RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 DDTLA6NHG4 134 aaPredicted RBP28.02■■■□□ 2.08
LSM4-201ENST00000252816 CASP8AP2Q9UKL3 1982 aa28.01■■■□□ 2.07
LSM4-201ENST00000252816 AK9Q5TCS8 1911 aa28.01■■■□□ 2.07
LSM4-201ENST00000252816 IDH1O75874 414 aaKnown RBP28.01■■■□□ 2.07
LSM4-201ENST00000252816 MAP4K4O95819 1239 aaPredicted RBP28.01■■■□□ 2.07
LSM4-201ENST00000252816 INPP5BP32019 993 aa28.01■■■□□ 2.07
LSM4-201ENST00000252816 CRBNQ96SW2 442 aa28.01■■■□□ 2.07
LSM4-201ENST00000252816 AATFQ9NY61 560 aaKnown RBP eCLIP28.01■■■□□ 2.07
LSM4-201ENST00000252816 ZNF112Q9UJU3 913 aa28.01■■■□□ 2.07
LSM4-201ENST00000252816 SMARCA5O60264 1052 aaPredicted RBP28■■■□□ 2.07
LSM4-201ENST00000252816 IGSF3O75054 1194 aa28■■■□□ 2.07
LSM4-201ENST00000252816 NPM3O75607 178 aaKnown RBP28■■■□□ 2.07
LSM4-201ENST00000252816 ZSCAN29Q8IWY8 852 aaPredicted RBP28■■■□□ 2.07
LSM4-201ENST00000252816 SH3RF3Q8TEJ3 882 aaPredicted RBP28■■■□□ 2.07
LSM4-201ENST00000252816 LRRCC1Q9C099 1032 aa28■■■□□ 2.07
LSM4-201ENST00000252816 DCTPP1Q9H773 170 aa28■■■□□ 2.07
LSM4-201ENST00000252816 SPDYE5A6NIY4 337 aa27.99■■■□□ 2.07
LSM4-201ENST00000252816 TBC1D8O95759 1140 aa27.99■■■□□ 2.07
LSM4-201ENST00000252816 SLURP2P0DP57 97 aa27.99■■■□□ 2.07
LSM4-201ENST00000252816 INHBEP58166 350 aa27.99■■■□□ 2.07
LSM4-201ENST00000252816 PPP4CP60510 307 aa27.99■■■□□ 2.07
LSM4-201ENST00000252816 TEX11Q8IYF3 940 aa27.99■■■□□ 2.07
LSM4-201ENST00000252816 OTUD5Q96G74 571 aa27.99■■■□□ 2.07
LSM4-201ENST00000252816 LAMB1P07942 1786 aa27.99■■■□□ 2.07
LSM4-201ENST00000252816 IGF2BP3O00425 579 aaKnown RBP eCLIP27.98■■■□□ 2.07
LSM4-201ENST00000252816 IFNL1Q8IU54 200 aa27.98■■■□□ 2.07
LSM4-201ENST00000252816 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.98■■■□□ 2.07
LSM4-201ENST00000252816 MS4A4AQ96JQ5 239 aa27.98■■■□□ 2.07
LSM4-201ENST00000252816 NOL10Q9BSC4 688 aaKnown RBP27.98■■■□□ 2.07
LSM4-201ENST00000252816 BAG3O95817 575 aa27.97■■■□□ 2.07
LSM4-201ENST00000252816 CYP7A1P22680 504 aa27.97■■■□□ 2.07
LSM4-201ENST00000252816 ERO1BQ86YB8 467 aa27.97■■■□□ 2.07
LSM4-201ENST00000252816 MAGEB6Q8N7X4 407 aa27.97■■■□□ 2.07
LSM4-201ENST00000252816 DOCK2Q92608 1830 aa27.97■■■□□ 2.07
LSM4-201ENST00000252816 TESPA1A2RU30 521 aaPredicted RBP27.96■■■□□ 2.07
LSM4-201ENST00000252816 PHF20L1A8MW92 1017 aa27.96■■■□□ 2.07
LSM4-201ENST00000252816 MAP3K10Q02779 954 aa27.96■■■□□ 2.07
LSM4-201ENST00000252816 PTPN18Q99952 460 aa27.96■■■□□ 2.07
LSM4-201ENST00000252816 OSBPL5Q9H0X9 879 aaPredicted RBP27.96■■■□□ 2.07
LSM4-201ENST00000252816 R3HDMLQ9H3Y0 253 aa27.96■■■□□ 2.07
LSM4-201ENST00000252816 PLCG2P16885 1265 aa27.95■■■□□ 2.06
LSM4-201ENST00000252816 DYNLL1P63167 89 aaKnown RBP27.95■■■□□ 2.06
LSM4-201ENST00000252816 MAP3K12Q12852 859 aa27.95■■■□□ 2.06
LSM4-201ENST00000252816 DNAJC2Q99543 621 aaKnown RBP27.95■■■□□ 2.06
LSM4-201ENST00000252816 ATP5JP18859 108 aa27.94■■■□□ 2.06
LSM4-201ENST00000252816 BRI3BPQ8WY22 251 aa27.94■■■□□ 2.06
LSM4-201ENST00000252816 EDC3Q96F86 508 aaKnown RBP27.94■■■□□ 2.06
LSM4-201ENST00000252816 CFHR5Q9BXR6 569 aa27.94■■■□□ 2.06
LSM4-201ENST00000252816 GOLIM4O00461 696 aa27.93■■■□□ 2.06
LSM4-201ENST00000252816 ALDH1A1P00352 501 aa27.93■■■□□ 2.06
LSM4-201ENST00000252816 TTF1Q15361 905 aaPredicted RBP27.93■■■□□ 2.06
LSM4-201ENST00000252816 NOL9Q5SY16 702 aaKnown RBP27.93■■■□□ 2.06
LSM4-201ENST00000252816 MIGA1Q8NAN2 632 aa27.93■■■□□ 2.06
LSM4-201ENST00000252816 BOLA2Q9H3K6 86 aa27.93■■■□□ 2.06
LSM4-201ENST00000252816 COL2A1P02458 1487 aaPredicted RBP27.93■■■□□ 2.06
LSM4-201ENST00000252816 IRF6O14896 467 aa27.92■■■□□ 2.06
LSM4-201ENST00000252816 GTF2A2P52657 109 aa27.92■■■□□ 2.06
LSM4-201ENST00000252816 PPIL2Q13356 520 aa27.92■■■□□ 2.06
LSM4-201ENST00000252816 TGFBRAP1Q8WUH2 860 aa27.92■■■□□ 2.06
LSM4-201ENST00000252816 CCL15-CCL14A0A0B4J2E2 113 aa27.91■■■□□ 2.06
LSM4-201ENST00000252816 CCL15Q16663 113 aa27.91■■■□□ 2.06
LSM4-201ENST00000252816 MAPKAPK5Q8IW41 473 aa27.91■■■□□ 2.06
LSM4-201ENST00000252816 FLT1P17948 1338 aa27.91■■■□□ 2.06
LSM4-201ENST00000252816 FAM196BA6NMK8 535 aa27.9■■■□□ 2.06
LSM4-201ENST00000252816 GPR25O00155 361 aa27.9■■■□□ 2.06
LSM4-201ENST00000252816 PPATQ06203 517 aa27.9■■■□□ 2.06
LSM4-201ENST00000252816 HAUS7Q99871 368 aa27.9■■■□□ 2.06
LSM4-201ENST00000252816 TBC1D12O60347 775 aa27.89■■■□□ 2.06
LSM4-201ENST00000252816 PDE6AP16499 860 aa27.89■■■□□ 2.06
LSM4-201ENST00000252816 NOM1Q5C9Z4 860 aaKnown RBP27.89■■■□□ 2.06
LSM4-201ENST00000252816 TMED8Q6PL24 325 aaPredicted RBP27.89■■■□□ 2.06
LSM4-201ENST00000252816 ZNF296Q8WUU4 475 aaPredicted RBP27.89■■■□□ 2.06
LSM4-201ENST00000252816 PAG1Q9NWQ8 432 aa27.89■■■□□ 2.06
LSM4-201ENST00000252816 CDK5RAP2Q96SN8 1893 aa27.89■■■□□ 2.05
LSM4-201ENST00000252816 SLC9C2Q5TAH2 1124 aa27.88■■■□□ 2.05
LSM4-201ENST00000252816 OTUD7BQ6GQQ9 843 aa27.88■■■□□ 2.05
LSM4-201ENST00000252816 SCYL3Q8IZE3 742 aa27.88■■■□□ 2.05
LSM4-201ENST00000252816 SNAPC2Q13487 334 aa27.87■■■□□ 2.05
LSM4-201ENST00000252816 RIOK1Q9BRS2 568 aaKnown RBP27.87■■■□□ 2.05
LSM4-201ENST00000252816 MCOLN1Q9GZU1 580 aa27.87■■■□□ 2.05
LSM4-201ENST00000252816 XPO5Q9HAV4 1204 aaKnown RBP eCLIP27.87■■■□□ 2.05
LSM4-201ENST00000252816 TCRBV5S4A2TA0A5A2 114 aa27.86■■■□□ 2.05
LSM4-201ENST00000252816 CAPN15O75808 1086 aa27.86■■■□□ 2.05
LSM4-201ENST00000252816 CETPP11597 493 aa27.86■■■□□ 2.05
LSM4-201ENST00000252816 CRHR2Q13324 411 aa27.86■■■□□ 2.05
LSM4-201ENST00000252816 DGKZQ13574 1117 aa27.86■■■□□ 2.05
LSM4-201ENST00000252816 FAM43AQ8N2R8 423 aa27.86■■■□□ 2.05
LSM4-201ENST00000252816 DHX36Q9H2U1 1008 aaKnown RBP27.86■■■□□ 2.05
LSM4-201ENST00000252816 ECHDC1Q9NTX5 307 aa27.86■■■□□ 2.05
LSM4-201ENST00000252816 KCNH4Q9UQ05 1017 aa27.86■■■□□ 2.05
LSM4-201ENST00000252816 FOCADQ5VW36 1801 aa27.85■■■□□ 2.05
LSM4-201ENST00000252816 CTNND1O60716 968 aaKnown RBP27.85■■■□□ 2.05
LSM4-201ENST00000252816 CERS3Q8IU89 383 aa27.85■■■□□ 2.05
LSM4-201ENST00000252816 PI4KBQ9UBF8 816 aa27.85■■■□□ 2.05
LSM4-201ENST00000252816 SAP30BPQ9UHR5 308 aaKnown RBP27.85■■■□□ 2.05
LSM4-201ENST00000252816 PALD1Q9ULE6 856 aa27.85■■■□□ 2.05
LSM4-201ENST00000252816 ZNF532Q9HCE3 1301 aa27.85■■■□□ 2.05
LSM4-201ENST00000252816 SIPA1L1O43166 1804 aa27.84■■■□□ 2.05
LSM4-201ENST00000252816 PTPRAP18433 802 aa27.84■■■□□ 2.05
LSM4-201ENST00000252816 RRP1BQ14684 758 aaKnown RBP27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms