RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TPCN1Q9ULQ1 816 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 CACNA1FO60840 1977 aa13.41□□□□□ -0.26
VPS4A-201ENST00000254950 RPAP1Q9BWH6 1393 aaPredicted RBP13.4□□□□□ -0.26
VPS4A-201ENST00000254950 RGPD2P0DJD1 1756 aa13.4□□□□□ -0.26
VPS4A-201ENST00000254950 TFAP4Q01664 338 aa13.4□□□□□ -0.26
VPS4A-201ENST00000254950 GTF3C6Q969F1 213 aa13.4□□□□□ -0.26
VPS4A-201ENST00000254950 CD2BP2O95400 341 aaKnown RBP13.4□□□□□ -0.26
VPS4A-201ENST00000254950 PRDX5P30044 214 aa13.4□□□□□ -0.26
VPS4A-201ENST00000254950 UBE2HP62256 183 aa13.4□□□□□ -0.26
VPS4A-201ENST00000254950 OLFM4Q6UX06 510 aa13.4□□□□□ -0.26
VPS4A-201ENST00000254950 CCDC148Q8NFR7 591 aa13.4□□□□□ -0.26
VPS4A-201ENST00000254950 NASPP49321 788 aaPredicted RBP13.4□□□□□ -0.26
VPS4A-201ENST00000254950 DEFB132Q7Z7B7 95 aa13.4□□□□□ -0.26
VPS4A-201ENST00000254950 MED23Q9ULK4 1368 aa13.39□□□□□ -0.27
VPS4A-201ENST00000254950 C21orf2O43822 256 aa13.39□□□□□ -0.27
VPS4A-201ENST00000254950 DIXDC1Q155Q3 683 aa13.39□□□□□ -0.27
VPS4A-201ENST00000254950 RGPD5Q99666 1765 aa13.39□□□□□ -0.27
VPS4A-201ENST00000254950 DNM1Q05193 864 aaKnown RBP13.39□□□□□ -0.27
VPS4A-201ENST00000254950 TCP10Q12799 353 aa13.39□□□□□ -0.27
VPS4A-201ENST00000254950 SLC16A10Q8TF71 515 aa13.39□□□□□ -0.27
VPS4A-201ENST00000254950 CCDC43Q96MW1 224 aaKnown RBP13.39□□□□□ -0.27
VPS4A-201ENST00000254950 LTBP4Q8N2S1 1624 aa13.39□□□□□ -0.27
VPS4A-201ENST00000254950 KLHL40Q2TBA0 621 aa13.39□□□□□ -0.27
VPS4A-201ENST00000254950 CNPY2Q9Y2B0 182 aa13.39□□□□□ -0.27
VPS4A-201ENST00000254950 ATP6V0A2Q9Y487 856 aa13.39□□□□□ -0.27
VPS4A-201ENST00000254950 DALRD3Q5D0E6 543 aaKnown RBP13.38□□□□□ -0.27
VPS4A-201ENST00000254950 PODNQ7Z5L7 613 aa13.38□□□□□ -0.27
VPS4A-201ENST00000254950 MYL10Q9BUA6 226 aa13.38□□□□□ -0.27
VPS4A-201ENST00000254950 LRRC4BQ9NT99 713 aa13.38□□□□□ -0.27
VPS4A-201ENST00000254950 PFKFB2O60825 505 aa13.38□□□□□ -0.27
VPS4A-201ENST00000254950 MAP3K11Q16584 847 aa13.38□□□□□ -0.27
VPS4A-201ENST00000254950 GRIPAP1Q4V328 841 aa13.38□□□□□ -0.27
VPS4A-201ENST00000254950 CCDC183Q5T5S1 534 aa13.38□□□□□ -0.27
VPS4A-201ENST00000254950 PIM2Q9P1W9 311 aa13.38□□□□□ -0.27
VPS4A-201ENST00000254950 CALML3P27482 149 aa13.38□□□□□ -0.27
VPS4A-201ENST00000254950 FAM47AQ5JRC9 791 aa13.38□□□□□ -0.27
VPS4A-201ENST00000254950 JAK2O60674 1132 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 TRAF1Q13077 416 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 TTLL12Q14166 644 aaPredicted RBP13.37□□□□□ -0.27
VPS4A-201ENST00000254950 ZNF654Q8IZM8 581 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 TBC1D16Q8TBP0 767 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 TNKSO95271 1327 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 DEXIO95424 95 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 HEATR3Q7Z4Q2 680 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 BRAPQ7Z569 592 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 FSIP1Q8NA03 581 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 ANKRD20A12PQ8NF67 263 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 DDX19AQ9NUU7 478 aaKnown RBP13.37□□□□□ -0.27
VPS4A-201ENST00000254950 PARP1P09874 1014 aaKnown RBP13.37□□□□□ -0.27
VPS4A-201ENST00000254950 LMOD1P29536 600 aaPredicted RBP13.37□□□□□ -0.27
VPS4A-201ENST00000254950 ZNF76P36508 570 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 CUL4AQ13619 759 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 NHSL1Q5SYE7 1610 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 USP17L3A6NCW0 530 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 USP17L4A6NCW7 530 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 IGSF3O75054 1194 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 TPM3P06753 285 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 USP17L1Q7RTZ2 530 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 FBXO33Q7Z6M2 555 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 CCAR1Q8IX12 1150 aaKnown RBP13.37□□□□□ -0.27
VPS4A-201ENST00000254950 CUL5Q93034 780 aa13.37□□□□□ -0.27
VPS4A-201ENST00000254950 ZSCAN10Q96SZ4 725 aaPredicted RBP13.37□□□□□ -0.27
VPS4A-201ENST00000254950 SYCE3A1L190 88 aa13.36□□□□□ -0.27
VPS4A-201ENST00000254950 PES1O00541 588 aaKnown RBP13.36□□□□□ -0.27
VPS4A-201ENST00000254950 CHRNA5P30532 468 aa13.36□□□□□ -0.27
VPS4A-201ENST00000254950 GIMAP6Q6P9H5 292 aa13.36□□□□□ -0.27
VPS4A-201ENST00000254950 USP48Q86UV5 1035 aa13.36□□□□□ -0.27
VPS4A-201ENST00000254950 KCNG4Q8TDN1 519 aa13.36□□□□□ -0.27
VPS4A-201ENST00000254950 RRP36Q96EU6 259 aaKnown RBP13.36□□□□□ -0.27
VPS4A-201ENST00000254950 BMP15O95972 392 aa13.36□□□□□ -0.27
VPS4A-201ENST00000254950 FGFR2P21802 821 aa13.36□□□□□ -0.27
VPS4A-201ENST00000254950 NAPAP54920 295 aa13.36□□□□□ -0.27
VPS4A-201ENST00000254950 ALX1Q15699 326 aa13.36□□□□□ -0.27
VPS4A-201ENST00000254950 ONECUT3O60422 494 aaPredicted RBP13.35□□□□□ -0.27
VPS4A-201ENST00000254950 PDIA3P30101 505 aaKnown RBP13.35□□□□□ -0.27
VPS4A-201ENST00000254950 DTNBO60941 627 aa13.35□□□□□ -0.27
VPS4A-201ENST00000254950 BRD1O95696 1058 aa13.35□□□□□ -0.27
VPS4A-201ENST00000254950 TNIP1Q15025 636 aa13.35□□□□□ -0.27
VPS4A-201ENST00000254950 C3orf67Q6ZVT6 689 aa13.35□□□□□ -0.27
VPS4A-201ENST00000254950 BCL2L12Q9HB09 334 aa13.35□□□□□ -0.27
VPS4A-201ENST00000254950 TPM2P07951 284 aa13.35□□□□□ -0.27
VPS4A-201ENST00000254950 ATL3Q6DD88 541 aa13.35□□□□□ -0.27
VPS4A-201ENST00000254950 PHKBQ93100 1093 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 V9GY48 417 aaPredicted RBP13.34□□□□□ -0.27
VPS4A-201ENST00000254950 H7C1D1 291 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 CTAGE5O15320 804 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 RAD17O75943 681 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 ARHGAP27Q6ZUM4 889 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 CCDC125Q86Z20 511 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 CEP57L1Q8IYX8 460 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 SH2D4AQ9H788 454 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 USP54Q70EL1 1684 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 CAMK4Q16566 473 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 STYK1Q6J9G0 422 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 C6orf50Q9HD87 102 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 PNPLA7Q6ZV29 1317 aa13.34□□□□□ -0.27
VPS4A-201ENST00000254950 CLSTN1O94985 981 aa13.33□□□□□ -0.27
VPS4A-201ENST00000254950 ADD1P35611 737 aaKnown RBP13.33□□□□□ -0.27
VPS4A-201ENST00000254950 TNFAIP1Q13829 316 aa13.33□□□□□ -0.27
VPS4A-201ENST00000254950 RAB34Q9BZG1 259 aa13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms