RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 CYP2D6P10635 497 aa21.75■■□□□ 1.07
HMGA1-201ENST00000311487 MFAP1P55081 439 aaKnown RBP21.75■■□□□ 1.07
HMGA1-201ENST00000311487 DCP1AQ9NPI6 582 aaPredicted RBP21.75■■□□□ 1.07
HMGA1-201ENST00000311487 PLCG2P16885 1265 aa21.74■■□□□ 1.07
HMGA1-201ENST00000311487 RASA3Q14644 834 aa21.74■■□□□ 1.07
HMGA1-201ENST00000311487 USP48Q86UV5 1035 aa21.74■■□□□ 1.07
HMGA1-201ENST00000311487 ZSCAN29Q8IWY8 852 aaPredicted RBP21.74■■□□□ 1.07
HMGA1-201ENST00000311487 DCPSQ96C86 337 aaKnown RBP21.74■■□□□ 1.07
HMGA1-201ENST00000311487 GLIS2Q9BZE0 524 aaPredicted RBP21.74■■□□□ 1.07
HMGA1-201ENST00000311487 MCM9Q9NXL9 1143 aa21.74■■□□□ 1.07
HMGA1-201ENST00000311487 FZD1Q9UP38 647 aa21.74■■□□□ 1.07
HMGA1-201ENST00000311487 CNTNAP1P78357 1384 aa21.74■■□□□ 1.07
HMGA1-201ENST00000311487 PATL2C9JE40 543 aaKnown RBP21.74■■□□□ 1.07
HMGA1-201ENST00000311487 DEFB129Q9H1M3 183 aa21.74■■□□□ 1.07
HMGA1-201ENST00000311487 DDTLA6NHG4 134 aaPredicted RBP21.73■■□□□ 1.07
HMGA1-201ENST00000311487 TDO2P48775 406 aa21.73■■□□□ 1.07
HMGA1-201ENST00000311487 MMP14P50281 582 aa21.73■■□□□ 1.07
HMGA1-201ENST00000311487 KRT26Q7Z3Y9 468 aa21.73■■□□□ 1.07
HMGA1-201ENST00000311487 IFNL3Q8IZI9 196 aa21.73■■□□□ 1.07
HMGA1-201ENST00000311487 TRAF5O00463 557 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 HAND2P61296 217 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 KIAA1211Q6ZU35 1233 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 SH3BP5LQ7L8J4 393 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 BAZ2AQ9UIF9 1905 aaKnown RBP21.72■■□□□ 1.07
HMGA1-201ENST00000311487 CDK5RAP2Q96SN8 1893 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 ECM29Q5VYK3 1845 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 MINDY4BA8MYZ0 360 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 USP17L12C9JPN9 530 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 USP17L21D6R901 530 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 IGSF3O75054 1194 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 FGAP02671 866 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 IDI2Q9BXS1 227 aa21.72■■□□□ 1.07
HMGA1-201ENST00000311487 LSG1Q9H089 658 aaKnown RBP21.72■■□□□ 1.07
HMGA1-201ENST00000311487 FAM196BA6NMK8 535 aa21.71■■□□□ 1.07
HMGA1-201ENST00000311487 KIF3CO14782 793 aa21.71■■□□□ 1.07
HMGA1-201ENST00000311487 PLCD1P51178 756 aa21.71■■□□□ 1.07
HMGA1-201ENST00000311487 TMED8Q6PL24 325 aaPredicted RBP21.71■■□□□ 1.07
HMGA1-201ENST00000311487 TICAM2Q86XR7 235 aa21.71■■□□□ 1.07
HMGA1-201ENST00000311487 OSBPL5Q9H0X9 879 aaPredicted RBP21.71■■□□□ 1.07
HMGA1-201ENST00000311487 MKRN1Q9UHC7 482 aaKnown RBP21.71■■□□□ 1.07
HMGA1-201ENST00000311487 ANP32AP39687 249 aaKnown RBP21.7■■□□□ 1.07
HMGA1-201ENST00000311487 PRKG1Q13976 671 aa21.7■■□□□ 1.07
HMGA1-201ENST00000311487 CTR9Q6PD62 1173 aa21.7■■□□□ 1.07
HMGA1-201ENST00000311487 MIGA2Q7L4E1 593 aa21.7■■□□□ 1.07
HMGA1-201ENST00000311487 SULF1Q8IWU6 871 aa21.7■■□□□ 1.07
HMGA1-201ENST00000311487 NAPBQ9H115 298 aa21.7■■□□□ 1.07
HMGA1-201ENST00000311487 INCENPQ9NQS7 918 aa21.7■■□□□ 1.07
HMGA1-201ENST00000311487 RAD50Q92878 1312 aa21.7■■□□□ 1.06
HMGA1-201ENST00000311487 POLR3DP05423 398 aaPredicted RBP21.7■■□□□ 1.06
HMGA1-201ENST00000311487 GNAT2P19087 354 aa21.7■■□□□ 1.06
HMGA1-201ENST00000311487 NBPF12Q5TAG4 269 aaPredicted RBP21.69■■□□□ 1.06
HMGA1-201ENST00000311487 ATP8A2Q9NTI2 1148 aa21.69■■□□□ 1.06
HMGA1-201ENST00000311487 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.69■■□□□ 1.06
HMGA1-201ENST00000311487 LDHDQ86WU2 507 aa21.68■■□□□ 1.06
HMGA1-201ENST00000311487 APOBEC3FQ8IUX4 373 aaKnown RBP21.68■■□□□ 1.06
HMGA1-201ENST00000311487 DYNLL2Q96FJ2 89 aa21.68■■□□□ 1.06
HMGA1-201ENST00000311487 CSRNP1Q96S65 589 aa21.68■■□□□ 1.06
HMGA1-201ENST00000311487 ZNF408Q9H9D4 720 aa21.68■■□□□ 1.06
HMGA1-201ENST00000311487 TAF6LQ9Y6J9 622 aa21.68■■□□□ 1.06
HMGA1-201ENST00000311487 CTDSPL2Q05D32 466 aa21.68■■□□□ 1.06
HMGA1-201ENST00000311487 ZC3H15Q8WU90 426 aaKnown RBP21.68■■□□□ 1.06
HMGA1-201ENST00000311487 FAM151AQ8WW52 585 aa21.68■■□□□ 1.06
HMGA1-201ENST00000311487 DDRGK1Q96HY6 314 aa21.68■■□□□ 1.06
HMGA1-201ENST00000311487 NACAP1Q9BZK3 213 aa21.68■■□□□ 1.06
HMGA1-201ENST00000311487 TNNI2P48788 182 aa21.67■■□□□ 1.06
HMGA1-201ENST00000311487 CERS3Q8IU89 383 aa21.67■■□□□ 1.06
HMGA1-201ENST00000311487 TEPSINQ96N21 525 aa21.67■■□□□ 1.06
HMGA1-201ENST00000311487 PGAP2Q9UHJ9 254 aa21.67■■□□□ 1.06
HMGA1-201ENST00000311487 RBM8AQ9Y5S9 174 aaKnown RBP21.67■■□□□ 1.06
HMGA1-201ENST00000311487 TNFAIP1Q13829 316 aa21.67■■□□□ 1.06
HMGA1-201ENST00000311487 SLC44A5Q8NCS7 719 aa21.67■■□□□ 1.06
HMGA1-201ENST00000311487 MAP4K1Q92918 833 aa21.67■■□□□ 1.06
HMGA1-201ENST00000311487 ENTPD3O75355 529 aa21.66■■□□□ 1.06
HMGA1-201ENST00000311487 DSCC1Q9BVC3 393 aa21.66■■□□□ 1.06
HMGA1-201ENST00000311487 CDC37L1Q7L3B6 337 aa21.65■■□□□ 1.06
HMGA1-201ENST00000311487 FAM83AQ86UY5 434 aa21.65■■□□□ 1.06
HMGA1-201ENST00000311487 PRDM1O75626 825 aa21.65■■□□□ 1.06
HMGA1-201ENST00000311487 REC8O95072 547 aa21.65■■□□□ 1.06
HMGA1-201ENST00000311487 FKBP1CQ5VVH2 108 aa21.65■■□□□ 1.06
HMGA1-201ENST00000311487 TACC3Q9Y6A5 838 aa21.65■■□□□ 1.06
HMGA1-201ENST00000311487 MYH1P12882 1939 aa21.65■■□□□ 1.06
HMGA1-201ENST00000311487 FOCADQ5VW36 1801 aa21.64■■□□□ 1.06
HMGA1-201ENST00000311487 NAV1Q8NEY1 1877 aa21.64■■□□□ 1.05
HMGA1-201ENST00000311487 CHADLQ6NUI6 762 aa21.64■■□□□ 1.05
HMGA1-201ENST00000311487 CDCA5Q96FF9 252 aa21.64■■□□□ 1.05
HMGA1-201ENST00000311487 USP26Q9BXU7 913 aa21.64■■□□□ 1.05
HMGA1-201ENST00000311487 NBPF3Q9H094 633 aa21.64■■□□□ 1.05
HMGA1-201ENST00000311487 PITPNM2Q9BZ72 1349 aa21.64■■□□□ 1.05
HMGA1-201ENST00000311487 PPARAQ07869 468 aa21.63■■□□□ 1.05
HMGA1-201ENST00000311487 C12orf60Q5U649 245 aa21.63■■□□□ 1.05
HMGA1-201ENST00000311487 MOB2Q70IA6 237 aa21.63■■□□□ 1.05
HMGA1-201ENST00000311487 NKX2-3Q8TAU0 364 aa21.63■■□□□ 1.05
HMGA1-201ENST00000311487 ZNF213O14771 459 aa21.62■■□□□ 1.05
HMGA1-201ENST00000311487 CYP21A2P08686 494 aa21.62■■□□□ 1.05
HMGA1-201ENST00000311487 SHROOM1Q2M3G4 852 aaPredicted RBP21.62■■□□□ 1.05
HMGA1-201ENST00000311487 TBC1D10CQ8IV04 446 aa21.62■■□□□ 1.05
HMGA1-201ENST00000311487 CRACR2BQ8N4Y2 399 aaPredicted RBP21.62■■□□□ 1.05
HMGA1-201ENST00000311487 IPO9Q96P70 1041 aaKnown RBP21.62■■□□□ 1.05
HMGA1-201ENST00000311487 ARPP21Q9UBL0 812 aaPredicted RBP21.62■■□□□ 1.05
HMGA1-201ENST00000311487 COL9A3Q14050 684 aaPredicted RBP21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms