RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 NAP1L2Q9ULW6 460 aaPredicted RBP20.48■□□□□ 0.87
CLDN4-201ENST00000340958 USP17L12C9JPN9 530 aa20.47■□□□□ 0.87
CLDN4-201ENST00000340958 USP17L21D6R901 530 aa20.47■□□□□ 0.87
CLDN4-201ENST00000340958 PRC1O43663 620 aa20.47■□□□□ 0.87
CLDN4-201ENST00000340958 RBM5P52756 815 aaKnown RBP eCLIP20.47■□□□□ 0.87
CLDN4-201ENST00000340958 FKBP1AP62942 108 aaKnown RBP20.47■□□□□ 0.87
CLDN4-201ENST00000340958 EXOSC10Q01780 885 aaKnown RBP20.47■□□□□ 0.87
CLDN4-201ENST00000340958 TOB2Q14106 344 aaPredicted RBP20.47■□□□□ 0.87
CLDN4-201ENST00000340958 DACT2Q5SW24 774 aa20.47■□□□□ 0.87
CLDN4-201ENST00000340958 TGFBRAP1Q8WUH2 860 aa20.47■□□□□ 0.87
CLDN4-201ENST00000340958 BRF1Q92994 677 aa20.47■□□□□ 0.87
CLDN4-201ENST00000340958 CWC22Q9HCG8 908 aaKnown RBP20.47■□□□□ 0.87
CLDN4-201ENST00000340958 CHMP5Q9NZZ3 219 aa20.47■□□□□ 0.87
CLDN4-201ENST00000340958 ARPP21Q9UBL0 812 aaPredicted RBP20.47■□□□□ 0.87
CLDN4-201ENST00000340958 CTR9Q6PD62 1173 aa20.46■□□□□ 0.87
CLDN4-201ENST00000340958 TPCN1Q9ULQ1 816 aa20.46■□□□□ 0.87
CLDN4-201ENST00000340958 DAGLAQ9Y4D2 1042 aa20.46■□□□□ 0.87
CLDN4-201ENST00000340958 GAKO14976 1311 aa20.46■□□□□ 0.87
CLDN4-201ENST00000340958 B4E1Z4 1266 aa20.46■□□□□ 0.87
CLDN4-201ENST00000340958 CUL4AQ13619 759 aa20.46■□□□□ 0.87
CLDN4-201ENST00000340958 STAG1Q8WVM7 1258 aa20.46■□□□□ 0.87
CLDN4-201ENST00000340958 JDP2Q8WYK2 163 aa20.46■□□□□ 0.87
CLDN4-201ENST00000340958 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.46■□□□□ 0.87
CLDN4-201ENST00000340958 MYH2Q9UKX2 1941 aa20.45■□□□□ 0.86
CLDN4-201ENST00000340958 NEDD4P46934 1319 aa20.45■□□□□ 0.86
CLDN4-201ENST00000340958 STK3Q13188 491 aa20.45■□□□□ 0.86
CLDN4-201ENST00000340958 MAPKAPK5Q8IW41 473 aa20.45■□□□□ 0.86
CLDN4-201ENST00000340958 CCDC83Q8IWF9 413 aa20.45■□□□□ 0.86
CLDN4-201ENST00000340958 MB21D2Q8IYB1 491 aaPredicted RBP20.45■□□□□ 0.86
CLDN4-201ENST00000340958 INTS4Q96HW7 963 aaKnown RBP20.45■□□□□ 0.86
CLDN4-201ENST00000340958 INCENPQ9NQS7 918 aa20.45■□□□□ 0.86
CLDN4-201ENST00000340958 CYP2D7A0A087X1C5 515 aa20.44■□□□□ 0.86
CLDN4-201ENST00000340958 GLTPD2A6NH11 291 aa20.44■□□□□ 0.86
CLDN4-201ENST00000340958 YDJCA8MPS7 323 aa20.44■□□□□ 0.86
CLDN4-201ENST00000340958 RAD17O75943 681 aa20.44■□□□□ 0.86
CLDN4-201ENST00000340958 ME3Q16798 604 aa20.44■□□□□ 0.86
CLDN4-201ENST00000340958 SLC4A8Q2Y0W8 1093 aa20.44■□□□□ 0.86
CLDN4-201ENST00000340958 ZNF541Q9H0D2 1346 aa20.44■□□□□ 0.86
CLDN4-201ENST00000340958 KDM4AO75164 1064 aa20.43■□□□□ 0.86
CLDN4-201ENST00000340958 POLR3DP05423 398 aaPredicted RBP20.43■□□□□ 0.86
CLDN4-201ENST00000340958 CRKP46108 304 aa20.43■□□□□ 0.86
CLDN4-201ENST00000340958 HHIPL2Q6UWX4 724 aa20.43■□□□□ 0.86
CLDN4-201ENST00000340958 NMRK2Q9NPI5 230 aa20.43■□□□□ 0.86
CLDN4-201ENST00000340958 ANAPC4Q9UJX5 808 aa20.43■□□□□ 0.86
CLDN4-201ENST00000340958 ZNRF3Q9ULT6 936 aa20.43■□□□□ 0.86
CLDN4-201ENST00000340958 FZD9O00144 591 aa20.43■□□□□ 0.86
CLDN4-201ENST00000340958 LARGE1O95461 756 aa20.43■□□□□ 0.86
CLDN4-201ENST00000340958 NECAB1Q8N987 351 aa20.43■□□□□ 0.86
CLDN4-201ENST00000340958 USP40Q9NVE5 1235 aa20.43■□□□□ 0.86
CLDN4-201ENST00000340958 CIZ1Q9ULV3 898 aaPredicted RBP20.43■□□□□ 0.86
CLDN4-201ENST00000340958 WDR19Q8NEZ3 1342 aa20.42■□□□□ 0.86
CLDN4-201ENST00000340958 USP17L8P0C7I0 530 aa20.42■□□□□ 0.86
CLDN4-201ENST00000340958 APOBRQ0VD83 1088 aa20.42■□□□□ 0.86
CLDN4-201ENST00000340958 ESR2Q92731 530 aa20.42■□□□□ 0.86
CLDN4-201ENST00000340958 SAP30BPQ9UHR5 308 aaKnown RBP20.42■□□□□ 0.86
CLDN4-201ENST00000340958 WDR90Q96KV7 1748 aa20.42■□□□□ 0.86
CLDN4-201ENST00000340958 MYO3BQ8WXR4 1341 aa20.42■□□□□ 0.86
CLDN4-201ENST00000340958 LAMA4Q16363 1823 aa20.42■□□□□ 0.86
CLDN4-201ENST00000340958 ERICH2A1L162 156 aa20.41■□□□□ 0.86
CLDN4-201ENST00000340958 PDE4BQ07343 736 aa20.41■□□□□ 0.86
CLDN4-201ENST00000340958 PICALMQ13492 652 aa20.41■□□□□ 0.86
CLDN4-201ENST00000340958 SART3Q15020 963 aaKnown RBP20.41■□□□□ 0.86
CLDN4-201ENST00000340958 SBK1Q52WX2 424 aa20.41■□□□□ 0.86
CLDN4-201ENST00000340958 DPY19L2Q6NUT2 758 aa20.41■□□□□ 0.86
CLDN4-201ENST00000340958 SMC3Q9UQE7 1217 aa20.41■□□□□ 0.86
CLDN4-201ENST00000340958 DDNO94850 711 aaPredicted RBP20.41■□□□□ 0.86
CLDN4-201ENST00000340958 CYP2D6P10635 497 aa20.41■□□□□ 0.86
CLDN4-201ENST00000340958 PCP11498 1178 aaKnown RBP20.41■□□□□ 0.86
CLDN4-201ENST00000340958 RSBN1LQ6PCB5 846 aaPredicted RBP20.41■□□□□ 0.86
CLDN4-201ENST00000340958 CYB5R4Q7L1T6 521 aa20.41■□□□□ 0.86
CLDN4-201ENST00000340958 PSMD14O00487 310 aa20.4■□□□□ 0.86
CLDN4-201ENST00000340958 RANBP6O60518 1105 aaKnown RBP20.4■□□□□ 0.86
CLDN4-201ENST00000340958 ANTXR2P58335 489 aa20.4■□□□□ 0.86
CLDN4-201ENST00000340958 RHBDL3P58872 404 aa20.4■□□□□ 0.86
CLDN4-201ENST00000340958 NFXL1Q6ZNB6 911 aa20.4■□□□□ 0.86
CLDN4-201ENST00000340958 TMEM87BQ96K49 555 aa20.4■□□□□ 0.86
CLDN4-201ENST00000340958 MRIQ9BWK5 157 aa20.4■□□□□ 0.86
CLDN4-201ENST00000340958 ZSWIM5Q9P217 1185 aa20.4■□□□□ 0.86
CLDN4-201ENST00000340958 IFIT3O14879 490 aaKnown RBP20.39■□□□□ 0.86
CLDN4-201ENST00000340958 PRDM1O75626 825 aa20.39■□□□□ 0.86
CLDN4-201ENST00000340958 HDLBPQ00341 1268 aaKnown RBP20.39■□□□□ 0.86
CLDN4-201ENST00000340958 TMEM67Q5HYA8 995 aa20.39■□□□□ 0.86
CLDN4-201ENST00000340958 OGFOD1Q8N543 542 aa20.39■□□□□ 0.86
CLDN4-201ENST00000340958 ZDHHC15Q96MV8 337 aa20.39■□□□□ 0.86
CLDN4-201ENST00000340958 UBAC1Q9BSL1 405 aa20.39■□□□□ 0.86
CLDN4-201ENST00000340958 SERPINA10Q9UK55 444 aa20.39■□□□□ 0.86
CLDN4-201ENST00000340958 HDAC9Q9UKV0 1011 aa20.39■□□□□ 0.86
CLDN4-201ENST00000340958 ANGEL1Q9UNK9 670 aaKnown RBP20.39■□□□□ 0.86
CLDN4-201ENST00000340958 FLT1P17948 1338 aa20.39■□□□□ 0.85
CLDN4-201ENST00000340958 BAZ2AQ9UIF9 1905 aaKnown RBP20.39■□□□□ 0.85
CLDN4-201ENST00000340958 KIF3CO14782 793 aa20.39■□□□□ 0.85
CLDN4-201ENST00000340958 DDIT3P35638 169 aa20.39■□□□□ 0.85
CLDN4-201ENST00000340958 RRAGCQ9HB90 399 aa20.39■□□□□ 0.85
CLDN4-201ENST00000340958 SCN9AQ15858 1988 aa20.38■□□□□ 0.85
CLDN4-201ENST00000340958 KLF18A0A0U1RQI7 1052 aa20.38■□□□□ 0.85
CLDN4-201ENST00000340958 NUCB2P80303 420 aa20.38■□□□□ 0.85
CLDN4-201ENST00000340958 C12orf60Q5U649 245 aa20.38■□□□□ 0.85
CLDN4-201ENST00000340958 FBXL16Q8N461 479 aa20.38■□□□□ 0.85
CLDN4-201ENST00000340958 CHMP4CQ96CF2 233 aa20.38■□□□□ 0.85
CLDN4-201ENST00000340958 AGXT2Q9BYV1 514 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms