RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 TRIM22Q8IYM9 498 aa13.37□□□□□ -0.27
PTPN2-201ENST00000309660 ZNF592Q92610 1267 aa13.37□□□□□ -0.27
PTPN2-201ENST00000309660 NGLY1Q96IV0 654 aa13.37□□□□□ -0.27
PTPN2-201ENST00000309660 GNL3LQ9NVN8 582 aaKnown RBP13.37□□□□□ -0.27
PTPN2-201ENST00000309660 NUP98P52948 1817 aa13.37□□□□□ -0.27
PTPN2-201ENST00000309660 MAGEB6P1A0A0J9YX57 407 aa13.36□□□□□ -0.27
PTPN2-201ENST00000309660 SYKP43405 635 aa13.36□□□□□ -0.27
PTPN2-201ENST00000309660 SAFBQ15424 915 aaKnown RBP eCLIP13.36□□□□□ -0.27
PTPN2-201ENST00000309660 CACTINQ8WUQ7 758 aaKnown RBP13.36□□□□□ -0.27
PTPN2-201ENST00000309660 CELF1Q92879 486 aaKnown RBP13.36□□□□□ -0.27
PTPN2-201ENST00000309660 CNNM2Q9H8M5 875 aa13.36□□□□□ -0.27
PTPN2-201ENST00000309660 KIAA1468Q9P260 1216 aa13.36□□□□□ -0.27
PTPN2-201ENST00000309660 SRP68Q9UHB9 627 aaKnown RBP13.36□□□□□ -0.27
PTPN2-201ENST00000309660 SLIT2O94813 1529 aa13.36□□□□□ -0.27
PTPN2-201ENST00000309660 AK7Q96M32 723 aa13.36□□□□□ -0.27
PTPN2-201ENST00000309660 AKAP11Q9UKA4 1901 aa13.36□□□□□ -0.27
PTPN2-201ENST00000309660 NHSL1Q5SYE7 1610 aa13.36□□□□□ -0.27
PTPN2-201ENST00000309660 MROH7-TTC4A0A0A0MT08 1334 aa13.36□□□□□ -0.27
PTPN2-201ENST00000309660 PPARAQ07869 468 aa13.36□□□□□ -0.27
PTPN2-201ENST00000309660 LINC00116Q8NCU8 138 aa13.36□□□□□ -0.27
PTPN2-201ENST00000309660 FAM217BQ9NTX9 383 aaPredicted RBP13.36□□□□□ -0.27
PTPN2-201ENST00000309660 A0A1W2PQ27 194 aa13.35□□□□□ -0.27
PTPN2-201ENST00000309660 A0A1W2PQ64 194 aa13.35□□□□□ -0.27
PTPN2-201ENST00000309660 A0A1W2PQD8 194 aa13.35□□□□□ -0.27
PTPN2-201ENST00000309660 CAVIN2O95810 425 aa13.35□□□□□ -0.27
PTPN2-201ENST00000309660 HSP90AA4PQ58FG1 418 aa13.35□□□□□ -0.27
PTPN2-201ENST00000309660 DHX40Q8IX18 779 aaKnown RBP13.35□□□□□ -0.27
PTPN2-201ENST00000309660 WDR19Q8NEZ3 1342 aa13.35□□□□□ -0.27
PTPN2-201ENST00000309660 KLRK1P26718 216 aa13.35□□□□□ -0.27
PTPN2-201ENST00000309660 LMOD1P29536 600 aaPredicted RBP13.35□□□□□ -0.27
PTPN2-201ENST00000309660 SLC39A14Q15043 492 aa13.35□□□□□ -0.27
PTPN2-201ENST00000309660 DIS3L2Q8IYB7 885 aaKnown RBP13.35□□□□□ -0.27
PTPN2-201ENST00000309660 PDILTQ8N807 584 aa13.35□□□□□ -0.27
PTPN2-201ENST00000309660 RRP9O43818 475 aaKnown RBP13.34□□□□□ -0.27
PTPN2-201ENST00000309660 AKAP17AQ02040 695 aaKnown RBP13.34□□□□□ -0.27
PTPN2-201ENST00000309660 NR5A1Q13285 461 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 NTRK3Q16288 839 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 TPD52L1Q16890 204 aaPredicted RBP13.34□□□□□ -0.27
PTPN2-201ENST00000309660 JMYQ8N9B5 988 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 SMARCC1Q92922 1105 aaPredicted RBP13.34□□□□□ -0.27
PTPN2-201ENST00000309660 GNAT2P19087 354 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 AXDND1Q5T1B0 1012 aaPredicted RBP13.34□□□□□ -0.27
PTPN2-201ENST00000309660 TBC1D9BQ66K14 1250 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 NBPF5PQ86XG9 351 aaPredicted RBP13.34□□□□□ -0.27
PTPN2-201ENST00000309660 PNOCQ13519 176 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 ALX1Q15699 326 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 SGMS1Q86VZ5 419 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 TRMT1Q9NXH9 659 aaKnown RBP13.34□□□□□ -0.27
PTPN2-201ENST00000309660 MTMR7Q9Y216 660 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 THRAP3Q9Y2W1 955 aaKnown RBP13.34□□□□□ -0.27
PTPN2-201ENST00000309660 ROBO1Q9Y6N7 1651 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 SPATA31A5Q5VU36 1347 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 SPATA31A7Q8IWB4 1347 aa13.34□□□□□ -0.27
PTPN2-201ENST00000309660 GNPATO15228 680 aa13.33□□□□□ -0.27
PTPN2-201ENST00000309660 LIFRP42702 1097 aa13.33□□□□□ -0.27
PTPN2-201ENST00000309660 TERF1P54274 439 aa13.33□□□□□ -0.27
PTPN2-201ENST00000309660 ZNF654Q8IZM8 581 aa13.33□□□□□ -0.27
PTPN2-201ENST00000309660 KLHL34Q8N239 644 aa13.33□□□□□ -0.27
PTPN2-201ENST00000309660 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.33□□□□□ -0.27
PTPN2-201ENST00000309660 RNF41Q9H4P4 317 aaPredicted RBP13.33□□□□□ -0.27
PTPN2-201ENST00000309660 COL14A1Q05707 1796 aaKnown RBP13.33□□□□□ -0.28
PTPN2-201ENST00000309660 DOT1LQ8TEK3 1739 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.33□□□□□ -0.28
PTPN2-201ENST00000309660 ATRNO75882 1429 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 TNKSO95271 1327 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 CMA1P23946 247 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 MINPP1Q9UNW1 487 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 MYH3P11055 1940 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 PTPN21Q16825 1174 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 SHC4Q6S5L8 630 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 CNNM3Q8NE01 707 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 ESR2Q92731 530 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 SPTLC3Q9NUV7 552 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 AATFQ9NY61 560 aaKnown RBP eCLIP13.33□□□□□ -0.28
PTPN2-201ENST00000309660 IFNKQ9P0W0 207 aa13.33□□□□□ -0.28
PTPN2-201ENST00000309660 EVX2Q03828 476 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 SETDB2Q96T68 719 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 ZPR1O75312 459 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.32□□□□□ -0.28
PTPN2-201ENST00000309660 FANCBQ8NB91 859 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 STAG1Q8WVM7 1258 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 DYNC1I1O14576 645 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 FMNL1O95466 1100 aaPredicted RBP13.32□□□□□ -0.28
PTPN2-201ENST00000309660 SKILP12757 684 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 NOSTRINQ8IVI9 506 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 MYRIPQ8NFW9 859 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 NLRP3Q96P20 1036 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 CABP5Q9NP86 173 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 VPS54Q9P1Q0 977 aa13.32□□□□□ -0.28
PTPN2-201ENST00000309660 MYH7P12883 1935 aa13.31□□□□□ -0.28
PTPN2-201ENST00000309660 USP17L12C9JPN9 530 aa13.31□□□□□ -0.28
PTPN2-201ENST00000309660 USP17L21D6R901 530 aa13.31□□□□□ -0.28
PTPN2-201ENST00000309660 IFNAR1P17181 557 aa13.31□□□□□ -0.28
PTPN2-201ENST00000309660 TPM4P67936 248 aa13.31□□□□□ -0.28
PTPN2-201ENST00000309660 TMC6Q7Z403 805 aa13.31□□□□□ -0.28
PTPN2-201ENST00000309660 OXER1Q8TDS5 423 aa13.31□□□□□ -0.28
PTPN2-201ENST00000309660 WASF1Q92558 559 aa13.31□□□□□ -0.28
PTPN2-201ENST00000309660 FAM84BQ96KN1 310 aaPredicted RBP13.31□□□□□ -0.28
PTPN2-201ENST00000309660 RIOK3O14730 519 aaKnown RBP13.31□□□□□ -0.28
PTPN2-201ENST00000309660 TNNT1P13805 278 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms