RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 DLG5Q8TDM6 1919 aa13.65□□□□□ -0.22
USP1-201ENST00000339950 PIK3AP1Q6ZUJ8 805 aa13.65□□□□□ -0.22
USP1-201ENST00000339950 CTCFLQ8NI51 663 aaPredicted RBP13.65□□□□□ -0.22
USP1-201ENST00000339950 ZNF274Q96GC6 653 aaPredicted RBP13.65□□□□□ -0.22
USP1-201ENST00000339950 CAPZA3Q96KX2 299 aa13.65□□□□□ -0.22
USP1-201ENST00000339950 GPR101Q96P66 508 aaPredicted RBP13.65□□□□□ -0.22
USP1-201ENST00000339950 PSMB7Q99436 277 aa13.65□□□□□ -0.22
USP1-201ENST00000339950 PCDHB6Q9Y5E3 794 aa13.65□□□□□ -0.22
USP1-201ENST00000339950 ELP1O95163 1332 aa13.65□□□□□ -0.22
USP1-201ENST00000339950 IQCA1Q86XH1 822 aa13.65□□□□□ -0.22
USP1-201ENST00000339950 KRI1Q8N9T8 703 aaKnown RBP13.65□□□□□ -0.22
USP1-201ENST00000339950 NEDD4P46934 1319 aa13.65□□□□□ -0.23
USP1-201ENST00000339950 CBFA2T2O43439 604 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 NMT2O60551 498 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 CTSWP56202 376 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 CATIPQ7Z7H3 387 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 TTLL11Q8NHH1 800 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 EPSTI1Q96J88 318 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 IDEP14735 1019 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 ANKRD20A12PQ8NF67 263 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 GNL3LQ9NVN8 582 aaKnown RBP13.64□□□□□ -0.23
USP1-201ENST00000339950 EIF5P55010 431 aaKnown RBP13.64□□□□□ -0.23
USP1-201ENST00000339950 RASGRF1Q13972 1273 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 IQCB1Q15051 598 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 DZIP1Q86YF9 867 aaKnown RBP13.64□□□□□ -0.23
USP1-201ENST00000339950 TANGO6Q9C0B7 1094 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 SPTLC3Q9NUV7 552 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 SLAIN2Q9P270 581 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 USP17L12C9JPN9 530 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 USP17L21D6R901 530 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 GOLGA8HP0CJ92 632 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 EVCP57679 992 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 ANTXR2P58335 489 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 NLRP12P59046 1061 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 CAVIN4Q5BKX8 364 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 LRRN4CLQ8ND94 238 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 MCM9Q9NXL9 1143 aa13.64□□□□□ -0.23
USP1-201ENST00000339950 MED23Q9ULK4 1368 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 PATL2C9JE40 543 aaKnown RBP13.63□□□□□ -0.23
USP1-201ENST00000339950 PDE8BO95263 885 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 MRPS25P82663 173 aaKnown RBP13.63□□□□□ -0.23
USP1-201ENST00000339950 TTF1Q15361 905 aaPredicted RBP13.63□□□□□ -0.23
USP1-201ENST00000339950 DHX40Q8IX18 779 aaKnown RBP13.63□□□□□ -0.23
USP1-201ENST00000339950 NKX2-3Q8TAU0 364 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 GPKOWQ92917 476 aaPredicted RBP eCLIP13.63□□□□□ -0.23
USP1-201ENST00000339950 TRIM75PA6NK02 468 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 HEATR3Q7Z4Q2 680 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 NLRP10Q86W26 655 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 MAGEB6P1A0A0J9YX57 407 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 IPO7O95373 1038 aaKnown RBP13.63□□□□□ -0.23
USP1-201ENST00000339950 PRR29P0C7W0 189 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 ZNF569Q5MCW4 686 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 FBXO38Q6PIJ6 1188 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 ZBTB38Q8NAP3 1195 aaPredicted RBP13.63□□□□□ -0.23
USP1-201ENST00000339950 BAG1Q99933 345 aaPredicted RBP13.63□□□□□ -0.23
USP1-201ENST00000339950 ZCCHC17Q9NP64 241 aaKnown RBP13.63□□□□□ -0.23
USP1-201ENST00000339950 TAB2Q9NYJ8 693 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 GUCA1BQ9UMX6 200 aa13.63□□□□□ -0.23
USP1-201ENST00000339950 IKQ13123 557 aaPredicted RBP13.62□□□□□ -0.23
USP1-201ENST00000339950 BRAPQ7Z569 592 aa13.62□□□□□ -0.23
USP1-201ENST00000339950 FMR1NBQ8N0W7 255 aaPredicted RBP13.62□□□□□ -0.23
USP1-201ENST00000339950 RTEL1Q9NZ71 1219 aa13.62□□□□□ -0.23
USP1-201ENST00000339950 HEG1Q9ULI3 1381 aa13.62□□□□□ -0.23
USP1-201ENST00000339950 PLA2G4DQ86XP0 818 aa13.62□□□□□ -0.23
USP1-201ENST00000339950 NOL10Q9BSC4 688 aaKnown RBP13.62□□□□□ -0.23
USP1-201ENST00000339950 CTNND2Q9UQB3 1225 aa13.62□□□□□ -0.23
USP1-201ENST00000339950 MTF1Q14872 753 aa13.62□□□□□ -0.23
USP1-201ENST00000339950 KRT222Q8N1A0 295 aa13.62□□□□□ -0.23
USP1-201ENST00000339950 PPP1R13BQ96KQ4 1090 aa13.62□□□□□ -0.23
USP1-201ENST00000339950 SH3TC1Q8TE82 1336 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 EXOSC10Q01780 885 aaKnown RBP13.61□□□□□ -0.23
USP1-201ENST00000339950 PTPROQ16827 1216 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 PUM3Q15397 648 aaKnown RBP13.61□□□□□ -0.23
USP1-201ENST00000339950 CCDC178Q5BJE1 867 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 AKNAD1Q5T1N1 836 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 ARMCX5Q6P1M9 558 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 ZNF654Q8IZM8 581 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 CCDC150Q8NCX0 1101 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 ZBTB22O15209 634 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 RAD51AP2Q09MP3 1159 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 POSTNQ15063 836 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 ESR2Q92731 530 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 CSRNP2Q9H175 543 aa13.61□□□□□ -0.23
USP1-201ENST00000339950 NEMFO60524 1076 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 PDE8AO60658 829 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 UQCRFS1P1P0C7P4 283 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 ADD2P35612 726 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 LMAN1P49257 510 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 SMARCC2Q8TAQ2 1214 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 TNKSO95271 1327 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 USP42Q9H9J4 1324 aaKnown RBP13.6□□□□□ -0.23
USP1-201ENST00000339950 DIP2AQ14689 1571 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 ARID5AQ03989 594 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 PICALMQ13492 652 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 CCDC152Q4G0S7 254 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 SUSD4Q5VX71 490 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 SHC4Q6S5L8 630 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 ILDR1Q86SU0 546 aaPredicted RBP13.6□□□□□ -0.23
USP1-201ENST00000339950 ANKRD18AQ8IVF6 992 aa13.6□□□□□ -0.23
USP1-201ENST00000339950 IGSF22Q8N9C0 903 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms