RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 CFAP45Q9UL16 551 aa12.02□□□□□ -0.49
UPF3B-201ENST00000276201 LAMA4Q16363 1823 aa12.02□□□□□ -0.49
UPF3B-201ENST00000276201 RIMBP2O15034 1052 aa12.01□□□□□ -0.49
UPF3B-201ENST00000276201 ATP2B4P23634 1241 aa12.01□□□□□ -0.49
UPF3B-201ENST00000276201 CHRNDQ07001 517 aa12.01□□□□□ -0.49
UPF3B-201ENST00000276201 TOB2Q14106 344 aaPredicted RBP12.01□□□□□ -0.49
UPF3B-201ENST00000276201 EYA3Q99504 573 aa12.01□□□□□ -0.49
UPF3B-201ENST00000276201 LLPHQ9BRT6 129 aaKnown RBP12.01□□□□□ -0.49
UPF3B-201ENST00000276201 RRAGCQ9HB90 399 aa12.01□□□□□ -0.49
UPF3B-201ENST00000276201 ZNRF3Q9ULT6 936 aa12.01□□□□□ -0.49
UPF3B-201ENST00000276201 POTECB2RU33 542 aa12.01□□□□□ -0.49
UPF3B-201ENST00000276201 LDHAL6AQ6ZMR3 332 aa12.01□□□□□ -0.49
UPF3B-201ENST00000276201 NECAB1Q8N987 351 aa12.01□□□□□ -0.49
UPF3B-201ENST00000276201 PUS3Q9BZE2 481 aaKnown RBP12.01□□□□□ -0.49
UPF3B-201ENST00000276201 ANKRD2Q9GZV1 360 aa12.01□□□□□ -0.49
UPF3B-201ENST00000276201 OSBPL5Q9H0X9 879 aaPredicted RBP12.01□□□□□ -0.49
UPF3B-201ENST00000276201 YDJCA8MPS7 323 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 RFX5P48382 616 aaPredicted RBP12□□□□□ -0.49
UPF3B-201ENST00000276201 EIF6P56537 245 aaKnown RBP12□□□□□ -0.49
UPF3B-201ENST00000276201 PTPN14Q15678 1187 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 CCDC144BQ3MJ40 725 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 ZNF771Q7L3S4 317 aaPredicted RBP12□□□□□ -0.49
UPF3B-201ENST00000276201 CCDC144CPQ8IYA2 1237 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 HELBQ8NG08 1087 aaPredicted RBP12□□□□□ -0.49
UPF3B-201ENST00000276201 L3MBTL3Q96JM7 780 aaPredicted RBP12□□□□□ -0.49
UPF3B-201ENST00000276201 L2HGDHQ9H9P8 463 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 RCOR1Q9UKL0 485 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 IFIT2P09913 472 aaKnown RBP12□□□□□ -0.49
UPF3B-201ENST00000276201 CCZ1BP86790 482 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 CCZ1P86791 482 aaPredicted RBP12□□□□□ -0.49
UPF3B-201ENST00000276201 CAMK4Q16566 473 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 DOK7Q18PE1 504 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 NAA16Q6N069 864 aaPredicted RBP12□□□□□ -0.49
UPF3B-201ENST00000276201 CKAP2LQ8IYA6 745 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 KLHDC4Q8TBB5 520 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 GTF3C6Q969F1 213 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 LARP6Q9BRS8 491 aaKnown RBP12□□□□□ -0.49
UPF3B-201ENST00000276201 ZC3H12CQ9C0D7 883 aaKnown RBP12□□□□□ -0.49
UPF3B-201ENST00000276201 DBNDD1Q9H9R9 158 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 CNNM1Q9NRU3 951 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 LEMD3Q9Y2U8 911 aa12□□□□□ -0.49
UPF3B-201ENST00000276201 GOLGA6L19H0YKK7 550 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 SNAP23O00161 211 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 NR1I2O75469 434 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 TAF5LO75529 589 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 SLU7O95391 586 aaKnown RBP11.99□□□□□ -0.49
UPF3B-201ENST00000276201 CXCL9Q07325 125 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 GPC2Q8N158 579 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 CCAR2Q8N163 923 aaKnown RBP11.99□□□□□ -0.49
UPF3B-201ENST00000276201 SMARCC2Q8TAQ2 1214 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 BPIFA3Q9BQP9 254 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 DNAJC25Q9H1X3 360 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 ZNF804BA4D1E1 1349 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 ECE2O60344 883 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 KLRK1P26718 216 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 NMIQ13287 307 aaPredicted RBP11.99□□□□□ -0.49
UPF3B-201ENST00000276201 CHMP4CQ96CF2 233 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 ANO10Q9NW15 660 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 RIPOR2Q9Y4F9 1068 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 GJA3Q9Y6H8 435 aa11.99□□□□□ -0.49
UPF3B-201ENST00000276201 RAD17O75943 681 aa11.98□□□□□ -0.49
UPF3B-201ENST00000276201 VEGFAP15692 232 aaPredicted RBP11.98□□□□□ -0.49
UPF3B-201ENST00000276201 SLC20A2Q08357 652 aa11.98□□□□□ -0.49
UPF3B-201ENST00000276201 KMT5BQ4FZB7 885 aa11.98□□□□□ -0.49
UPF3B-201ENST00000276201 LRRC24Q50LG9 513 aa11.98□□□□□ -0.49
UPF3B-201ENST00000276201 TXNRD3Q86VQ6 643 aa11.98□□□□□ -0.49
UPF3B-201ENST00000276201 RGS22Q8NE09 1264 aa11.98□□□□□ -0.49
UPF3B-201ENST00000276201 SCN9AQ15858 1988 aa11.98□□□□□ -0.49
UPF3B-201ENST00000276201 IRS2Q9Y4H2 1338 aa11.98□□□□□ -0.49
UPF3B-201ENST00000276201 H2AFXP16104 143 aaPredicted RBP11.98□□□□□ -0.49
UPF3B-201ENST00000276201 PTPN12Q05209 780 aaKnown RBP11.98□□□□□ -0.49
UPF3B-201ENST00000276201 OS9Q13438 667 aaPredicted RBP11.98□□□□□ -0.49
UPF3B-201ENST00000276201 BICD2Q8TD16 824 aa11.98□□□□□ -0.49
UPF3B-201ENST00000276201 KCNQ5Q9NR82 932 aa11.98□□□□□ -0.49
UPF3B-201ENST00000276201 KCNA4P22459 653 aa11.97□□□□□ -0.49
UPF3B-201ENST00000276201 ADD1P35611 737 aaKnown RBP11.97□□□□□ -0.49
UPF3B-201ENST00000276201 KCNJ4P48050 445 aa11.97□□□□□ -0.49
UPF3B-201ENST00000276201 CIAPIN1Q6FI81 312 aa11.97□□□□□ -0.49
UPF3B-201ENST00000276201 CCDC150Q8NCX0 1101 aa11.97□□□□□ -0.49
UPF3B-201ENST00000276201 ZNF215Q9UL58 517 aaPredicted RBP11.97□□□□□ -0.49
UPF3B-201ENST00000276201 SCN4AP35499 1836 aa11.97□□□□□ -0.49
UPF3B-201ENST00000276201 SKILP12757 684 aa11.97□□□□□ -0.49
UPF3B-201ENST00000276201 BMS1Q14692 1282 aaKnown RBP11.97□□□□□ -0.49
UPF3B-201ENST00000276201 FERMT3Q86UX7 667 aa11.97□□□□□ -0.49
UPF3B-201ENST00000276201 ENGASEQ8NFI3 743 aa11.97□□□□□ -0.49
UPF3B-201ENST00000276201 MROH5Q6ZUA9 1318 aa11.96□□□□□ -0.49
UPF3B-201ENST00000276201 CCDC69A6NI79 296 aa11.96□□□□□ -0.49
UPF3B-201ENST00000276201 ATP8B1O43520 1251 aa11.96□□□□□ -0.49
UPF3B-201ENST00000276201 SCNN1DP51172 638 aa11.96□□□□□ -0.49
UPF3B-201ENST00000276201 TNIP1Q15025 636 aa11.96□□□□□ -0.49
UPF3B-201ENST00000276201 DHX40Q8IX18 779 aaKnown RBP11.96□□□□□ -0.49
UPF3B-201ENST00000276201 NAT10Q9H0A0 1025 aaKnown RBP11.96□□□□□ -0.49
UPF3B-201ENST00000276201 CALCOCO1Q9P1Z2 691 aa11.96□□□□□ -0.49
UPF3B-201ENST00000276201 IQCA1LA6NCM1 817 aa11.96□□□□□ -0.5
UPF3B-201ENST00000276201 G3V3G9 751 aa11.96□□□□□ -0.5
UPF3B-201ENST00000276201 EYA2O00167 538 aa11.96□□□□□ -0.5
UPF3B-201ENST00000276201 PSMD14O00487 310 aa11.96□□□□□ -0.5
UPF3B-201ENST00000276201 CCP110O43303 1012 aa11.96□□□□□ -0.5
UPF3B-201ENST00000276201 GMPSP49915 693 aaPredicted RBP11.96□□□□□ -0.5
UPF3B-201ENST00000276201 METTL24Q5JXM2 366 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms