RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 LIFRP42702 1097 aa22.47■■□□□ 1.19
COL9A3-201ENST00000343916 LRMPQ12912 555 aa22.47■■□□□ 1.19
COL9A3-201ENST00000343916 GNL2Q13823 731 aaKnown RBP22.47■■□□□ 1.19
COL9A3-201ENST00000343916 SMARCC1Q92922 1105 aaPredicted RBP22.47■■□□□ 1.19
COL9A3-201ENST00000343916 ARID3AQ99856 593 aa22.47■■□□□ 1.19
COL9A3-201ENST00000343916 SLC26A6Q9BXS9 759 aa22.47■■□□□ 1.19
COL9A3-201ENST00000343916 NACAP1Q9BZK3 213 aa22.47■■□□□ 1.19
COL9A3-201ENST00000343916 AXDND1Q5T1B0 1012 aaPredicted RBP22.47■■□□□ 1.19
COL9A3-201ENST00000343916 ANKRD18AQ8IVF6 992 aa22.47■■□□□ 1.19
COL9A3-201ENST00000343916 CNNM2Q9H8M5 875 aa22.47■■□□□ 1.19
COL9A3-201ENST00000343916 SPTLC3Q9NUV7 552 aa22.47■■□□□ 1.19
COL9A3-201ENST00000343916 PNPLA7Q6ZV29 1317 aa22.47■■□□□ 1.19
COL9A3-201ENST00000343916 TPM3P06753 285 aa22.46■■□□□ 1.19
COL9A3-201ENST00000343916 DHX40Q8IX18 779 aaKnown RBP22.46■■□□□ 1.19
COL9A3-201ENST00000343916 CCDC82Q8N4S0 544 aa22.46■■□□□ 1.19
COL9A3-201ENST00000343916 KRT23Q9C075 422 aa22.46■■□□□ 1.19
COL9A3-201ENST00000343916 ANO10Q9NW15 660 aa22.46■■□□□ 1.19
COL9A3-201ENST00000343916 RAI14Q9P0K7 980 aa22.46■■□□□ 1.19
COL9A3-201ENST00000343916 MROH7-TTC4A0A0A0MT08 1334 aa22.46■■□□□ 1.19
COL9A3-201ENST00000343916 BECN2A8MW95 431 aa22.46■■□□□ 1.19
COL9A3-201ENST00000343916 GNAT2P19087 354 aa22.46■■□□□ 1.19
COL9A3-201ENST00000343916 CMTR1Q8N1G2 835 aaKnown RBP22.46■■□□□ 1.19
COL9A3-201ENST00000343916 STAG1Q8WVM7 1258 aa22.46■■□□□ 1.19
COL9A3-201ENST00000343916 CLIP2Q9UDT6 1046 aa22.46■■□□□ 1.19
COL9A3-201ENST00000343916 GUCY1A2P33402 732 aa22.45■■□□□ 1.18
COL9A3-201ENST00000343916 CLEC4GQ6UXB4 293 aa22.45■■□□□ 1.18
COL9A3-201ENST00000343916 ZNF202O95125 648 aa22.45■■□□□ 1.18
COL9A3-201ENST00000343916 MINDY4BA8MYZ0 360 aa22.44■■□□□ 1.18
COL9A3-201ENST00000343916 PFKFB1P16118 471 aa22.44■■□□□ 1.18
COL9A3-201ENST00000343916 GTF2E1P29083 439 aaPredicted RBP22.44■■□□□ 1.18
COL9A3-201ENST00000343916 SLC39A14Q15043 492 aa22.44■■□□□ 1.18
COL9A3-201ENST00000343916 CELF1Q92879 486 aaKnown RBP22.44■■□□□ 1.18
COL9A3-201ENST00000343916 LAMB2P55268 1798 aa22.44■■□□□ 1.18
COL9A3-201ENST00000343916 COL1A1P02452 1464 aaPredicted RBP22.44■■□□□ 1.18
COL9A3-201ENST00000343916 ZNF804BA4D1E1 1349 aa22.44■■□□□ 1.18
COL9A3-201ENST00000343916 CCDC144BQ3MJ40 725 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 TBC1D9BQ66K14 1250 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 AOPEPQ8N6M6 819 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 KIAA1468Q9P260 1216 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 BIN1O00499 593 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 PPARAQ07869 468 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 SSRP1Q08945 709 aaKnown RBP22.43■■□□□ 1.18
COL9A3-201ENST00000343916 WTAPQ15007 396 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 DPCR1Q3MIW9 517 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 CCDC24Q8N4L8 307 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 C8orf37Q96NL8 207 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 MINPP1Q9UNW1 487 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 ECM29Q5VYK3 1845 aa22.43■■□□□ 1.18
COL9A3-201ENST00000343916 TRIM29Q14134 588 aa22.42■■□□□ 1.18
COL9A3-201ENST00000343916 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.42■■□□□ 1.18
COL9A3-201ENST00000343916 CEP57L1Q8IYX8 460 aa22.42■■□□□ 1.18
COL9A3-201ENST00000343916 DYNC1I1O14576 645 aa22.42■■□□□ 1.18
COL9A3-201ENST00000343916 COL5A3P25940 1745 aaPredicted RBP22.42■■□□□ 1.18
COL9A3-201ENST00000343916 SF3B3Q15393 1217 aaKnown RBP22.42■■□□□ 1.18
COL9A3-201ENST00000343916 BSDC1Q9NW68 430 aaPredicted RBP22.42■■□□□ 1.18
COL9A3-201ENST00000343916 BCORQ6W2J9 1755 aa22.42■■□□□ 1.18
COL9A3-201ENST00000343916 TIAM2Q8IVF5 1701 aa22.42■■□□□ 1.18
COL9A3-201ENST00000343916 MAGEB6P1A0A0J9YX57 407 aa22.41■■□□□ 1.18
COL9A3-201ENST00000343916 CMA1P23946 247 aa22.41■■□□□ 1.18
COL9A3-201ENST00000343916 CERKQ8TCT0 537 aa22.41■■□□□ 1.18
COL9A3-201ENST00000343916 FMNL1O95466 1100 aaPredicted RBP22.41■■□□□ 1.18
COL9A3-201ENST00000343916 U2AF2P26368 475 aaKnown RBP eCLIP22.41■■□□□ 1.183e-6■■■■□ 20.9
COL9A3-201ENST00000343916 KLRK1P26718 216 aa22.41■■□□□ 1.18
COL9A3-201ENST00000343916 SART3Q15020 963 aaKnown RBP22.41■■□□□ 1.18
COL9A3-201ENST00000343916 PTPAQ15257 358 aa22.41■■□□□ 1.18
COL9A3-201ENST00000343916 SARM1Q6SZW1 724 aa22.41■■□□□ 1.18
COL9A3-201ENST00000343916 NUP133Q8WUM0 1156 aa22.41■■□□□ 1.18
COL9A3-201ENST00000343916 MAP3K14Q99558 947 aa22.41■■□□□ 1.18
COL9A3-201ENST00000343916 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.41■■□□□ 1.18
COL9A3-201ENST00000343916 BCL2L12Q9HB09 334 aa22.41■■□□□ 1.18
COL9A3-201ENST00000343916 DYNLL1P63167 89 aaKnown RBP22.4■■□□□ 1.18
COL9A3-201ENST00000343916 RTN1Q16799 776 aa22.4■■□□□ 1.18
COL9A3-201ENST00000343916 CLIC6Q96NY7 704 aa22.4■■□□□ 1.18
COL9A3-201ENST00000343916 SRP68Q9UHB9 627 aaKnown RBP22.4■■□□□ 1.18
COL9A3-201ENST00000343916 KCNJ14Q9UNX9 436 aa22.4■■□□□ 1.18
COL9A3-201ENST00000343916 CICQ96RK0 1608 aaPredicted RBP22.4■■□□□ 1.18
COL9A3-201ENST00000343916 CYP2D7A0A087X1C5 515 aa22.4■■□□□ 1.18
COL9A3-201ENST00000343916 ERICH2A1L162 156 aa22.4■■□□□ 1.18
COL9A3-201ENST00000343916 SLC3A2P08195 630 aaKnown RBP22.4■■□□□ 1.18
COL9A3-201ENST00000343916 IFNAR1P17181 557 aa22.4■■□□□ 1.18
COL9A3-201ENST00000343916 UBE4AQ14139 1066 aa22.4■■□□□ 1.18
COL9A3-201ENST00000343916 AEBP2Q6ZN18 517 aaPredicted RBP22.4■■□□□ 1.18
COL9A3-201ENST00000343916 NGLY1Q96IV0 654 aa22.4■■□□□ 1.18
COL9A3-201ENST00000343916 FAM84BQ96KN1 310 aaPredicted RBP22.4■■□□□ 1.18
COL9A3-201ENST00000343916 GNL3LQ9NVN8 582 aaKnown RBP22.4■■□□□ 1.18
COL9A3-201ENST00000343916 BTBD18B2RXH4 712 aa22.39■■□□□ 1.18
COL9A3-201ENST00000343916 CAVIN4Q5BKX8 364 aa22.39■■□□□ 1.18
COL9A3-201ENST00000343916 ISM2Q6H9L7 571 aa22.39■■□□□ 1.18
COL9A3-201ENST00000343916 SHC4Q6S5L8 630 aa22.39■■□□□ 1.18
COL9A3-201ENST00000343916 CACTINQ8WUQ7 758 aaKnown RBP22.39■■□□□ 1.18
COL9A3-201ENST00000343916 MAP7D2Q96T17 732 aa22.39■■□□□ 1.18
COL9A3-201ENST00000343916 RIOK1Q9BRS2 568 aaKnown RBP22.39■■□□□ 1.18
COL9A3-201ENST00000343916 ARID5BQ14865 1188 aa22.39■■□□□ 1.17
COL9A3-201ENST00000343916 ZNF384Q8TF68 577 aa22.39■■□□□ 1.17
COL9A3-201ENST00000343916 ZRSR1Q15695 479 aaKnown RBP22.38■■□□□ 1.17
COL9A3-201ENST00000343916 RGS22Q8NE09 1264 aa22.38■■□□□ 1.17
COL9A3-201ENST00000343916 STK36Q9NRP7 1315 aa22.38■■□□□ 1.17
COL9A3-201ENST00000343916 UBAC1Q9BSL1 405 aa22.38■■□□□ 1.17
COL9A3-201ENST00000343916 NAT10Q9H0A0 1025 aaKnown RBP22.38■■□□□ 1.17
COL9A3-201ENST00000343916 RNF41Q9H4P4 317 aaPredicted RBP22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms