RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 ARHGAP42A6NI28 874 aa8.82□□□□□ -1
CIITA-201ENST00000324288 SLC52A1Q9NWF4 448 aa8.82□□□□□ -1
CIITA-201ENST00000324288 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.82□□□□□ -1
CIITA-201ENST00000324288 TTLL3Q9Y4R7 772 aa8.82□□□□□ -1
CIITA-201ENST00000324288 E2F4Q16254 413 aa8.82□□□□□ -1
CIITA-201ENST00000324288 LEO1Q8WVC0 666 aaPredicted RBP8.82□□□□□ -1
CIITA-201ENST00000324288 EIF6P56537 245 aaKnown RBP8.82□□□□□ -1
CIITA-201ENST00000324288 SLF1Q9BQI6 1058 aa8.82□□□□□ -1
CIITA-201ENST00000324288 CC2D2AQ9P2K1 1620 aa8.82□□□□□ -1
CIITA-201ENST00000324288 TRAF5O00463 557 aa8.82□□□□□ -1
CIITA-201ENST00000324288 GIGYF1O75420 1035 aaPredicted RBP8.82□□□□□ -1
CIITA-201ENST00000324288 CALCOCO2Q13137 446 aa8.82□□□□□ -1
CIITA-201ENST00000324288 CLUL1Q15846 466 aa8.82□□□□□ -1
CIITA-201ENST00000324288 AP1ARQ63HQ0 302 aa8.82□□□□□ -1
CIITA-201ENST00000324288 IFT20Q8IY31 132 aa8.82□□□□□ -1
CIITA-201ENST00000324288 UTP11Q9Y3A2 253 aaKnown RBP8.82□□□□□ -1
CIITA-201ENST00000324288 I3L4J1 428 aa8.81□□□□□ -1
CIITA-201ENST00000324288 USP37Q86T82 979 aa8.81□□□□□ -1
CIITA-201ENST00000324288 PDCD7Q8N8D1 485 aaKnown RBP8.81□□□□□ -1
CIITA-201ENST00000324288 RBM28Q9NW13 759 aaKnown RBP8.81□□□□□ -1
CIITA-201ENST00000324288 TAB2Q9NYJ8 693 aa8.81□□□□□ -1
CIITA-201ENST00000324288 PTPN23Q9H3S7 1636 aa8.81□□□□□ -1
CIITA-201ENST00000324288 TRIM75PA6NK02 468 aa8.81□□□□□ -1
CIITA-201ENST00000324288 CEP104O60308 925 aa8.81□□□□□ -1
CIITA-201ENST00000324288 SORBS3O60504 671 aa8.81□□□□□ -1
CIITA-201ENST00000324288 SMIM24O75264 130 aa8.81□□□□□ -1
CIITA-201ENST00000324288 SETDB2Q96T68 719 aa8.81□□□□□ -1
CIITA-201ENST00000324288 AK2P54819 239 aa8.81□□□□□ -1
CIITA-201ENST00000324288 MEIS3Q99687 375 aa8.81□□□□□ -1
CIITA-201ENST00000324288 ATP2A2P16615 1042 aaKnown RBP8.81□□□□□ -1
CIITA-201ENST00000324288 RASSF2P50749 326 aa8.81□□□□□ -1
CIITA-201ENST00000324288 NCBP1Q09161 790 aaKnown RBP8.81□□□□□ -1
CIITA-201ENST00000324288 FAM204AQ9H8W3 233 aa8.81□□□□□ -1
CIITA-201ENST00000324288 CASC4Q6P4E1 433 aa8.81□□□□□ -1
CIITA-201ENST00000324288 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.81□□□□□ -1
CIITA-201ENST00000324288 RHPN1Q8TCX5 695 aa8.81□□□□□ -1
CIITA-201ENST00000324288 STAG1Q8WVM7 1258 aa8.81□□□□□ -1
CIITA-201ENST00000324288 hCG_2014768A0A024R1R8 64 aa8.81□□□□□ -1
CIITA-201ENST00000324288 KRT71Q3SY84 523 aa8.81□□□□□ -1
CIITA-201ENST00000324288 BSPRYQ5W0U4 402 aa8.81□□□□□ -1
CIITA-201ENST00000324288 MRPL46Q9H2W6 279 aaKnown RBP8.81□□□□□ -1
CIITA-201ENST00000324288 FCHSD1Q86WN1 690 aa8.81□□□□□ -1
CIITA-201ENST00000324288 PAG1Q9NWQ8 432 aa8.81□□□□□ -1
CIITA-201ENST00000324288 CEBPAP49715 358 aaPredicted RBP8.81□□□□□ -1
CIITA-201ENST00000324288 PPP2R5AQ15172 486 aa8.81□□□□□ -1
CIITA-201ENST00000324288 ASIC2Q16515 512 aa8.81□□□□□ -1
CIITA-201ENST00000324288 ERCC6LQ2NKX8 1250 aa8.81□□□□□ -1
CIITA-201ENST00000324288 CCDC14Q49A88 953 aa8.81□□□□□ -1
CIITA-201ENST00000324288 MCMDC2Q4G0Z9 681 aa8.81□□□□□ -1
CIITA-201ENST00000324288 CCT5P48643 541 aa8.81□□□□□ -1
CIITA-201ENST00000324288 ITIH3Q06033 890 aa8.81□□□□□ -1
CIITA-201ENST00000324288 RBBP5Q15291 538 aaKnown RBP8.8□□□□□ -1
CIITA-201ENST00000324288 SNX21Q969T3 373 aa8.8□□□□□ -1
CIITA-201ENST00000324288 VCXQ9H320 206 aa8.8□□□□□ -1
CIITA-201ENST00000324288 MTUS1Q9ULD2 1270 aa8.8□□□□□ -1
CIITA-201ENST00000324288 INF2Q27J81 1249 aa8.8□□□□□ -1
CIITA-201ENST00000324288 NIP7Q9Y221 180 aaKnown RBP eCLIP8.8□□□□□ -1
CIITA-201ENST00000324288 ABCC11Q96J66 1382 aa8.8□□□□□ -1
CIITA-201ENST00000324288 CCDC169A6NNP5 214 aa8.8□□□□□ -1
CIITA-201ENST00000324288 DDX39AO00148 427 aaKnown RBP8.8□□□□□ -1
CIITA-201ENST00000324288 CREB3L3Q68CJ9 461 aa8.8□□□□□ -1
CIITA-201ENST00000324288 ANKRD13DQ6ZTN6 518 aa8.8□□□□□ -1
CIITA-201ENST00000324288 RTL9Q8NET4 1388 aa8.8□□□□□ -1
CIITA-201ENST00000324288 GAS8O95995 478 aa8.8□□□□□ -1
CIITA-201ENST00000324288 KRT79Q5XKE5 535 aa8.8□□□□□ -1
CIITA-201ENST00000324288 MRFAP1L1Q96HT8 127 aa8.8□□□□□ -1
CIITA-201ENST00000324288 ARHGEF11O15085 1522 aa8.8□□□□□ -1
CIITA-201ENST00000324288 RAD51AP2Q09MP3 1159 aa8.8□□□□□ -1
CIITA-201ENST00000324288 ZYXQ15942 572 aaKnown RBP8.8□□□□□ -1
CIITA-201ENST00000324288 FBXO31Q5XUX0 539 aaPredicted RBP8.8□□□□□ -1
CIITA-201ENST00000324288 SLC24A3Q9HC58 644 aa8.8□□□□□ -1
CIITA-201ENST00000324288 ASIC3Q9UHC3 531 aa8.8□□□□□ -1
CIITA-201ENST00000324288 CROCCQ5TZA2 2017 aa8.8□□□□□ -1
CIITA-201ENST00000324288 BEND3Q5T5X7 828 aa8.8□□□□□ -1
CIITA-201ENST00000324288 DENND2CQ68D51 928 aa8.8□□□□□ -1
CIITA-201ENST00000324288 ZNF804AQ7Z570 1209 aa8.8□□□□□ -1
CIITA-201ENST00000324288 MAN1A1P33908 653 aa8.8□□□□□ -1
CIITA-201ENST00000324288 HS1BP3Q53T59 392 aa8.8□□□□□ -1
CIITA-201ENST00000324288 CCDC117Q8IWD4 279 aaPredicted RBP8.8□□□□□ -1
CIITA-201ENST00000324288 ARHGAP25P42331 645 aa8.8□□□□□ -1
CIITA-201ENST00000324288 AMOTL2Q9Y2J4 779 aa8.8□□□□□ -1
CIITA-201ENST00000324288 CCDC141Q6ZP82 1450 aa8.79□□□□□ -1
CIITA-201ENST00000324288 ELP1O95163 1332 aa8.79□□□□□ -1
CIITA-201ENST00000324288 TMED1Q13445 227 aa8.79□□□□□ -1
CIITA-201ENST00000324288 CNGA4Q8IV77 575 aa8.79□□□□□ -1
CIITA-201ENST00000324288 C8orf37Q96NL8 207 aa8.79□□□□□ -1
CIITA-201ENST00000324288 ATP5DP30049 168 aa8.79□□□□□ -1
CIITA-201ENST00000324288 NOX5Q96PH1 765 aa8.79□□□□□ -1
CIITA-201ENST00000324288 ANO3Q9BYT9 981 aa8.79□□□□□ -1
CIITA-201ENST00000324288 RP1P56715 2156 aa8.79□□□□□ -1
CIITA-201ENST00000324288 BICDL2A1A5D9 508 aa8.79□□□□□ -1
CIITA-201ENST00000324288 SNRPA1P09661 255 aaKnown RBP8.79□□□□□ -1
CIITA-201ENST00000324288 POLD1P28340 1107 aa8.79□□□□□ -1
CIITA-201ENST00000324288 OGFOD1Q8N543 542 aa8.79□□□□□ -1
CIITA-201ENST00000324288 CNNM2Q9H8M5 875 aa8.79□□□□□ -1
CIITA-201ENST00000324288 HDAC9Q9UKV0 1011 aa8.79□□□□□ -1
CIITA-201ENST00000324288 TRIM35Q9UPQ4 493 aa8.79□□□□□ -1
CIITA-201ENST00000324288 INTUQ9ULD6 942 aa8.79□□□□□ -1
CIITA-201ENST00000324288 SPECC1L-ADORA2AF8WAN1 911 aa8.79□□□□□ -1
CIITA-201ENST00000324288 SEC31AO94979 1220 aaKnown RBP8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms