RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 NECTIN1Q15223 517 aa18.35■□□□□ 0.53
PDLIM5-202ENST00000318007 ZSCAN29Q8IWY8 852 aaPredicted RBP18.35■□□□□ 0.53
PDLIM5-202ENST00000318007 U3KPZ7 1027 aaPredicted RBP18.35■□□□□ 0.53
PDLIM5-202ENST00000318007 HSPA4P34932 840 aa18.35■□□□□ 0.53
PDLIM5-202ENST00000318007 EAPPQ56P03 285 aaPredicted RBP18.35■□□□□ 0.53
PDLIM5-202ENST00000318007 CTR9Q6PD62 1173 aa18.35■□□□□ 0.53
PDLIM5-202ENST00000318007 ZNF70Q9UC06 446 aaPredicted RBP18.35■□□□□ 0.53
PDLIM5-202ENST00000318007 ZNF213O14771 459 aa18.34■□□□□ 0.53
PDLIM5-202ENST00000318007 CPA1P15085 419 aa18.34■□□□□ 0.53
PDLIM5-202ENST00000318007 HIRAP54198 1017 aaPredicted RBP18.34■□□□□ 0.53
PDLIM5-202ENST00000318007 IMMTQ16891 758 aaKnown RBP18.34■□□□□ 0.53
PDLIM5-202ENST00000318007 ADCK5Q3MIX3 580 aa18.34■□□□□ 0.53
PDLIM5-202ENST00000318007 TOMM22Q9NS69 142 aa18.34■□□□□ 0.53
PDLIM5-202ENST00000318007 TMOD2Q9NZR1 351 aa18.34■□□□□ 0.53
PDLIM5-202ENST00000318007 NAV1Q8NEY1 1877 aa18.34■□□□□ 0.53
PDLIM5-202ENST00000318007 POLR3DP05423 398 aaPredicted RBP18.33■□□□□ 0.53
PDLIM5-202ENST00000318007 PLCD1P51178 756 aa18.33■□□□□ 0.53
PDLIM5-202ENST00000318007 ANGEL2Q5VTE6 544 aaKnown RBP18.33■□□□□ 0.53
PDLIM5-202ENST00000318007 CDAN1Q8IWY9 1227 aa18.33■□□□□ 0.53
PDLIM5-202ENST00000318007 MRIQ9BWK5 157 aa18.33■□□□□ 0.53
PDLIM5-202ENST00000318007 ATP8A2Q9NTI2 1148 aa18.33■□□□□ 0.53
PDLIM5-202ENST00000318007 FAM198AQ9UFP1 575 aa18.33■□□□□ 0.53
PDLIM5-202ENST00000318007 HACL1Q9UJ83 578 aa18.33■□□□□ 0.53
PDLIM5-202ENST00000318007 SNX14Q9Y5W7 946 aa18.33■□□□□ 0.53
PDLIM5-202ENST00000318007 ECM29Q5VYK3 1845 aa18.33■□□□□ 0.53
PDLIM5-202ENST00000318007 PRDM1O75626 825 aa18.33■□□□□ 0.52
PDLIM5-202ENST00000318007 TMED8Q6PL24 325 aaPredicted RBP18.33■□□□□ 0.52
PDLIM5-202ENST00000318007 DYNLL2Q96FJ2 89 aa18.33■□□□□ 0.52
PDLIM5-202ENST00000318007 UPF3BQ9BZI7 483 aaKnown RBP18.33■□□□□ 0.52
PDLIM5-202ENST00000318007 GGA3Q9NZ52 723 aa18.33■□□□□ 0.52
PDLIM5-202ENST00000318007 FAM196BA6NMK8 535 aa18.32■□□□□ 0.52
PDLIM5-202ENST00000318007 PPARAQ07869 468 aa18.32■□□□□ 0.52
PDLIM5-202ENST00000318007 SPDYE2Q495Y8 402 aa18.32■□□□□ 0.52
PDLIM5-202ENST00000318007 RRP12Q5JTH9 1297 aaKnown RBP18.32■□□□□ 0.52
PDLIM5-202ENST00000318007 PRAMEF18Q5VWM3 479 aa18.32■□□□□ 0.52
PDLIM5-202ENST00000318007 DLK2Q6UY11 383 aa18.32■□□□□ 0.52
PDLIM5-202ENST00000318007 TBC1D10CQ8IV04 446 aa18.32■□□□□ 0.52
PDLIM5-202ENST00000318007 TMEM39BQ9GZU3 492 aa18.32■□□□□ 0.52
PDLIM5-202ENST00000318007 NBPF3Q9H094 633 aa18.32■□□□□ 0.52
PDLIM5-202ENST00000318007 IGSF3O75054 1194 aa18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 ZKSCAN1P17029 563 aaPredicted RBP18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 STOX1Q6ZVD7 989 aa18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 TCEANC2Q96MN5 208 aa18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 OSBPL5Q9H0X9 879 aaPredicted RBP18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 MKRN1Q9UHC7 482 aaKnown RBP18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 CTNNA3Q9UI47 895 aa18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 DDTLA6NHG4 134 aaPredicted RBP18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 EPHX2P34913 555 aa18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 RNF20Q5VTR2 975 aa18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 CHST3Q7LGC8 479 aa18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 SLC44A5Q8NCS7 719 aa18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 NKX2-3Q8TAU0 364 aa18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 ZBED3Q96IU2 234 aaPredicted RBP18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 JAKMIP1Q96N16 626 aaKnown RBP18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 RRAGCQ9HB90 399 aa18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 ADARB2Q9NS39 739 aaKnown RBP18.31■□□□□ 0.52
PDLIM5-202ENST00000318007 EIF5BO60841 1220 aaKnown RBP18.3■□□□□ 0.52
PDLIM5-202ENST00000318007 POTEIP0CG38 1075 aa18.3■□□□□ 0.52
PDLIM5-202ENST00000318007 POTEJP0CG39 1038 aa18.3■□□□□ 0.52
PDLIM5-202ENST00000318007 RBM25P49756 843 aaKnown RBP18.3■□□□□ 0.52
PDLIM5-202ENST00000318007 CERS3Q8IU89 383 aa18.3■□□□□ 0.52
PDLIM5-202ENST00000318007 MTMR14Q8NCE2 650 aa18.3■□□□□ 0.52
PDLIM5-202ENST00000318007 TACC3Q9Y6A5 838 aa18.3■□□□□ 0.52
PDLIM5-202ENST00000318007 ZC3H4Q9UPT8 1303 aaKnown RBP18.3■□□□□ 0.52
PDLIM5-202ENST00000318007 KIF2CQ99661 725 aa18.3■□□□□ 0.52
PDLIM5-202ENST00000318007 ARPP21Q9UBL0 812 aaPredicted RBP18.3■□□□□ 0.52
PDLIM5-202ENST00000318007 NEDD4P46934 1319 aa18.29■□□□□ 0.52
PDLIM5-202ENST00000318007 MYH1P12882 1939 aa18.29■□□□□ 0.52
PDLIM5-202ENST00000318007 POTECB2RU33 542 aa18.29■□□□□ 0.52
PDLIM5-202ENST00000318007 E7EWF7 191 aa18.29■□□□□ 0.52
PDLIM5-202ENST00000318007 CASTP20810 708 aaKnown RBP18.29■□□□□ 0.52
PDLIM5-202ENST00000318007 NOL8Q76FK4 1167 aaKnown RBP18.29■□□□□ 0.52
PDLIM5-202ENST00000318007 SH3BP5LQ7L8J4 393 aa18.29■□□□□ 0.52
PDLIM5-202ENST00000318007 AMOTL1Q8IY63 956 aa18.29■□□□□ 0.52
PDLIM5-202ENST00000318007 L3MBTL3Q96JM7 780 aaPredicted RBP18.29■□□□□ 0.52
PDLIM5-202ENST00000318007 NMRK2Q9NPI5 230 aa18.29■□□□□ 0.52
PDLIM5-202ENST00000318007 FOCADQ5VW36 1801 aa18.29■□□□□ 0.52
PDLIM5-202ENST00000318007 CSRNP1Q96S65 589 aa18.28■□□□□ 0.52
PDLIM5-202ENST00000318007 IDI2Q9BXS1 227 aa18.28■□□□□ 0.52
PDLIM5-202ENST00000318007 CNTNAP1P78357 1384 aa18.28■□□□□ 0.52
PDLIM5-202ENST00000318007 RASA3Q14644 834 aa18.28■□□□□ 0.52
PDLIM5-202ENST00000318007 ALX1Q15699 326 aa18.28■□□□□ 0.52
PDLIM5-202ENST00000318007 C12orf60Q5U649 245 aa18.28■□□□□ 0.52
PDLIM5-202ENST00000318007 LARP6Q9BRS8 491 aaKnown RBP18.28■□□□□ 0.52
PDLIM5-202ENST00000318007 LRRC2Q9BYS8 371 aa18.28■□□□□ 0.52
PDLIM5-202ENST00000318007 FZD1Q9UP38 647 aa18.28■□□□□ 0.52
PDLIM5-202ENST00000318007 CLEC11AQ9Y240 323 aa18.28■□□□□ 0.52
PDLIM5-202ENST00000318007 RBM19Q9Y4C8 960 aaKnown RBP18.28■□□□□ 0.52
PDLIM5-202ENST00000318007 DDX60LQ5H9U9 1706 aaKnown RBP18.27■□□□□ 0.52
PDLIM5-202ENST00000318007 B4E1Z4 1266 aa18.27■□□□□ 0.52
PDLIM5-202ENST00000318007 GIMAP6Q6P9H5 292 aa18.27■□□□□ 0.52
PDLIM5-202ENST00000318007 MIGA2Q7L4E1 593 aa18.27■□□□□ 0.52
PDLIM5-202ENST00000318007 TAF1DQ9H5J8 278 aaPredicted RBP18.27■□□□□ 0.52
PDLIM5-202ENST00000318007 LAMB1P07942 1786 aa18.27■□□□□ 0.51
PDLIM5-202ENST00000318007 RPAP1Q9BWH6 1393 aaPredicted RBP18.26■□□□□ 0.51
PDLIM5-202ENST00000318007 MFSD6Q6ZSS7 791 aa18.26■□□□□ 0.51
PDLIM5-202ENST00000318007 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.26■□□□□ 0.51
PDLIM5-202ENST00000318007 ZMYM6O95789 1325 aa18.26■□□□□ 0.51
PDLIM5-202ENST00000318007 IQCA1LA6NCM1 817 aa18.26■□□□□ 0.51
PDLIM5-202ENST00000318007 ADM5C9JUS6 153 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms