RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 UBAC1Q9BSL1 405 aa15.25■□□□□ 0.03
COL18A1-201ENST00000342220 KCNQ5Q9NR82 932 aa15.25■□□□□ 0.03
COL18A1-201ENST00000342220 CCDC39Q9UFE4 941 aa15.25■□□□□ 0.03
COL18A1-201ENST00000342220 POLR3DP05423 398 aaPredicted RBP15.25■□□□□ 0.03
COL18A1-201ENST00000342220 CACNB3P54284 484 aa15.25■□□□□ 0.03
COL18A1-201ENST00000342220 UBE3CQ15386 1083 aa15.25■□□□□ 0.03
COL18A1-201ENST00000342220 GTPBP4Q9BZE4 634 aaKnown RBP15.25■□□□□ 0.03
COL18A1-201ENST00000342220 EPB41L4AQ9HCS5 686 aaPredicted RBP15.25■□□□□ 0.03
COL18A1-201ENST00000342220 SCAF8Q9UPN6 1271 aaKnown RBP15.25■□□□□ 0.03
COL18A1-201ENST00000342220 ADD1P35611 737 aaKnown RBP15.24■□□□□ 0.03
COL18A1-201ENST00000342220 SLC15A2Q16348 729 aa15.24■□□□□ 0.03
COL18A1-201ENST00000342220 CDC37L1Q7L3B6 337 aa15.24■□□□□ 0.03
COL18A1-201ENST00000342220 ZSCAN29Q8IWY8 852 aaPredicted RBP15.24■□□□□ 0.03
COL18A1-201ENST00000342220 CCDC69A6NI79 296 aa15.24■□□□□ 0.03
COL18A1-201ENST00000342220 USP17L8P0C7I0 530 aa15.24■□□□□ 0.03
COL18A1-201ENST00000342220 SYNE3Q6ZMZ3 975 aa15.24■□□□□ 0.03
COL18A1-201ENST00000342220 ZSCAN31Q96LW9 406 aaPredicted RBP15.24■□□□□ 0.03
COL18A1-201ENST00000342220 NUP98P52948 1817 aa15.24■□□□□ 0.03
COL18A1-201ENST00000342220 LETM1O95202 739 aaPredicted RBP15.24■□□□□ 0.03
COL18A1-201ENST00000342220 PTMAP06454 111 aaKnown RBP15.24■□□□□ 0.03
COL18A1-201ENST00000342220 SCRN1Q12765 414 aa15.24■□□□□ 0.03
COL18A1-201ENST00000342220 TCP10Q12799 353 aa15.24■□□□□ 0.03
COL18A1-201ENST00000342220 PATL2C9JE40 543 aaKnown RBP15.23■□□□□ 0.03
COL18A1-201ENST00000342220 DYNLL2Q96FJ2 89 aa15.23■□□□□ 0.03
COL18A1-201ENST00000342220 GSG1L2A8MUP6 293 aa15.23■□□□□ 0.03
COL18A1-201ENST00000342220 CYB5R4Q7L1T6 521 aa15.23■□□□□ 0.03
COL18A1-201ENST00000342220 CD209Q9NNX6 404 aa15.23■□□□□ 0.03
COL18A1-201ENST00000342220 SH2B1Q9NRF2 756 aaPredicted RBP15.23■□□□□ 0.03
COL18A1-201ENST00000342220 NEDD4P46934 1319 aa15.23■□□□□ 0.03
COL18A1-201ENST00000342220 PNPLA7Q6ZV29 1317 aa15.23■□□□□ 0.03
COL18A1-201ENST00000342220 SLURP2P0DP57 97 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 EIF6P56537 245 aaKnown RBP15.22■□□□□ 0.03
COL18A1-201ENST00000342220 MKNK2Q9HBH9 465 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 PTPDC1A2A3K4 754 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 FOXP2O15409 715 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 NMT2O60551 498 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 TMEM87AQ8NBN3 555 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 SLC44A5Q8NCS7 719 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 TBC1D16Q8TBP0 767 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 AIFM3Q96NN9 605 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 TJP1Q07157 1748 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 F13A1P00488 732 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 R3HDM1Q15032 1099 aaKnown RBP15.22■□□□□ 0.03
COL18A1-201ENST00000342220 TSC1Q92574 1164 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 TM6SF1Q9BZW5 370 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 STX8Q9UNK0 236 aa15.22■□□□□ 0.03
COL18A1-201ENST00000342220 UBE2Q2LH0YL09 131 aa15.21■□□□□ 0.03
COL18A1-201ENST00000342220 ZSWIM5Q9P217 1185 aa15.21■□□□□ 0.03
COL18A1-201ENST00000342220 TSPY2A6NKD2 308 aa15.21■□□□□ 0.03
COL18A1-201ENST00000342220 CCDC183Q5T5S1 534 aa15.21■□□□□ 0.03
COL18A1-201ENST00000342220 ZFP91Q96JP5 570 aaPredicted RBP15.21■□□□□ 0.03
COL18A1-201ENST00000342220 CRNKL1Q9BZJ0 848 aaKnown RBP15.21■□□□□ 0.03
COL18A1-201ENST00000342220 SLC12A7Q9Y666 1083 aa15.21■□□□□ 0.03
COL18A1-201ENST00000342220 PLSCR1O15162 318 aa15.21■□□□□ 0.02
COL18A1-201ENST00000342220 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.21■□□□□ 0.02
COL18A1-201ENST00000342220 ORC3Q9UBD5 711 aaPredicted RBP15.21■□□□□ 0.02
COL18A1-201ENST00000342220 TTF2Q9UNY4 1162 aaKnown RBP15.21■□□□□ 0.02
COL18A1-201ENST00000342220 BTAF1O14981 1849 aa15.2■□□□□ 0.02
COL18A1-201ENST00000342220 GOLGA8AA7E2F4 631 aa15.2■□□□□ 0.02
COL18A1-201ENST00000342220 HMGB1P09429 215 aaKnown RBP15.2■□□□□ 0.02
COL18A1-201ENST00000342220 METAP2P50579 478 aaKnown RBP eCLIP15.2■□□□□ 0.027e-7■□□□□ 10.6
COL18A1-201ENST00000342220 PPARAQ07869 468 aa15.2■□□□□ 0.02
COL18A1-201ENST00000342220 ST3GAL1Q11201 340 aa15.2■□□□□ 0.02
COL18A1-201ENST00000342220 FBXO33Q7Z6M2 555 aa15.2■□□□□ 0.02
COL18A1-201ENST00000342220 SH3RF3Q8TEJ3 882 aaPredicted RBP15.2■□□□□ 0.02
COL18A1-201ENST00000342220 DHX16O60231 1041 aaKnown RBP15.2■□□□□ 0.02
COL18A1-201ENST00000342220 BBOX1O75936 387 aa15.2■□□□□ 0.02
COL18A1-201ENST00000342220 PDE6BP35913 854 aa15.2■□□□□ 0.02
COL18A1-201ENST00000342220 RBM26Q5T8P6 1007 aaKnown RBP15.2■□□□□ 0.02
COL18A1-201ENST00000342220 SASS6Q6UVJ0 657 aa15.2■□□□□ 0.02
COL18A1-201ENST00000342220 BRIP1Q9BX63 1249 aa15.2■□□□□ 0.02
COL18A1-201ENST00000342220 FTOQ9C0B1 505 aaKnown RBP eCLIP15.2■□□□□ 0.021e-6■■■■■ 39.4
COL18A1-201ENST00000342220 USP25Q9UHP3 1055 aa15.2■□□□□ 0.02
COL18A1-201ENST00000342220 SART3Q15020 963 aaKnown RBP15.19■□□□□ 0.02
COL18A1-201ENST00000342220 NSUN4Q96CB9 384 aaKnown RBP15.19■□□□□ 0.02
COL18A1-201ENST00000342220 SLC26A6Q9BXS9 759 aa15.19■□□□□ 0.02
COL18A1-201ENST00000342220 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.19■□□□□ 0.02
COL18A1-201ENST00000342220 TCRBV5S4A2TA0A5A2 114 aa15.19■□□□□ 0.02
COL18A1-201ENST00000342220 UBE2HP62256 183 aa15.19■□□□□ 0.02
COL18A1-201ENST00000342220 AOC3Q16853 763 aa15.19■□□□□ 0.02
COL18A1-201ENST00000342220 TEX11Q8IYF3 940 aa15.19■□□□□ 0.02
COL18A1-201ENST00000342220 RAD17O75943 681 aa15.19■□□□□ 0.02
COL18A1-201ENST00000342220 SRGNP10124 158 aa15.19■□□□□ 0.02
COL18A1-201ENST00000342220 PDIA3P30101 505 aaKnown RBP15.19■□□□□ 0.02
COL18A1-201ENST00000342220 AKNAD1Q5T1N1 836 aa15.19■□□□□ 0.02
COL18A1-201ENST00000342220 LEMD3Q9Y2U8 911 aa15.19■□□□□ 0.02
COL18A1-201ENST00000342220 SPDYE4A6NLX3 237 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 FAM196BA6NMK8 535 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 BTDP43251 543 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 WTAPQ15007 396 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 BAZ2BQ9UIF8 2168 aaKnown RBP15.18■□□□□ 0.02
COL18A1-201ENST00000342220 MPHOSPH10O00566 681 aaKnown RBP15.18■□□□□ 0.02
COL18A1-201ENST00000342220 CAMK4Q16566 473 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 FBXO41Q8TF61 875 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 GTF3C6Q969F1 213 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 AKT1S1Q96B36 256 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 MTMR6Q9Y217 621 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 ATP2B4P23634 1241 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 AMOTL1Q8IY63 956 aa15.18■□□□□ 0.02
COL18A1-201ENST00000342220 WDR66Q8TBY9 1149 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms