RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CEP350Q5VT06 3117 aa19.2■□□□□ 0.66
CCDC28A-201ENST00000332797 UBE2Q2LH0YL09 131 aa19.19■□□□□ 0.66
CCDC28A-201ENST00000332797 PPP1R12BO60237 982 aaPredicted RBP19.19■□□□□ 0.66
CCDC28A-201ENST00000332797 DEFB115Q30KQ5 88 aa19.19■□□□□ 0.66
CCDC28A-201ENST00000332797 MAPKAPK5Q8IW41 473 aa19.19■□□□□ 0.66
CCDC28A-201ENST00000332797 AK9Q5TCS8 1911 aa19.19■□□□□ 0.66
CCDC28A-201ENST00000332797 TRIM6-TRIM34B2RNG4 842 aa19.18■□□□□ 0.66
CCDC28A-201ENST00000332797 RNF113AO15541 343 aaKnown RBP19.18■□□□□ 0.66
CCDC28A-201ENST00000332797 NPM3O75607 178 aaKnown RBP19.18■□□□□ 0.66
CCDC28A-201ENST00000332797 LRRFIP1Q32MZ4 808 aaKnown RBP19.18■□□□□ 0.66
CCDC28A-201ENST00000332797 LCORLQ8N3X6 602 aa19.18■□□□□ 0.66
CCDC28A-201ENST00000332797 EVI5LQ96CN4 794 aa19.18■□□□□ 0.66
CCDC28A-201ENST00000332797 HOOK2Q96ED9 719 aa19.18■□□□□ 0.66
CCDC28A-201ENST00000332797 OSBPL5Q9H0X9 879 aaPredicted RBP19.18■□□□□ 0.66
CCDC28A-201ENST00000332797 FOCADQ5VW36 1801 aa19.18■□□□□ 0.66
CCDC28A-201ENST00000332797 FLT1P17948 1338 aa19.17■□□□□ 0.66
CCDC28A-201ENST00000332797 MBD4O95243 580 aa19.17■□□□□ 0.66
CCDC28A-201ENST00000332797 ZFYP08048 801 aaPredicted RBP19.17■□□□□ 0.66
CCDC28A-201ENST00000332797 USP5P45974 858 aa19.17■□□□□ 0.66
CCDC28A-201ENST00000332797 GRM1Q13255 1194 aa19.17■□□□□ 0.66
CCDC28A-201ENST00000332797 SH3BP5LQ7L8J4 393 aa19.17■□□□□ 0.66
CCDC28A-201ENST00000332797 CSRNP1Q96S65 589 aa19.17■□□□□ 0.66
CCDC28A-201ENST00000332797 ARMT1Q9H993 441 aa19.17■□□□□ 0.66
CCDC28A-201ENST00000332797 DDTLA6NHG4 134 aaPredicted RBP19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 IREB2P48200 963 aaKnown RBP19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 ERICH6BQ5W0A0 696 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 CYP4F22Q6NT55 531 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 DNAJC5GQ8N7S2 189 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 RILPL2Q969X0 211 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 AIDAQ96BJ3 306 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 KLRG1Q96E93 195 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 HHIPL1Q96JK4 782 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 CRNKL1Q9BZJ0 848 aaKnown RBP19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 PUS7LQ9H0K6 701 aaKnown RBP19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 COL2A1P02458 1487 aaPredicted RBP19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 ATRNL1Q5VV63 1379 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 USP2O75604 605 aaPredicted RBP19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 DCAF15Q66K64 600 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 RGMBQ6NW40 437 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 MIGA2Q7L4E1 593 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 APPBP2Q92624 585 aa19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.16■□□□□ 0.66
CCDC28A-201ENST00000332797 VEGFBP49765 207 aa19.15■□□□□ 0.66
CCDC28A-201ENST00000332797 ZNF157P51786 506 aaPredicted RBP19.15■□□□□ 0.66
CCDC28A-201ENST00000332797 MAP3K11Q16584 847 aa19.15■□□□□ 0.66
CCDC28A-201ENST00000332797 CAPNS2Q96L46 248 aa19.15■□□□□ 0.66
CCDC28A-201ENST00000332797 SAP30BPQ9UHR5 308 aaKnown RBP19.15■□□□□ 0.66
CCDC28A-201ENST00000332797 OTOFQ9HC10 1997 aa19.14■□□□□ 0.65
CCDC28A-201ENST00000332797 NAV1Q8NEY1 1877 aa19.14■□□□□ 0.65
CCDC28A-201ENST00000332797 OSBP2Q969R2 916 aa19.14■□□□□ 0.65
CCDC28A-201ENST00000332797 PPP4R2Q9NY27 417 aa19.14■□□□□ 0.65
CCDC28A-201ENST00000332797 ECE1P42892 770 aa19.13■□□□□ 0.65
CCDC28A-201ENST00000332797 SLC4A8Q2Y0W8 1093 aa19.13■□□□□ 0.65
CCDC28A-201ENST00000332797 LDLRAD1Q5T700 205 aa19.13■□□□□ 0.65
CCDC28A-201ENST00000332797 TTC22Q5TAA0 569 aa19.13■□□□□ 0.65
CCDC28A-201ENST00000332797 SDR42E1Q8WUS8 393 aa19.13■□□□□ 0.65
CCDC28A-201ENST00000332797 ZNF341Q9BYN7 854 aa19.13■□□□□ 0.65
CCDC28A-201ENST00000332797 WDR33Q9C0J8 1336 aaKnown RBP19.12■□□□□ 0.65
CCDC28A-201ENST00000332797 M0R2C6 588 aa19.12■□□□□ 0.65
CCDC28A-201ENST00000332797 PRKAB2O43741 272 aa19.12■□□□□ 0.65
CCDC28A-201ENST00000332797 ANKRD13AQ8IZ07 590 aa19.12■□□□□ 0.65
CCDC28A-201ENST00000332797 CLMNQ96JQ2 1002 aa19.12■□□□□ 0.65
CCDC28A-201ENST00000332797 WRNIP1Q96S55 665 aa19.12■□□□□ 0.65
CCDC28A-201ENST00000332797 DHX36Q9H2U1 1008 aaKnown RBP19.12■□□□□ 0.65
CCDC28A-201ENST00000332797 PALD1Q9ULE6 856 aa19.12■□□□□ 0.65
CCDC28A-201ENST00000332797 MYH1P12882 1939 aa19.12■□□□□ 0.65
CCDC28A-201ENST00000332797 DDX60LQ5H9U9 1706 aaKnown RBP19.12■□□□□ 0.65
CCDC28A-201ENST00000332797 SLURP2P0DP57 97 aa19.11■□□□□ 0.65
CCDC28A-201ENST00000332797 GSPT1P15170 499 aaKnown RBP19.11■□□□□ 0.65
CCDC28A-201ENST00000332797 ZMYM1Q5SVZ6 1142 aa19.11■□□□□ 0.65
CCDC28A-201ENST00000332797 SKAP1Q86WV1 359 aa19.11■□□□□ 0.65
CCDC28A-201ENST00000332797 RASAL3Q86YV0 1011 aa19.11■□□□□ 0.65
CCDC28A-201ENST00000332797 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.11■□□□□ 0.65
CCDC28A-201ENST00000332797 SEC62Q99442 399 aaKnown RBP19.11■□□□□ 0.65
CCDC28A-201ENST00000332797 SLC4A4Q9Y6R1 1079 aa19.11■□□□□ 0.65
CCDC28A-201ENST00000332797 FAM196BA6NMK8 535 aa19.1■□□□□ 0.65
CCDC28A-201ENST00000332797 GPAA1O43292 621 aa19.1■□□□□ 0.65
CCDC28A-201ENST00000332797 HLA-DOAP06340 250 aa19.1■□□□□ 0.65
CCDC28A-201ENST00000332797 MAP3K9P80192 1104 aa19.1■□□□□ 0.65
CCDC28A-201ENST00000332797 CCDC102AQ96A19 550 aa19.1■□□□□ 0.65
CCDC28A-201ENST00000332797 SLC10A4Q96EP9 437 aa19.1■□□□□ 0.65
CCDC28A-201ENST00000332797 STRBPQ96SI9 672 aaKnown RBP19.1■□□□□ 0.65
CCDC28A-201ENST00000332797 DCP1AQ9NPI6 582 aaPredicted RBP19.1■□□□□ 0.65
CCDC28A-201ENST00000332797 SIPA1L1O43166 1804 aa19.1■□□□□ 0.65
CCDC28A-201ENST00000332797 UNCXA6NJT0 531 aa19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 AOC2O75106 756 aa19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 SLC10A3P09131 477 aa19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 ZKSCAN4Q969J2 545 aaPredicted RBP19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 ELP3Q9H9T3 547 aa19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 MCM9Q9NXL9 1143 aa19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 PI4KBQ9UBF8 816 aa19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 CSADQ9Y600 493 aa19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 FAM155AB1AL88 458 aaPredicted RBP19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 INPP5BP32019 993 aa19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 VGLL4Q14135 290 aa19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 CRACR2BQ8N4Y2 399 aaPredicted RBP19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 TRIM34Q9BYJ4 488 aa19.09■□□□□ 0.65
CCDC28A-201ENST00000332797 ATP8A2Q9NTI2 1148 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms