RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SMTNP53814 917 aa15.88■□□□□ 0.13
COL7A1-201ENST00000328333 WHAMMQ8TF30 809 aa15.88■□□□□ 0.13
COL7A1-201ENST00000328333 KRT3P12035 628 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 ZNF75DP51815 510 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 ARID5AQ03989 594 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 PPP2R5BQ15173 497 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 WDR44Q5JSH3 913 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 CAPN7Q9Y6W3 813 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 KIFC2Q96AC6 838 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 FAM204AQ9H8W3 233 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 HMGXB3Q12766 1538 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 NUTM2BA6NNL0 878 aaPredicted RBP15.87■□□□□ 0.13
COL7A1-201ENST00000328333 NUTM2EB1AL46 878 aaPredicted RBP15.87■□□□□ 0.13
COL7A1-201ENST00000328333 PDE1AP54750 535 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 CCDC89Q8N998 374 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 GRK7Q8WTQ7 553 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 LEO1Q8WVC0 666 aaPredicted RBP15.87■□□□□ 0.13
COL7A1-201ENST00000328333 CAPS2Q9BXY5 557 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 TMOD3Q9NYL9 352 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 KAT6AQ92794 2004 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 PLXNC1O60486 1568 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 CEP104O60308 925 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 PDCD7Q8N8D1 485 aaKnown RBP15.87■□□□□ 0.13
COL7A1-201ENST00000328333 ORC6Q9Y5N6 252 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 SAR1BQ9Y6B6 198 aa15.87■□□□□ 0.13
COL7A1-201ENST00000328333 GNA14O95837 355 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 KRT71Q3SY84 523 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 CABP5Q9NP86 173 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 FAM177BA6PVY3 158 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 CALUO43852 315 aaPredicted RBP15.86■□□□□ 0.13
COL7A1-201ENST00000328333 C20orf194Q5TEA3 1177 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 HAUS3Q68CZ6 603 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 BRF1Q92994 677 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 MYO1AQ9UBC5 1043 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 SSH2Q76I76 1423 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 RRP36Q96EU6 259 aaKnown RBP15.86■□□□□ 0.13
COL7A1-201ENST00000328333 RBSNQ9H1K0 784 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 SEPT10Q9P0V9 454 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 RIPOR2Q9Y4F9 1068 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 DDX41Q9UJV9 622 aaKnown RBP15.86■□□□□ 0.13
COL7A1-201ENST00000328333 SMIM24O75264 130 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 MAN1A1P33908 653 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 PPP1R42Q7Z4L9 355 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 ZKSCAN3Q9BRR0 538 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 IFIH1Q9BYX4 1025 aaKnown RBP15.86■□□□□ 0.13
COL7A1-201ENST00000328333 TXLNGQ9NUQ3 528 aa15.86■□□□□ 0.13
COL7A1-201ENST00000328333 RPGRQ92834 1020 aaKnown RBP15.85■□□□□ 0.13
COL7A1-201ENST00000328333 CNOT10Q9H9A5 744 aaKnown RBP15.85■□□□□ 0.13
COL7A1-201ENST00000328333 BCRP11274 1271 aa15.85■□□□□ 0.13
COL7A1-201ENST00000328333 Q6ZUG5 572 aa15.85■□□□□ 0.13
COL7A1-201ENST00000328333 ISM2Q6H9L7 571 aa15.85■□□□□ 0.13
COL7A1-201ENST00000328333 XAB2Q9HCS7 855 aaKnown RBP15.85■□□□□ 0.13
COL7A1-201ENST00000328333 STX2P32856 288 aa15.85■□□□□ 0.13
COL7A1-201ENST00000328333 NAPAP54920 295 aa15.85■□□□□ 0.13
COL7A1-201ENST00000328333 KARSQ15046 597 aaKnown RBP15.85■□□□□ 0.13
COL7A1-201ENST00000328333 PLCD3Q8N3E9 789 aa15.85■□□□□ 0.13
COL7A1-201ENST00000328333 CCDC169A6NNP5 214 aa15.85■□□□□ 0.13
COL7A1-201ENST00000328333 RSPH3Q86UC2 560 aa15.85■□□□□ 0.13
COL7A1-201ENST00000328333 SPINK5Q9NQ38 1064 aaPredicted RBP15.85■□□□□ 0.13
COL7A1-201ENST00000328333 PRDM11Q9NQV5 511 aa15.85■□□□□ 0.13
COL7A1-201ENST00000328333 BAIAP2L1Q9UHR4 511 aa15.85■□□□□ 0.13
COL7A1-201ENST00000328333 ZNF644Q9H582 1327 aaPredicted RBP15.85■□□□□ 0.13
COL7A1-201ENST00000328333 SUN1O94901 812 aa15.84■□□□□ 0.13
COL7A1-201ENST00000328333 NBPF9Q3BBW0 867 aa15.84■□□□□ 0.13
COL7A1-201ENST00000328333 CCDC117Q8IWD4 279 aaPredicted RBP15.84■□□□□ 0.13
COL7A1-201ENST00000328333 HAUS1Q96CS2 278 aa15.84■□□□□ 0.13
COL7A1-201ENST00000328333 LRRC23Q53EV4 343 aaPredicted RBP15.84■□□□□ 0.13
COL7A1-201ENST00000328333 TMOD4Q9NZQ9 345 aa15.84■□□□□ 0.13
COL7A1-201ENST00000328333 PRXQ9BXM0 1461 aa15.84■□□□□ 0.13
COL7A1-201ENST00000328333 MARCKSP29966 332 aaPredicted RBP15.84■□□□□ 0.13
COL7A1-201ENST00000328333 RABGGTAQ92696 567 aa15.84■□□□□ 0.13
COL7A1-201ENST00000328333 TPX2Q9ULW0 747 aaKnown RBP15.84■□□□□ 0.13
COL7A1-201ENST00000328333 IBTKQ9P2D0 1353 aaPredicted RBP15.84■□□□□ 0.13
COL7A1-201ENST00000328333 KCNG1Q9UIX4 513 aa15.84■□□□□ 0.13
COL7A1-201ENST00000328333 CTNNA1P35221 906 aaKnown RBP15.84■□□□□ 0.13
COL7A1-201ENST00000328333 MUM1L1Q5H9M0 696 aa15.84■□□□□ 0.13
COL7A1-201ENST00000328333 FBXO41Q8TF61 875 aa15.84■□□□□ 0.13
COL7A1-201ENST00000328333 NOC4LQ9BVI4 516 aaKnown RBP15.84■□□□□ 0.13
COL7A1-201ENST00000328333 CLSTN2Q9H4D0 955 aa15.84■□□□□ 0.13
COL7A1-201ENST00000328333 DHX32Q7L7V1 743 aaKnown RBP15.83■□□□□ 0.13
COL7A1-201ENST00000328333 EIF3CLB5ME19 914 aaKnown RBP15.83■□□□□ 0.13
COL7A1-201ENST00000328333 CCDC125Q86Z20 511 aa15.83■□□□□ 0.13
COL7A1-201ENST00000328333 EIF3CQ99613 913 aaKnown RBP15.83■□□□□ 0.13
COL7A1-201ENST00000328333 STX8Q9UNK0 236 aa15.83■□□□□ 0.13
COL7A1-201ENST00000328333 SV2BQ7L1I2 683 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 TUBB6Q9BUF5 446 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 BIVM-ERCC5R4GMW8 1640 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 INPP1P49441 399 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 LMNB2Q03252 620 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 RAPGEF1Q13905 1077 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 SPZ1Q9BXG8 430 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 ASIC3Q9UHC3 531 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 SCOCQ9UIL1 159 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 RBM8AQ9Y5S9 174 aaKnown RBP15.83■□□□□ 0.12
COL7A1-201ENST00000328333 SCINQ9Y6U3 715 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 ZC3H6P61129 1189 aaKnown RBP15.83■□□□□ 0.12
COL7A1-201ENST00000328333 ANKRD20A4Q4UJ75 823 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 ANKRD20A8PQ5CZ79 823 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 ANKRD20A2Q5SQ80 823 aa15.83■□□□□ 0.12
COL7A1-201ENST00000328333 ANKRD20A1Q5TYW2 823 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms