RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PXYLP1Q8TE99 480 aa17.31■□□□□ 0.36
VPS29-201ENST00000360579 USP40Q9NVE5 1235 aa17.31■□□□□ 0.36
VPS29-201ENST00000360579 A0A0G2JLL6 359 aaPredicted RBP17.3■□□□□ 0.36
VPS29-201ENST00000360579 EVI5O60447 810 aa17.3■□□□□ 0.36
VPS29-201ENST00000360579 PRRT2Q7Z6L0 340 aaPredicted RBP17.3■□□□□ 0.36
VPS29-201ENST00000360579 SCYL3Q8IZE3 742 aa17.3■□□□□ 0.36
VPS29-201ENST00000360579 UNC93B1Q9H1C4 597 aa17.3■□□□□ 0.36
VPS29-201ENST00000360579 FAM198AQ9UFP1 575 aa17.3■□□□□ 0.36
VPS29-201ENST00000360579 ZHX2Q9Y6X8 837 aa17.3■□□□□ 0.36
VPS29-201ENST00000360579 SALL1Q9NSC2 1324 aa17.29■□□□□ 0.36
VPS29-201ENST00000360579 LAMA3Q16787 3333 aa17.29■□□□□ 0.36
VPS29-201ENST00000360579 PRDX5P30044 214 aa17.29■□□□□ 0.36
VPS29-201ENST00000360579 FLT3LGP49771 235 aa17.29■□□□□ 0.36
VPS29-201ENST00000360579 IRF5Q13568 498 aa17.29■□□□□ 0.36
VPS29-201ENST00000360579 GABRQQ9UN88 632 aa17.29■□□□□ 0.36
VPS29-201ENST00000360579 PHF20L1A8MW92 1017 aa17.28■□□□□ 0.36
VPS29-201ENST00000360579 TNPO2O14787 897 aaKnown RBP17.28■□□□□ 0.36
VPS29-201ENST00000360579 SEMA3EO15041 775 aa17.28■□□□□ 0.36
VPS29-201ENST00000360579 ENTPD3O75355 529 aa17.28■□□□□ 0.36
VPS29-201ENST00000360579 TFRCP02786 760 aaKnown RBP17.28■□□□□ 0.36
VPS29-201ENST00000360579 INHAP05111 366 aa17.28■□□□□ 0.36
VPS29-201ENST00000360579 PTPRAP18433 802 aa17.28■□□□□ 0.36
VPS29-201ENST00000360579 ZGPATQ8N5A5 531 aaKnown RBP17.28■□□□□ 0.36
VPS29-201ENST00000360579 SMCR8Q8TEV9 937 aaPredicted RBP17.28■□□□□ 0.36
VPS29-201ENST00000360579 IDI2Q9BXS1 227 aa17.28■□□□□ 0.36
VPS29-201ENST00000360579 USP44Q9H0E7 712 aa17.28■□□□□ 0.36
VPS29-201ENST00000360579 FBXO3Q9UK99 471 aa17.28■□□□□ 0.36
VPS29-201ENST00000360579 DENND2AQ9ULE3 1009 aa17.28■□□□□ 0.36
VPS29-201ENST00000360579 AFG3L2Q9Y4W6 797 aa17.28■□□□□ 0.36
VPS29-201ENST00000360579 LRRFIP2Q9Y608 721 aaKnown RBP17.28■□□□□ 0.36
VPS29-201ENST00000360579 ATRNL1Q5VV63 1379 aa17.28■□□□□ 0.36
VPS29-201ENST00000360579 GADL1Q6ZQY3 521 aa17.27■□□□□ 0.36
VPS29-201ENST00000360579 MRPL50Q8N5N7 158 aaKnown RBP17.27■□□□□ 0.36
VPS29-201ENST00000360579 SLC17A8Q8NDX2 589 aa17.27■□□□□ 0.36
VPS29-201ENST00000360579 ELNP15502 786 aa17.26■□□□□ 0.35
VPS29-201ENST00000360579 RFX5P48382 616 aaPredicted RBP17.26■□□□□ 0.35
VPS29-201ENST00000360579 RGS3P49796 1198 aa17.26■□□□□ 0.35
VPS29-201ENST00000360579 ATP2B3Q16720 1220 aa17.26■□□□□ 0.35
VPS29-201ENST00000360579 ZSCAN29Q8IWY8 852 aaPredicted RBP17.26■□□□□ 0.35
VPS29-201ENST00000360579 SLF2Q8IX21 1173 aa17.26■□□□□ 0.35
VPS29-201ENST00000360579 COA7Q96BR5 231 aa17.26■□□□□ 0.35
VPS29-201ENST00000360579 DEFB118Q96PH6 123 aa17.26■□□□□ 0.35
VPS29-201ENST00000360579 PAK6Q9NQU5 681 aaPredicted RBP17.26■□□□□ 0.35
VPS29-201ENST00000360579 CEP126Q9P2H0 1117 aa17.26■□□□□ 0.35
VPS29-201ENST00000360579 ANP32CO43423 234 aa17.25■□□□□ 0.35
VPS29-201ENST00000360579 CTNND1O60716 968 aaKnown RBP17.25■□□□□ 0.35
VPS29-201ENST00000360579 CIAO1O76071 339 aa17.25■□□□□ 0.35
VPS29-201ENST00000360579 MAP3K10Q02779 954 aa17.25■□□□□ 0.35
VPS29-201ENST00000360579 ATG9AQ7Z3C6 839 aa17.25■□□□□ 0.35
VPS29-201ENST00000360579 ZFPM1Q8IX07 1006 aa17.25■□□□□ 0.35
VPS29-201ENST00000360579 PNMA3Q9UL41 463 aa17.25■□□□□ 0.35
VPS29-201ENST00000360579 AK9Q5TCS8 1911 aa17.24■□□□□ 0.35
VPS29-201ENST00000360579 DLL1O00548 723 aa17.24■□□□□ 0.35
VPS29-201ENST00000360579 CRISPLD2Q9H0B8 497 aa17.24■□□□□ 0.35
VPS29-201ENST00000360579 AGTPBP1Q9UPW5 1226 aa17.24■□□□□ 0.35
VPS29-201ENST00000360579 A0A0C4DFX4 3053 aa17.24■□□□□ 0.35
VPS29-201ENST00000360579 GAKO14976 1311 aa17.23■□□□□ 0.35
VPS29-201ENST00000360579 MYH13Q9UKX3 1938 aa17.23■□□□□ 0.35
VPS29-201ENST00000360579 COL6A3P12111 3177 aa17.23■□□□□ 0.35
VPS29-201ENST00000360579 FAM110CQ1W6H9 321 aa17.23■□□□□ 0.35
VPS29-201ENST00000360579 NECAB2Q7Z6G3 386 aa17.23■□□□□ 0.35
VPS29-201ENST00000360579 DZIP1Q86YF9 867 aaKnown RBP17.23■□□□□ 0.35
VPS29-201ENST00000360579 ANKLE1Q8NAG6 615 aa17.23■□□□□ 0.35
VPS29-201ENST00000360579 TAOK2Q9UL54 1235 aa17.23■□□□□ 0.35
VPS29-201ENST00000360579 MGAMO43451 1857 aa17.22■□□□□ 0.35
VPS29-201ENST00000360579 TRIM75PA6NK02 468 aa17.22■□□□□ 0.35
VPS29-201ENST00000360579 PAWRQ96IZ0 340 aaKnown RBP17.22■□□□□ 0.35
VPS29-201ENST00000360579 RFX7Q2KHR2 1363 aa17.22■□□□□ 0.35
VPS29-201ENST00000360579 PDS5AQ29RF7 1337 aaKnown RBP17.21■□□□□ 0.35
VPS29-201ENST00000360579 IL15P40933 162 aaPredicted RBP17.21■□□□□ 0.35
VPS29-201ENST00000360579 PABPC4Q13310 644 aaKnown RBP eCLIP17.21■□□□□ 0.356e-6■■■■■ 28.1
VPS29-201ENST00000360579 SPTY2D1Q68D10 685 aaPredicted RBP17.21■□□□□ 0.35
VPS29-201ENST00000360579 GPR153Q6NV75 609 aa17.21■□□□□ 0.35
VPS29-201ENST00000360579 SH3BP5LQ7L8J4 393 aa17.21■□□□□ 0.35
VPS29-201ENST00000360579 ANKRD13CQ8N6S4 541 aa17.21■□□□□ 0.35
VPS29-201ENST00000360579 PROCA1Q8NCQ7 364 aaPredicted RBP17.21■□□□□ 0.35
VPS29-201ENST00000360579 FAM163AQ96GL9 167 aaPredicted RBP17.21■□□□□ 0.35
VPS29-201ENST00000360579 TBC1D2Q9BYX2 928 aa17.21■□□□□ 0.35
VPS29-201ENST00000360579 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.21■□□□□ 0.35
VPS29-201ENST00000360579 SIL1Q9H173 461 aa17.21■□□□□ 0.35
VPS29-201ENST00000360579 STAP2Q9UGK3 403 aa17.21■□□□□ 0.35
VPS29-201ENST00000360579 HDAC5Q9UQL6 1122 aa17.21■□□□□ 0.35
VPS29-201ENST00000360579 DOCK2Q92608 1830 aa17.21■□□□□ 0.35
VPS29-201ENST00000360579 DDTLA6NHG4 134 aaPredicted RBP17.2■□□□□ 0.34
VPS29-201ENST00000360579 SOX1O00570 391 aaPredicted RBP17.2■□□□□ 0.34
VPS29-201ENST00000360579 TBC1D12O60347 775 aa17.2■□□□□ 0.34
VPS29-201ENST00000360579 UBTFL1P0CB47 393 aaPredicted RBP17.2■□□□□ 0.34
VPS29-201ENST00000360579 BMP8BP34820 402 aa17.2■□□□□ 0.34
VPS29-201ENST00000360579 PHKA1P46020 1223 aa17.2■□□□□ 0.34
VPS29-201ENST00000360579 GCLCP48506 637 aaPredicted RBP17.2■□□□□ 0.34
VPS29-201ENST00000360579 SSH1Q8WYL5 1049 aa17.2■□□□□ 0.34
VPS29-201ENST00000360579 ZNF521Q96K83 1311 aa17.2■□□□□ 0.34
VPS29-201ENST00000360579 HMGCRP04035 888 aa17.19■□□□□ 0.34
VPS29-201ENST00000360579 PICALMQ13492 652 aa17.19■□□□□ 0.34
VPS29-201ENST00000360579 CCDC102BQ68D86 513 aa17.19■□□□□ 0.34
VPS29-201ENST00000360579 FAM9BQ8IZU0 186 aa17.19■□□□□ 0.34
VPS29-201ENST00000360579 LRCH3Q96II8 777 aa17.19■□□□□ 0.34
VPS29-201ENST00000360579 ABCF2Q9UG63 623 aa17.19■□□□□ 0.34
VPS29-201ENST00000360579 MAP4K4O95819 1239 aaPredicted RBP17.18■□□□□ 0.34
VPS29-201ENST00000360579 BTDP43251 543 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms