RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 CALCOCO2Q13137 446 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 SLFN12Q8IYM2 578 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 MRFAP1L1Q96HT8 127 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 FAM160A1Q05DH4 1040 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 RCSD1Q6JBY9 416 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 BZW1Q7L1Q6 419 aaKnown RBP4.5□□□□□ -1.69
USH2A-201ENST00000307340 OGFOD1Q8N543 542 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 METTL14Q9HCE5 456 aaKnown RBP4.5□□□□□ -1.69
USH2A-201ENST00000307340 GCFC2P16383 781 aaKnown RBP4.5□□□□□ -1.69
USH2A-201ENST00000307340 NR1H3Q13133 447 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 MRPS27Q92552 414 aaKnown RBP4.5□□□□□ -1.69
USH2A-201ENST00000307340 FAM89AQ96GI7 184 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 SCLT1Q96NL6 688 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 SMARCAL1Q9NZC9 954 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 KNDC1Q76NI1 1749 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 GFAPP14136 432 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 FRMD4BQ9Y2L6 1034 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 CHD4Q14839 1912 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 SLFNL1Q499Z3 407 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 ZNF804AQ7Z570 1209 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 SPDYE3A6NKU9 549 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 CABP1Q9NZU7 370 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 LRRFIP2Q9Y608 721 aaKnown RBP4.5□□□□□ -1.69
USH2A-201ENST00000307340 METAP2P50579 478 aaKnown RBP eCLIP4.5□□□□□ -1.69
USH2A-201ENST00000307340 TNFAIP1Q13829 316 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 ZNF530Q6P9A1 599 aaPredicted RBP4.5□□□□□ -1.69
USH2A-201ENST00000307340 CCDC144CPQ8IYA2 1237 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 SULT6B1Q6IMI4 303 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 WDR66Q8TBY9 1149 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 IKBKBO14920 756 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 FDX1P10109 184 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 ERCC5P28715 1186 aaPredicted RBP4.5□□□□□ -1.69
USH2A-201ENST00000307340 MTA1Q13330 715 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 APBB2Q92870 758 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 TRIM62Q9BVG3 475 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 DRC3Q9H069 523 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.5□□□□□ -1.69
USH2A-201ENST00000307340 MPHOSPH10O00566 681 aaKnown RBP4.5□□□□□ -1.69
USH2A-201ENST00000307340 SKILP12757 684 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 P4HA1P13674 534 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 ZSCAN20P17040 1043 aaPredicted RBP4.5□□□□□ -1.69
USH2A-201ENST00000307340 GSDMAQ96QA5 445 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 TXNDC16Q9P2K2 825 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 IFT172Q9UG01 1749 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 OVOS2A0A0J9YW53 1432 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 OVOS2Q6IE36 1432 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 GIMAP6Q6P9H5 292 aa4.5□□□□□ -1.69
USH2A-201ENST00000307340 FNBP4Q8N3X1 1017 aaPredicted RBP4.5□□□□□ -1.69
USH2A-201ENST00000307340 KDRP35968 1356 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 MUM1L1Q5H9M0 696 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 DENND2AQ9ULE3 1009 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 MYH7P12883 1935 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 ZFYVE27Q5T4F4 411 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 CPSF2Q9P2I0 782 aaKnown RBP4.49□□□□□ -1.69
USH2A-201ENST00000307340 LUC7L2Q9Y383 392 aaKnown RBP4.49□□□□□ -1.69
USH2A-201ENST00000307340 FIBPO43427 364 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 CWC27Q6UX04 472 aaKnown RBP4.49□□□□□ -1.69
USH2A-201ENST00000307340 TMCO5AQ8N6Q1 288 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 BPIFA3Q9BQP9 254 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 CNPY3Q9BT09 278 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 TRPV6Q9H1D0 765 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 CNOT10Q9H9A5 744 aaKnown RBP4.49□□□□□ -1.69
USH2A-201ENST00000307340 TNNI2P48788 182 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 HACE1Q8IYU2 909 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 KDM2BQ8NHM5 1336 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 CFAP221Q4G0U5 840 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 PPP1R21Q6ZMI0 780 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 ANKRD13DQ6ZTN6 518 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 MKNK2Q9HBH9 465 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 SEPT6Q14141 434 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 IFIT1BQ5T764 474 aaKnown RBP4.49□□□□□ -1.69
USH2A-201ENST00000307340 CCDC170Q8IYT3 715 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 VCX3AQ9NNX9 186 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 ZBTB40Q9NUA8 1239 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 CLGNO14967 610 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 DDX5P17844 614 aaKnown RBP4.49□□□□□ -1.69
USH2A-201ENST00000307340 SLC9C1Q4G0N8 1177 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 ARL6IP4Q66PJ3 421 aaKnown RBP4.49□□□□□ -1.69
USH2A-201ENST00000307340 MYCBPQ99417 103 aaPredicted RBP4.49□□□□□ -1.69
USH2A-201ENST00000307340 CABP5Q9NP86 173 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 ERVV-2B6SEH9 535 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 NFKBIAP25963 317 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 MYH11P35749 1972 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 NUTM2BA6NNL0 878 aaPredicted RBP4.49□□□□□ -1.69
USH2A-201ENST00000307340 NUTM2EB1AL46 878 aaPredicted RBP4.49□□□□□ -1.69
USH2A-201ENST00000307340 ATP5HO75947 161 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 CTNNA2P26232 953 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 CCDC40Q4G0X9 1142 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 EPS15L1Q9UBC2 864 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 ERBB3P21860 1342 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 MORC4Q8TE76 937 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 MOV10L1Q9BXT6 1211 aaKnown RBP4.49□□□□□ -1.69
USH2A-201ENST00000307340 NDE1Q9NXR1 346 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 KDM4AO75164 1064 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 PPFIA4O75335 1185 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 BPIFB4P59827 614 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 CCDC42Q96M95 316 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 PRDM11Q9NQV5 511 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 TRIM75PA6NK02 468 aa4.49□□□□□ -1.69
USH2A-201ENST00000307340 CCDC169A6NNP5 214 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms