RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 LPIN2Q92539 896 aa16.71■□□□□ 0.27
TCOF1-201ENST00000323668 FANCLQ9NW38 375 aa16.71■□□□□ 0.27
TCOF1-201ENST00000323668 CAMSAP1Q5T5Y3 1602 aa16.71■□□□□ 0.27
TCOF1-201ENST00000323668 USP8P40818 1118 aa16.71■□□□□ 0.27
TCOF1-201ENST00000323668 CHMP4BP1P59074 171 aa16.71■□□□□ 0.27
TCOF1-201ENST00000323668 TRMT44Q8IYL2 757 aaKnown RBP16.71■□□□□ 0.27
TCOF1-201ENST00000323668 FBXO3Q9UK99 471 aa16.71■□□□□ 0.27
TCOF1-201ENST00000323668 IVLP07476 585 aa16.71■□□□□ 0.26
TCOF1-201ENST00000323668 MATR3P43243 847 aaKnown RBP eCLIP16.71■□□□□ 0.26
TCOF1-201ENST00000323668 DMTNQ08495 405 aa16.71■□□□□ 0.26
TCOF1-201ENST00000323668 SLC4A8Q2Y0W8 1093 aa16.71■□□□□ 0.26
TCOF1-201ENST00000323668 CCDC178Q5BJE1 867 aa16.71■□□□□ 0.26
TCOF1-201ENST00000323668 NIP7Q9Y221 180 aaKnown RBP eCLIP16.71■□□□□ 0.26
TCOF1-201ENST00000323668 ZC3H13Q5T200 1668 aaKnown RBP16.71■□□□□ 0.26
TCOF1-201ENST00000323668 PDE8AO60658 829 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 ENOX2Q16206 610 aaKnown RBP16.7■□□□□ 0.26
TCOF1-201ENST00000323668 EPHA10Q5JZY3 1008 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 HDXQ7Z353 690 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 VAT1LQ9HCJ6 419 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 V9GY48 417 aaPredicted RBP16.7■□□□□ 0.26
TCOF1-201ENST00000323668 BAG3O95817 575 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 CTDSPL2Q05D32 466 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 SARM1Q6SZW1 724 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 NOSTRINQ8IVI9 506 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 PUS3Q9BZE2 481 aaKnown RBP16.7■□□□□ 0.26
TCOF1-201ENST00000323668 VPS18Q9P253 973 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 ZMYM6O95789 1325 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 LDHCP07864 332 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 TUBB2AQ13885 445 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 SPTY2D1Q68D10 685 aaPredicted RBP16.7■□□□□ 0.26
TCOF1-201ENST00000323668 TUBB2BQ9BVA1 445 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 VPS16Q9H269 839 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 RBM28Q9NW13 759 aaKnown RBP16.7■□□□□ 0.26
TCOF1-201ENST00000323668 SERTAD1Q9UHV2 236 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 TTF2Q9UNY4 1162 aaKnown RBP16.7■□□□□ 0.26
TCOF1-201ENST00000323668 KIDINS220Q9ULH0 1771 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 USP42Q9H9J4 1324 aaKnown RBP16.7■□□□□ 0.26
TCOF1-201ENST00000323668 KIF5AQ12840 1032 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 CCDC96Q2M329 555 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 AKNAD1Q5T1N1 836 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 DNAJC10Q8IXB1 793 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 FAM107BQ9H098 131 aa16.7■□□□□ 0.26
TCOF1-201ENST00000323668 ZPR1O75312 459 aa16.69■□□□□ 0.26
TCOF1-201ENST00000323668 ADKP55263 362 aaKnown RBP16.69■□□□□ 0.26
TCOF1-201ENST00000323668 KRBA2Q6ZNG9 492 aa16.69■□□□□ 0.26
TCOF1-201ENST00000323668 PHACTR2O75167 634 aa16.69■□□□□ 0.26
TCOF1-201ENST00000323668 PCDHA5Q9Y5H7 936 aa16.69■□□□□ 0.26
TCOF1-201ENST00000323668 SYNRGQ9UMZ2 1314 aa16.69■□□□□ 0.26
TCOF1-201ENST00000323668 NUTM2BA6NNL0 878 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-201ENST00000323668 NUTM2EB1AL46 878 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-201ENST00000323668 ERVV-2B6SEH9 535 aa16.69■□□□□ 0.26
TCOF1-201ENST00000323668 WDHD1O75717 1129 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-201ENST00000323668 PPP2R5BQ15173 497 aa16.69■□□□□ 0.26
TCOF1-201ENST00000323668 CPS1P31327 1500 aa16.69■□□□□ 0.26
TCOF1-201ENST00000323668 DLC1Q96QB1 1528 aa16.69■□□□□ 0.26
TCOF1-201ENST00000323668 ASIC1P78348 528 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 CCDC40Q4G0X9 1142 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 CLIC6Q96NY7 704 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 NAA15Q9BXJ9 866 aaKnown RBP16.68■□□□□ 0.26
TCOF1-201ENST00000323668 PATL2C9JE40 543 aaKnown RBP16.68■□□□□ 0.26
TCOF1-201ENST00000323668 IKBKBO14920 756 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 CIAO1O76071 339 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 DTHD1Q6ZMT9 781 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 PPP1R13BQ96KQ4 1090 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 CCDC42Q96M95 316 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 ALDH8A1Q9H2A2 487 aaPredicted RBP16.68■□□□□ 0.26
TCOF1-201ENST00000323668 CTDP1Q9Y5B0 961 aaPredicted RBP16.68■□□□□ 0.26
TCOF1-201ENST00000323668 UTP14CQ5TAP6 766 aaKnown RBP16.68■□□□□ 0.26
TCOF1-201ENST00000323668 WWC2Q6AWC2 1192 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 HEATR3Q7Z4Q2 680 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 OSBP2Q969R2 916 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 ZBTB9Q96C00 473 aa16.68■□□□□ 0.26
TCOF1-201ENST00000323668 NAPGQ99747 312 aaPredicted RBP16.68■□□□□ 0.26
TCOF1-201ENST00000323668 BTBD18B2RXH4 712 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 TACC1O75410 805 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 TSGA10IPQ3SY00 556 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 PLA2G4DQ86XP0 818 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 TMTC1Q8IUR5 882 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 GPR161Q8N6U8 529 aaKnown RBP16.67■□□□□ 0.26
TCOF1-201ENST00000323668 SPATA5Q8NB90 893 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 PPP2R2CQ9Y2T4 447 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 ADGRB2O60241 1585 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 PDE6AP16499 860 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 ADORA1P30542 326 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 ARID5BQ14865 1188 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.67■□□□□ 0.26
TCOF1-201ENST00000323668 CTNND2Q9UQB3 1225 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 KIF23Q02241 960 aaPredicted RBP16.67■□□□□ 0.26
TCOF1-201ENST00000323668 EFCAB8A8MWE9 144 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 TRIM14Q14142 442 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 CCDC122Q5T0U0 273 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 VPS36Q86VN1 386 aa16.67■□□□□ 0.26
TCOF1-201ENST00000323668 TSPY3P0CV98 308 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 TSPY8P0CW00 308 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 ZFP91Q96JP5 570 aaPredicted RBP16.66■□□□□ 0.26
TCOF1-201ENST00000323668 ERBB3P21860 1342 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 KRT9P35527 623 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 ATP6V1AP38606 617 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 FERMT2Q96AC1 680 aa16.66■□□□□ 0.26
TCOF1-201ENST00000323668 DRC1Q96MC2 740 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms