RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 SUSD4Q5VX71 490 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 APPBP2Q92624 585 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 RXRBP28702 533 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 DDIT3P35638 169 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 SLC9C2Q5TAH2 1124 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 ATL3Q6DD88 541 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 NUP88Q99567 741 aaPredicted RBP13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 CARD6Q9BX69 1037 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 KLF18A0A0U1RQI7 1052 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 NR1I2O75469 434 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 RBM5P52756 815 aaKnown RBP eCLIP13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 RPS8P62241 208 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 APOBRQ0VD83 1088 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 LRRC8AQ8IWT6 810 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 VPS18Q9P253 973 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 IMPACTQ9P2X3 320 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 MRVI1Q9Y6F6 885 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 RGPD2P0DJD1 1756 aa13.16□□□□□ -0.3
CLSTN3-201ENST00000266546 HELBQ8NG08 1087 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 CSF1RP07333 972 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 RASEFQ8IZ41 740 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 CENPHQ9H3R5 247 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 CTAGE15A4D2H0 777 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 CCDC175P0C221 793 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 CTAGE8P0CG41 777 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 CTR9Q6PD62 1173 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 CCDC129Q6ZRS4 1044 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 DHX32Q7L7V1 743 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 CTAGE6Q86UF2 777 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 CTAGE4Q8IX94 777 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 ZBTB9Q96C00 473 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 PARP3Q9Y6F1 533 aa13.15□□□□□ -0.3
CLSTN3-201ENST00000266546 GSTO1P78417 241 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 UBE4AQ14139 1066 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 DZIP1Q86YF9 867 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 CCDC82Q8N4S0 544 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 RGPD5Q99666 1765 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 APBA3O96018 575 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 IARSP41252 1262 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 KARSQ15046 597 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 CEP112Q8N8E3 955 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 PUS3Q9BZE2 481 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 RNF216Q9NWF9 866 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 DISP2A7MBM2 1401 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 ABCC12Q96J65 1359 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 MINDY4BA8MYZ0 360 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 ZNF804AQ7Z570 1209 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 GPATCH11Q8N954 259 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 CACTINQ8WUQ7 758 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 MRFAP1L1Q96HT8 127 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 UBAC1Q9BSL1 405 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 DSCC1Q9BVC3 393 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 KDM3BQ7LBC6 1761 aa13.14□□□□□ -0.31
CLSTN3-201ENST00000266546 PHACTR2O75167 634 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 CHST3Q7LGC8 479 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 NCOA7Q8NI08 942 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 JAK2O60674 1132 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 CAMTA2O94983 1202 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 RFX5P48382 616 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 MYL5Q02045 173 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 SYCP1Q15431 976 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 MICU3Q86XE3 530 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 MARF1Q9Y4F3 1742 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 YEATS4O95619 227 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 NLGN1Q8N2Q7 840 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 TDRD7Q8NHU6 1098 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 PTH1RQ03431 593 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 PPP2R3AQ06190 1150 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 ITPK1Q13572 414 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 KAZALD1Q96I82 304 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 ZNF287Q9HBT7 754 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 ZSWIM6Q9HCJ5 1215 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 LZTFL1Q9NQ48 299 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 STK32BQ9NY57 414 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 PUF60Q9UHX1 559 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 TPCN1Q9ULQ1 816 aa13.13□□□□□ -0.31
CLSTN3-201ENST00000266546 GOLGA8AA7E2F4 631 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 INTS5Q6P9B9 1019 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 TMEM87AQ8NBN3 555 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 BAG1Q99933 345 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 TLR7Q9NYK1 1049 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 SCN11AQ9UI33 1791 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 TRIM37O94972 964 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 BAG3O95817 575 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 METAP2P50579 478 aaKnown RBP eCLIP13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 LUC7LQ9NQ29 371 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 MNAT1P51948 309 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 IRX3P78415 501 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 FANCCQ00597 558 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 NCBP1Q09161 790 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 TMC4Q7Z404 712 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 CCDC144CPQ8IYA2 1237 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 ALG1Q9BT22 464 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 CNNM2Q9H8M5 875 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 SPTLC3Q9NUV7 552 aa13.12□□□□□ -0.31
CLSTN3-201ENST00000266546 COL18A1P39060 1754 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 C6orf229H3BNL8 230 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 CYP7A1P22680 504 aa13.11□□□□□ -0.31
CLSTN3-201ENST00000266546 EPS15P42566 896 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms