RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ORC4O43929 436 aa17.65■□□□□ 0.42
CCDC88C-202ENST00000334448 TEX11Q8IYF3 940 aa17.65■□□□□ 0.42
CCDC88C-202ENST00000334448 TAOK2Q9UL54 1235 aa17.65■□□□□ 0.42
CCDC88C-202ENST00000334448 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.65■□□□□ 0.42
CCDC88C-202ENST00000334448 LAMB1P07942 1786 aa17.64■□□□□ 0.41
CCDC88C-202ENST00000334448 USP17L12C9JPN9 530 aa17.64■□□□□ 0.41
CCDC88C-202ENST00000334448 USP17L21D6R901 530 aa17.64■□□□□ 0.41
CCDC88C-202ENST00000334448 PSMD14O00487 310 aa17.64■□□□□ 0.41
CCDC88C-202ENST00000334448 ANTXR2P58335 489 aa17.64■□□□□ 0.41
CCDC88C-202ENST00000334448 C12orf60Q5U649 245 aa17.64■□□□□ 0.41
CCDC88C-202ENST00000334448 JDP2Q8WYK2 163 aa17.64■□□□□ 0.41
CCDC88C-202ENST00000334448 CIZ1Q9ULV3 898 aaPredicted RBP17.64■□□□□ 0.41
CCDC88C-202ENST00000334448 TACC3Q9Y6A5 838 aa17.64■□□□□ 0.41
CCDC88C-202ENST00000334448 FLT1P17948 1338 aa17.64■□□□□ 0.41
CCDC88C-202ENST00000334448 NEDD4P46934 1319 aa17.64■□□□□ 0.41
CCDC88C-202ENST00000334448 WDHD1O75717 1129 aaPredicted RBP17.63■□□□□ 0.41
CCDC88C-202ENST00000334448 USP5P45974 858 aa17.63■□□□□ 0.41
CCDC88C-202ENST00000334448 CXCL9Q07325 125 aa17.63■□□□□ 0.41
CCDC88C-202ENST00000334448 MFSD6Q6ZSS7 791 aa17.63■□□□□ 0.41
CCDC88C-202ENST00000334448 KIAA0825Q8IV33 1275 aa17.63■□□□□ 0.41
CCDC88C-202ENST00000334448 MTMR14Q8NCE2 650 aa17.63■□□□□ 0.41
CCDC88C-202ENST00000334448 TMEM87BQ96K49 555 aa17.63■□□□□ 0.41
CCDC88C-202ENST00000334448 SYT17Q9BSW7 474 aa17.63■□□□□ 0.41
CCDC88C-202ENST00000334448 COL2A1P02458 1487 aaPredicted RBP17.63■□□□□ 0.41
CCDC88C-202ENST00000334448 F8W031 263 aaPredicted RBP17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 FZD9O00144 591 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 PRC1O43663 620 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 SLC3A2P08195 630 aaKnown RBP17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 RPS12P25398 132 aaKnown RBP17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 CTDSPL2Q05D32 466 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 CIAPIN1Q6FI81 312 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 CDC42EP5Q6NZY7 148 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 Q6ZUG5 572 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 TGFBRAP1Q8WUH2 860 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 IDI2Q9BXS1 227 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 CWC22Q9HCG8 908 aaKnown RBP17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 MCM9Q9NXL9 1143 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 TPCN1Q9ULQ1 816 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 FOCADQ5VW36 1801 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 NAV1Q8NEY1 1877 aa17.62■□□□□ 0.41
CCDC88C-202ENST00000334448 RAD17O75943 681 aa17.61■□□□□ 0.41
CCDC88C-202ENST00000334448 SCNN1DP51172 638 aa17.61■□□□□ 0.41
CCDC88C-202ENST00000334448 PRELPP51888 382 aa17.61■□□□□ 0.41
CCDC88C-202ENST00000334448 TNIP1Q15025 636 aa17.61■□□□□ 0.41
CCDC88C-202ENST00000334448 AMOTL1Q8IY63 956 aa17.61■□□□□ 0.41
CCDC88C-202ENST00000334448 MINDY4BA8MYZ0 360 aa17.6■□□□□ 0.41
CCDC88C-202ENST00000334448 SH2B2O14492 632 aaPredicted RBP17.6■□□□□ 0.41
CCDC88C-202ENST00000334448 LIFRP42702 1097 aa17.6■□□□□ 0.41
CCDC88C-202ENST00000334448 RASSF7Q02833 373 aa17.6■□□□□ 0.41
CCDC88C-202ENST00000334448 ME3Q16798 604 aa17.6■□□□□ 0.41
CCDC88C-202ENST00000334448 SGMS1Q86VZ5 419 aa17.6■□□□□ 0.41
CCDC88C-202ENST00000334448 ESR2Q92731 530 aa17.6■□□□□ 0.41
CCDC88C-202ENST00000334448 ZNF274Q96GC6 653 aaPredicted RBP17.6■□□□□ 0.41
CCDC88C-202ENST00000334448 TCEANC2Q96MN5 208 aa17.6■□□□□ 0.41
CCDC88C-202ENST00000334448 USP40Q9NVE5 1235 aa17.6■□□□□ 0.41
CCDC88C-202ENST00000334448 HDAC9Q9UKV0 1011 aa17.6■□□□□ 0.41
CCDC88C-202ENST00000334448 CDK5RAP2Q96SN8 1893 aa17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 CYP2D7A0A087X1C5 515 aa17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 B4E1Z4 1266 aa17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 LARGE1O95461 756 aa17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 HSP90AA1P07900 732 aaKnown RBP17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 USP17L8P0C7I0 530 aa17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 ST3GAL1Q11201 340 aa17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 CYB5R4Q7L1T6 521 aa17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 MAPKAPK5Q8IW41 473 aa17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 BRF1Q92994 677 aa17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 CHMP4CQ96CF2 233 aa17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 ZBED3Q96IU2 234 aaPredicted RBP17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 ANGEL1Q9UNK9 670 aaKnown RBP17.59■□□□□ 0.41
CCDC88C-202ENST00000334448 ADAMTSL1Q8N6G6 1762 aa17.58■□□□□ 0.41
CCDC88C-202ENST00000334448 NID2Q14112 1375 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 SPDYE2BA6NHP3 402 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 PFKFB2O60825 505 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 KDM4AO75164 1064 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 SPDYE6P0CI01 402 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 CYP2D6P10635 497 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 LMNB1P20700 586 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 RCAN1P53805 252 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 ZNF280AP59817 542 aaPredicted RBP17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 PDE4BQ07343 736 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 CFAP100Q494V2 611 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 FKBP1CQ5VVH2 108 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 NKX2-3Q8TAU0 364 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 IGDCC4Q8TDY8 1250 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 DPF2Q92785 391 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 GTF3C6Q969F1 213 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 OSBPL5Q9H0X9 879 aaPredicted RBP17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 CHMP5Q9NZZ3 219 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 ZSWIM5Q9P217 1185 aa17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.58■□□□□ 0.4
CCDC88C-202ENST00000334448 ATRNL1Q5VV63 1379 aa17.57■□□□□ 0.4
CCDC88C-202ENST00000334448 BAZ2AQ9UIF9 1905 aaKnown RBP17.57■□□□□ 0.4
CCDC88C-202ENST00000334448 GABPAQ06546 454 aa17.57■□□□□ 0.4
CCDC88C-202ENST00000334448 C16orf86Q6ZW13 317 aa17.57■□□□□ 0.4
CCDC88C-202ENST00000334448 TTC6Q86TZ1 520 aa17.57■□□□□ 0.4
CCDC88C-202ENST00000334448 OGFOD1Q8N543 542 aa17.57■□□□□ 0.4
CCDC88C-202ENST00000334448 LRRC2Q9BYS8 371 aa17.57■□□□□ 0.4
CCDC88C-202ENST00000334448 EHD4Q9H223 541 aa17.57■□□□□ 0.4
CCDC88C-202ENST00000334448 ZNF287Q9HBT7 754 aa17.57■□□□□ 0.4
CCDC88C-202ENST00000334448 DDX4Q9NQI0 724 aaKnown RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms