RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 LUC7L2Q9Y383 392 aaKnown RBP21.45■■□□□ 1.02
UPF1-201ENST00000262803 FAM169AQ9Y6X4 670 aa21.45■■□□□ 1.02
UPF1-201ENST00000262803 ANAPC4Q9UJX5 808 aa21.45■■□□□ 1.02
UPF1-201ENST00000262803 CCNL1Q9UK58 526 aaPredicted RBP21.45■■□□□ 1.02
UPF1-201ENST00000262803 CCDC50Q8IVM0 306 aa21.45■■□□□ 1.02
UPF1-201ENST00000262803 FAM89AQ96GI7 184 aa21.45■■□□□ 1.02
UPF1-201ENST00000262803 MAK16Q9BXY0 300 aaKnown RBP21.45■■□□□ 1.02
UPF1-201ENST00000262803 ZMYND15Q9H091 742 aa21.45■■□□□ 1.02
UPF1-201ENST00000262803 B4E1Z4 1266 aa21.44■■□□□ 1.02
UPF1-201ENST00000262803 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.44■■□□□ 1.02
UPF1-201ENST00000262803 CFAP57Q96MR6 1250 aa21.44■■□□□ 1.02
UPF1-201ENST00000262803 UFL1O94874 794 aa21.44■■□□□ 1.02
UPF1-201ENST00000262803 IQCDQ96DY2 449 aa21.44■■□□□ 1.02
UPF1-201ENST00000262803 NCOA5Q9HCD5 579 aaKnown RBP21.44■■□□□ 1.02
UPF1-201ENST00000262803 CFAP58Q5T655 872 aa21.44■■□□□ 1.02
UPF1-201ENST00000262803 RRAGDQ9NQL2 400 aaPredicted RBP21.44■■□□□ 1.02
UPF1-201ENST00000262803 IVNS1ABPQ9Y6Y0 642 aa21.44■■□□□ 1.02
UPF1-201ENST00000262803 LIN9Q5TKA1 542 aa21.44■■□□□ 1.02
UPF1-201ENST00000262803 CAPZA3Q96KX2 299 aa21.44■■□□□ 1.02
UPF1-201ENST00000262803 CCDC94Q9BW85 323 aaPredicted RBP21.44■■□□□ 1.02
UPF1-201ENST00000262803 CLSTN2Q9H4D0 955 aa21.44■■□□□ 1.02
UPF1-201ENST00000262803 ADGRL2O95490 1459 aa21.44■■□□□ 1.02
UPF1-201ENST00000262803 CALCOCO2Q13137 446 aa21.43■■□□□ 1.02
UPF1-201ENST00000262803 ANO1Q5XXA6 986 aa21.43■■□□□ 1.02
UPF1-201ENST00000262803 BAG1Q99933 345 aaPredicted RBP21.43■■□□□ 1.02
UPF1-201ENST00000262803 FLAD1Q8NFF5 587 aa21.43■■□□□ 1.02
UPF1-201ENST00000262803 CCDC87Q9NVE4 849 aa21.43■■□□□ 1.02
UPF1-201ENST00000262803 VWA3AA6NCI4 1184 aa21.43■■□□□ 1.02
UPF1-201ENST00000262803 ZBED4O75132 1171 aa21.43■■□□□ 1.02
UPF1-201ENST00000262803 PLCB3Q01970 1234 aa21.43■■□□□ 1.02
UPF1-201ENST00000262803 CROCCP2Q86T23 111 aa21.43■■□□□ 1.02
UPF1-201ENST00000262803 GPHNQ9NQX3 736 aaPredicted RBP21.43■■□□□ 1.02
UPF1-201ENST00000262803 MROH5Q6ZUA9 1318 aa21.43■■□□□ 1.02
UPF1-201ENST00000262803 STRN3Q13033 797 aa21.43■■□□□ 1.02
UPF1-201ENST00000262803 GPR161Q8N6U8 529 aaKnown RBP21.43■■□□□ 1.02
UPF1-201ENST00000262803 KRT25Q7Z3Z0 450 aa21.42■■□□□ 1.02
UPF1-201ENST00000262803 PLIN2Q99541 437 aa21.42■■□□□ 1.02
UPF1-201ENST00000262803 MAP7D1Q3KQU3 841 aa21.42■■□□□ 1.02
UPF1-201ENST00000262803 RSPH14Q9UHP6 348 aa21.42■■□□□ 1.02
UPF1-201ENST00000262803 ZMYM3Q14202 1370 aa21.42■■□□□ 1.02
UPF1-201ENST00000262803 LGR6Q9HBX8 967 aa21.42■■□□□ 1.02
UPF1-201ENST00000262803 PTPRTO14522 1441 aa21.42■■□□□ 1.02
UPF1-201ENST00000262803 ARL1P40616 181 aaPredicted RBP21.42■■□□□ 1.02
UPF1-201ENST00000262803 LMBRD1Q9NUN5 540 aa21.42■■□□□ 1.02
UPF1-201ENST00000262803 UNC13AQ9UPW8 1703 aa21.42■■□□□ 1.02
UPF1-201ENST00000262803 CCDC110Q8TBZ0 833 aa21.42■■□□□ 1.02
UPF1-201ENST00000262803 APPBP2Q92624 585 aa21.42■■□□□ 1.02
UPF1-201ENST00000262803 KAT6BQ8WYB5 2073 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 MXRA7P84157 204 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 ZNF174Q15697 407 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 CCDC26Q8TAB7 109 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 NOD1Q9Y239 953 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 MAST1Q9Y2H9 1570 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 IBTKQ9P2D0 1353 aaPredicted RBP21.41■■□□□ 1.02
UPF1-201ENST00000262803 AKR1B15C9JRZ8 316 aaPredicted RBP21.41■■□□□ 1.02
UPF1-201ENST00000262803 VAV2P52735 878 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 LEO1Q8WVC0 666 aaPredicted RBP21.41■■□□□ 1.02
UPF1-201ENST00000262803 SUCLG2Q96I99 432 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 H0YIN7 160 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 STK10O94804 968 aaKnown RBP21.41■■□□□ 1.02
UPF1-201ENST00000262803 RHOXF2BP0C7M4 288 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 RHOXF2Q9BQY4 288 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 RIMBP2O15034 1052 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 HACE1Q8IYU2 909 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 PSMD1Q99460 953 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 SLC5A4Q9NY91 659 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 ODF2LQ9ULJ1 636 aa21.41■■□□□ 1.02
UPF1-201ENST00000262803 ANGEL1Q9UNK9 670 aaKnown RBP21.41■■□□□ 1.02
UPF1-201ENST00000262803 CAPN2P17655 700 aa21.4■■□□□ 1.02
UPF1-201ENST00000262803 ALDH1B1P30837 517 aa21.4■■□□□ 1.02
UPF1-201ENST00000262803 KBTBD3Q8NAB2 608 aa21.4■■□□□ 1.02
UPF1-201ENST00000262803 NUP58Q9BVL2 599 aa21.4■■□□□ 1.02
UPF1-201ENST00000262803 GADD45BO75293 160 aaPredicted RBP21.4■■□□□ 1.02
UPF1-201ENST00000262803 ATRIPQ8WXE1 791 aa21.4■■□□□ 1.02
UPF1-201ENST00000262803 FAM212AQ96EL1 285 aa21.4■■□□□ 1.02
UPF1-201ENST00000262803 KCNH3Q9ULD8 1083 aa21.4■■□□□ 1.02
UPF1-201ENST00000262803 CCT6AP40227 531 aaKnown RBP21.4■■□□□ 1.02
UPF1-201ENST00000262803 CCDC63Q8NA47 563 aa21.4■■□□□ 1.02
UPF1-201ENST00000262803 ATP2C2O75185 946 aa21.39■■□□□ 1.02
UPF1-201ENST00000262803 ITGA6P23229 1130 aa21.39■■□□□ 1.01
UPF1-201ENST00000262803 XAGE2Q96GT9 111 aa21.39■■□□□ 1.01
UPF1-201ENST00000262803 CBX8Q9HC52 389 aa21.39■■□□□ 1.01
UPF1-201ENST00000262803 BTG4Q9NY30 223 aa21.39■■□□□ 1.01
UPF1-201ENST00000262803 OTUD7BQ6GQQ9 843 aa21.39■■□□□ 1.01
UPF1-201ENST00000262803 LPIN2Q92539 896 aa21.39■■□□□ 1.01
UPF1-201ENST00000262803 GPAA1O43292 621 aa21.38■■□□□ 1.01
UPF1-201ENST00000262803 DTNBO60941 627 aa21.38■■□□□ 1.01
UPF1-201ENST00000262803 YWHAEP62258 255 aaKnown RBP21.38■■□□□ 1.01
UPF1-201ENST00000262803 PPP1R7Q15435 360 aa21.38■■□□□ 1.01
UPF1-201ENST00000262803 INF2Q27J81 1249 aa21.38■■□□□ 1.01
UPF1-201ENST00000262803 ERO1AQ96HE7 468 aa21.38■■□□□ 1.01
UPF1-201ENST00000262803 ZNF594Q96JF6 807 aaPredicted RBP21.38■■□□□ 1.01
UPF1-201ENST00000262803 JAG2Q9Y219 1238 aa21.38■■□□□ 1.01
UPF1-201ENST00000262803 DNM2P50570 870 aa21.38■■□□□ 1.01
UPF1-201ENST00000262803 CCDC6Q16204 474 aa21.38■■□□□ 1.01
UPF1-201ENST00000262803 BIN2Q9UBW5 565 aaPredicted RBP21.38■■□□□ 1.01
UPF1-201ENST00000262803 TRPC3Q13507 836 aa21.37■■□□□ 1.01
UPF1-201ENST00000262803 ZNF75DP51815 510 aa21.37■■□□□ 1.01
UPF1-201ENST00000262803 BIRC3Q13489 604 aa21.37■■□□□ 1.01
UPF1-201ENST00000262803 CCDC122Q5T0U0 273 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms