00000368439 TMED8Q6PL24 325 aaPredicted RBP23.07■■□□□ 1.28
CKS1B-203ENST00000368439 BCL11AQ9H165 835 aa23.07■■□□□ 1.28
CKS1B-203ENST00000368439 DGKZQ13574 1117 aa23.06■■□□□ 1.28
CKS1B-203ENST00000368439 TTF1Q15361 905 aaPredicted RBP23.06■■□□□ 1.28
CKS1B-203ENST00000368439 OTUD7BQ6GQQ9 843 aa23.06■■□□□ 1.28
CKS1B-203ENST00000368439 SCYL3Q8IZE3 742 aa23.06■■□□□ 1.28
CKS1B-203ENST00000368439 TGFBRAP1Q8WUH2 860 aa23.06■■□□□ 1.28
CKS1B-203ENST00000368439 EDC3Q96F86 508 aaKnown RBP23.06■■□□□ 1.28
CKS1B-203ENST00000368439 ABHD8Q96I13 439 aa23.06■■□□□ 1.28
CKS1B-203ENST00000368439 KCNH4Q9UQ05 1017 aa23.06■■□□□ 1.28
CKS1B-203ENST00000368439 MYH1P12882 1939 aa23.06■■□□□ 1.28
CKS1B-203ENST00000368439 FLT1P17948 1338 aa23.06■■□□□ 1.28
CKS1B-203ENST00000368439 ATAD5Q96QE3 1844 aa23.05■■□□□ 1.28
CKS1B-203ENST00000368439 GOLIM4O00461 696 aa23.05■■□□□ 1.28
CKS1B-203ENST00000368439 CRHR2Q13324 411 aa23.05■■□□□ 1.28
CKS1B-203ENST00000368439 MAPKAPK5Q8IW41 473 aa23.05■■□□□ 1.28
CKS1B-203ENST00000368439 FAM43AQ8N2R8 423 aa23.05■■□□□ 1.28
CKS1B-203ENST00000368439 MIGA1Q8NAN2 632 aa23.05■■□□□ 1.28
CKS1B-203ENST00000368439 DNAJC2Q99543 621 aaKnown RBP23.05■■□□□ 1.28
CKS1B-203ENST00000368439 PTPRFP10586 1907 aa23.05■■□□□ 1.28
CKS1B-203ENST00000368439 MYH7P12883 1935 aa23.05■■□□□ 1.28
CKS1B-203ENST00000368439 FAM196BA6NMK8 535 aa23.04■■□□□ 1.28
CKS1B-203ENST00000368439 CETPP11597 493 aa23.04■■□□□ 1.28
CKS1B-203ENST00000368439 SNAPC2Q13487 334 aa23.04■■□□□ 1.28
CKS1B-203ENST00000368439 HAUS7Q99871 368 aa23.04■■□□□ 1.28
CKS1B-203ENST00000368439 BOLA2Q9H3K6 86 aa23.04■■□□□ 1.28
CKS1B-203ENST00000368439 TCRBV5S4A2TA0A5A2 114 aa23.03■■□□□ 1.28
CKS1B-203ENST00000368439 CTNND1O60716 968 aaKnown RBP23.03■■□□□ 1.28
CKS1B-203ENST00000368439 CAPN15O75808 1086 aa23.03■■□□□ 1.28
CKS1B-203ENST00000368439 PDE6AP16499 860 aa23.03■■□□□ 1.28
CKS1B-203ENST00000368439 MOGSQ13724 837 aa23.03■■□□□ 1.28
CKS1B-203ENST00000368439 RIOK1Q9BRS2 568 aaKnown RBP23.03■■□□□ 1.28
CKS1B-203ENST00000368439 PAG1Q9NWQ8 432 aa23.03■■□□□ 1.28
CKS1B-203ENST00000368439 DDX60LQ5H9U9 1706 aaKnown RBP23.02■■□□□ 1.28
CKS1B-203ENST00000368439 BTBD19C9JJ37 291 aa23.02■■□□□ 1.28
CKS1B-203ENST00000368439 FKTNO75072 461 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms