RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SSC5DA1L4H1 1573 aa16.98■□□□□ 0.31
LIMS1-201ENST00000332345 IGHDP01880 384 aa16.98■□□□□ 0.31
LIMS1-201ENST00000332345 ZSCAN25Q6NSZ9 544 aa16.98■□□□□ 0.31
LIMS1-201ENST00000332345 ADGRA1Q86SQ6 560 aa16.98■□□□□ 0.31
LIMS1-201ENST00000332345 RASAL3Q86YV0 1011 aa16.98■□□□□ 0.31
LIMS1-201ENST00000332345 ZFPM1Q8IX07 1006 aa16.98■□□□□ 0.31
LIMS1-201ENST00000332345 SMC5Q8IY18 1101 aa16.98■□□□□ 0.31
LIMS1-201ENST00000332345 ZNF341Q9BYN7 854 aa16.98■□□□□ 0.31
LIMS1-201ENST00000332345 WBP1LQ9NX94 342 aa16.98■□□□□ 0.31
LIMS1-201ENST00000332345 MAST2Q6P0Q8 1798 aa16.97■□□□□ 0.31
LIMS1-201ENST00000332345 HSPA1AP0DMV8 641 aaKnown RBP16.97■□□□□ 0.31
LIMS1-201ENST00000332345 HSPA1BP0DMV9 641 aaKnown RBP16.97■□□□□ 0.31
LIMS1-201ENST00000332345 PDE6AP16499 860 aa16.97■□□□□ 0.31
LIMS1-201ENST00000332345 KIF23Q02241 960 aaPredicted RBP16.97■□□□□ 0.31
LIMS1-201ENST00000332345 MIGA2Q7L4E1 593 aa16.97■□□□□ 0.31
LIMS1-201ENST00000332345 EDC3Q96F86 508 aaKnown RBP16.97■□□□□ 0.31
LIMS1-201ENST00000332345 CSRNP1Q96S65 589 aa16.97■□□□□ 0.31
LIMS1-201ENST00000332345 DDX4Q9NQI0 724 aaKnown RBP16.97■□□□□ 0.31
LIMS1-201ENST00000332345 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.97■□□□□ 0.31
LIMS1-201ENST00000332345 CSADQ9Y600 493 aa16.97■□□□□ 0.31
LIMS1-201ENST00000332345 DOCK2Q92608 1830 aa16.97■□□□□ 0.31
LIMS1-201ENST00000332345 GLRX3O76003 335 aaKnown RBP16.96■□□□□ 0.31
LIMS1-201ENST00000332345 MX1P20591 662 aa16.96■□□□□ 0.31
LIMS1-201ENST00000332345 MIGA1Q8NAN2 632 aa16.96■□□□□ 0.31
LIMS1-201ENST00000332345 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.96■□□□□ 0.31
LIMS1-201ENST00000332345 TGFBRAP1Q8WUH2 860 aa16.96■□□□□ 0.31
LIMS1-201ENST00000332345 CLMNQ96JQ2 1002 aa16.96■□□□□ 0.31
LIMS1-201ENST00000332345 ZNF532Q9HCE3 1301 aa16.96■□□□□ 0.3
LIMS1-201ENST00000332345 RFX7Q2KHR2 1363 aa16.95■□□□□ 0.3
LIMS1-201ENST00000332345 MAGEB6P1A0A0J9YX57 407 aa16.95■□□□□ 0.3
LIMS1-201ENST00000332345 DDTLA6NHG4 134 aaPredicted RBP16.95■□□□□ 0.3
LIMS1-201ENST00000332345 DYNLL1P63167 89 aaKnown RBP16.95■□□□□ 0.3
LIMS1-201ENST00000332345 SPRYD7Q5W111 196 aa16.95■□□□□ 0.3
LIMS1-201ENST00000332345 B4GALNT3Q6L9W6 998 aa16.95■□□□□ 0.3
LIMS1-201ENST00000332345 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.95■□□□□ 0.3
LIMS1-201ENST00000332345 SH3BP5LQ7L8J4 393 aa16.95■□□□□ 0.3
LIMS1-201ENST00000332345 WRNIP1Q96S55 665 aa16.95■□□□□ 0.3
LIMS1-201ENST00000332345 OSBPL5Q9H0X9 879 aaPredicted RBP16.95■□□□□ 0.3
LIMS1-201ENST00000332345 DHX36Q9H2U1 1008 aaKnown RBP16.95■□□□□ 0.3
LIMS1-201ENST00000332345 CA12O43570 354 aa16.94■□□□□ 0.3
LIMS1-201ENST00000332345 ZBTB48P10074 688 aaPredicted RBP16.94■□□□□ 0.3
LIMS1-201ENST00000332345 ADD2P35612 726 aa16.94■□□□□ 0.3
LIMS1-201ENST00000332345 INHBEP58166 350 aa16.94■□□□□ 0.3
LIMS1-201ENST00000332345 MAP3K10Q02779 954 aa16.94■□□□□ 0.3
LIMS1-201ENST00000332345 LRRFIP1Q32MZ4 808 aaKnown RBP16.94■□□□□ 0.3
LIMS1-201ENST00000332345 TSHZ3Q63HK5 1081 aa16.94■□□□□ 0.3
LIMS1-201ENST00000332345 OTUD7AQ8TE49 926 aaPredicted RBP16.94■□□□□ 0.3
LIMS1-201ENST00000332345 ZIC5Q96T25 663 aa16.94■□□□□ 0.3
LIMS1-201ENST00000332345 ZNF112Q9UJU3 913 aa16.94■□□□□ 0.3
LIMS1-201ENST00000332345 TCRBV5S4A2TA0A5A2 114 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 TBC1D12O60347 775 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 USP5P45974 858 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 NUCB1Q02818 461 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 VGLL4Q14135 290 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 UBE3CQ15386 1083 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 CHD1LQ86WJ1 897 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 MAPKAPK5Q8IW41 473 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 KBTBD3Q8NAB2 608 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 WNK4Q96J92 1243 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 LNPKQ9C0E8 428 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 ELP3Q9H9T3 547 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 PI4KBQ9UBF8 816 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 STAP2Q9UGK3 403 aa16.93■□□□□ 0.3
LIMS1-201ENST00000332345 ATRNL1Q5VV63 1379 aa16.92■□□□□ 0.3
LIMS1-201ENST00000332345 TM4SF4P48230 202 aa16.92■□□□□ 0.3
LIMS1-201ENST00000332345 CTCFP49711 727 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-201ENST00000332345 SREBF2Q12772 1141 aa16.92■□□□□ 0.3
LIMS1-201ENST00000332345 MKRN3Q13064 507 aaKnown RBP16.92■□□□□ 0.3
LIMS1-201ENST00000332345 PI4K2BQ8TCG2 481 aa16.92■□□□□ 0.3
LIMS1-201ENST00000332345 ZKSCAN4Q969J2 545 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-201ENST00000332345 OPTNQ96CV9 577 aa16.92■□□□□ 0.3
LIMS1-201ENST00000332345 RIOK1Q9BRS2 568 aaKnown RBP16.92■□□□□ 0.3
LIMS1-201ENST00000332345 CRNKL1Q9BZJ0 848 aaKnown RBP16.92■□□□□ 0.3
LIMS1-201ENST00000332345 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.92■□□□□ 0.3
LIMS1-201ENST00000332345 FLT1P17948 1338 aa16.92■□□□□ 0.3
LIMS1-201ENST00000332345 COL2A1P02458 1487 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-201ENST00000332345 THSD7BQ9C0I4 1608 aa16.92■□□□□ 0.3
LIMS1-201ENST00000332345 MANSC4A6NHS7 340 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-201ENST00000332345 ZFYP08048 801 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-201ENST00000332345 PDE1AP54750 535 aa16.91■□□□□ 0.3
LIMS1-201ENST00000332345 ERO1BQ86YB8 467 aa16.91■□□□□ 0.3
LIMS1-201ENST00000332345 FOXP4Q8IVH2 680 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-201ENST00000332345 MYH7P12883 1935 aa16.91■□□□□ 0.3
LIMS1-201ENST00000332345 SALL3Q9BXA9 1300 aa16.91■□□□□ 0.3
LIMS1-201ENST00000332345 PHF20L1A8MW92 1017 aa16.9■□□□□ 0.3
LIMS1-201ENST00000332345 FOXN1O15353 648 aa16.9■□□□□ 0.3
LIMS1-201ENST00000332345 HLA-DOAP06340 250 aa16.9■□□□□ 0.3
LIMS1-201ENST00000332345 INPP5BP32019 993 aa16.9■□□□□ 0.3
LIMS1-201ENST00000332345 POTEDQ86YR6 584 aa16.9■□□□□ 0.3
LIMS1-201ENST00000332345 TRIM34Q9BYJ4 488 aa16.9■□□□□ 0.3
LIMS1-201ENST00000332345 HERC5Q9UII4 1024 aaKnown RBP16.9■□□□□ 0.3
LIMS1-201ENST00000332345 PALD1Q9ULE6 856 aa16.9■□□□□ 0.3
LIMS1-201ENST00000332345 CDK5RAP2Q96SN8 1893 aa16.9■□□□□ 0.3
LIMS1-201ENST00000332345 FOCADQ5VW36 1801 aa16.89■□□□□ 0.29
LIMS1-201ENST00000332345 RNF113AO15541 343 aaKnown RBP16.89■□□□□ 0.29
LIMS1-201ENST00000332345 CTNND1O60716 968 aaKnown RBP16.89■□□□□ 0.29
LIMS1-201ENST00000332345 NOL9Q5SY16 702 aaKnown RBP16.89■□□□□ 0.29
LIMS1-201ENST00000332345 TTC6Q86TZ1 520 aa16.89■□□□□ 0.29
LIMS1-201ENST00000332345 PICK1Q9NRD5 415 aa16.89■□□□□ 0.29
LIMS1-201ENST00000332345 SAP30BPQ9UHR5 308 aaKnown RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms