RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 SPATA32Q96LK8 384 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 SCAND2PQ9GZW5 306 aaPredicted RBP10.05□□□□□ -0.8
TRIM55-204ENST00000353317 CBX8Q9HC52 389 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 CCDC88AQ3V6T2 1871 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 GSG1L2A8MUP6 293 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 RIMBP2O15034 1052 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 PDE6BP35913 854 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 MECOMQ03112 1051 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 CHST3Q7LGC8 479 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 LEO1Q8WVC0 666 aaPredicted RBP10.05□□□□□ -0.8
TRIM55-204ENST00000353317 NSUN4Q96CB9 384 aaKnown RBP10.05□□□□□ -0.8
TRIM55-204ENST00000353317 MASTLQ96GX5 879 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 ALDH8A1Q9H2A2 487 aaPredicted RBP10.05□□□□□ -0.8
TRIM55-204ENST00000353317 CD209Q9NNX6 404 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 PRDM10Q9NQV6 1147 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 RAI14Q9P0K7 980 aa10.05□□□□□ -0.8
TRIM55-204ENST00000353317 GOLGA6L4A6NEF3 574 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 E7EWF7 191 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 NR1I2O75469 434 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 CYP7A1P22680 504 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 RBM43Q6ZSC3 357 aaKnown RBP10.04□□□□□ -0.8
TRIM55-204ENST00000353317 C15orf52Q6ZUT6 534 aaKnown RBP10.04□□□□□ -0.8
TRIM55-204ENST00000353317 CCDC186Q7Z3E2 898 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 GPHNQ9NQX3 736 aaPredicted RBP10.04□□□□□ -0.8
TRIM55-204ENST00000353317 KCNQ5Q9NR82 932 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 GNL3LQ9NVN8 582 aaKnown RBP10.04□□□□□ -0.8
TRIM55-204ENST00000353317 GGA1Q9UJY5 639 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 SCN9AQ15858 1988 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 MYH2Q9UKX2 1941 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 C6orf229H3BNL8 230 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 JAK2O60674 1132 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 ZBTB7AO95365 584 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 LRMPQ12912 555 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 PGBD1Q96JS3 809 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 RIOK1Q9BRS2 568 aaKnown RBP10.04□□□□□ -0.8
TRIM55-204ENST00000353317 NRBP1Q9UHY1 535 aa10.04□□□□□ -0.8
TRIM55-204ENST00000353317 KCNA3P22001 575 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 ATP2B4P23634 1241 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 PPP4R3BQ5MIZ7 849 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 ZSCAN25Q6NSZ9 544 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 SDR42E1Q8WUS8 393 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 C7orf43Q8WVR3 580 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 DDX19AQ9NUU7 478 aaKnown RBP10.03□□□□□ -0.8
TRIM55-204ENST00000353317 PLA2G4DQ86XP0 818 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 TBC1D10CQ8IV04 446 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 AIDAQ96BJ3 306 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 DDX11Q96FC9 970 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 NEK1Q96PY6 1258 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 MXD3Q9BW11 206 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 CLSTN2Q9H4D0 955 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 ATF5Q9Y2D1 282 aaPredicted RBP10.03□□□□□ -0.8
TRIM55-204ENST00000353317 SNED1Q8TER0 1413 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 H0YIN7 160 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 SEMA3EO15041 775 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 CTIFO43310 598 aaKnown RBP10.03□□□□□ -0.8
TRIM55-204ENST00000353317 IL1R1P14778 569 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 EXOSC10Q01780 885 aaKnown RBP10.03□□□□□ -0.8
TRIM55-204ENST00000353317 DIXDC1Q155Q3 683 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 LRRFIP1Q32MZ4 808 aaKnown RBP10.03□□□□□ -0.8
TRIM55-204ENST00000353317 IFNL3Q8IZI9 196 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 GTF3C6Q969F1 213 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 TRIM5Q9C035 493 aa10.03□□□□□ -0.8
TRIM55-204ENST00000353317 CDK5RAP2Q96SN8 1893 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 PATL2C9JE40 543 aaKnown RBP10.02□□□□□ -0.81
TRIM55-204ENST00000353317 APPP05067 770 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 ZSCAN20P17040 1043 aaPredicted RBP10.02□□□□□ -0.81
TRIM55-204ENST00000353317 ALDH1B1P30837 517 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 ZNF165P49910 485 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 ZNF75DP51815 510 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 CBX1P83916 185 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 DOK7Q18PE1 504 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 BICD2Q8TD16 824 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 DNAJC25Q9H1X3 360 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 PDS5AQ29RF7 1337 aaKnown RBP10.02□□□□□ -0.81
TRIM55-204ENST00000353317 CYP2D7A0A087X1C5 515 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 ANTXR2P58335 489 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 CTDSPL2Q05D32 466 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 DRC7Q8IY82 874 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 STK11IPQ8N1F8 1099 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 ANKRD7Q92527 254 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 UPF1Q92900 1129 aaKnown RBP eCLIP10.02□□□□□ -0.81
TRIM55-204ENST00000353317 BRF1Q92994 677 aa10.02□□□□□ -0.81
TRIM55-204ENST00000353317 DLEC1Q9Y238 1755 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 KIAA1551Q9HCM1 1747 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 RESTQ13127 1097 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 R3HDM1Q15032 1099 aaKnown RBP10.01□□□□□ -0.81
TRIM55-204ENST00000353317 NAA16Q6N069 864 aaPredicted RBP10.01□□□□□ -0.81
TRIM55-204ENST00000353317 Q6ZUG5 572 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 ZNF804AQ7Z570 1209 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 PDCL2Q8N4E4 241 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 CERS5Q8N5B7 392 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 C16orf45Q96MC5 204 aaPredicted RBP10.01□□□□□ -0.81
TRIM55-204ENST00000353317 AATFQ9NY61 560 aaKnown RBP eCLIP10.01□□□□□ -0.81
TRIM55-204ENST00000353317 SLC4A4Q9Y6R1 1079 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 ZNF646O15015 1829 aaPredicted RBP10.01□□□□□ -0.81
TRIM55-204ENST00000353317 KIF13BQ9NQT8 1826 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 ADAMTSL1Q8N6G6 1762 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 C10orf71Q711Q0 1435 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 STYK1Q6J9G0 422 aa10.01□□□□□ -0.81
TRIM55-204ENST00000353317 DPP8Q6V1X1 898 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms