RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 MPHOSPH8Q99549 860 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 KCND1Q9NSA2 647 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 ZSWIM5Q9P217 1185 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 HPSEQ9Y251 543 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 ECM29Q5VYK3 1845 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 EXOC5O00471 708 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 IFIT3O14879 490 aaKnown RBP18.97■□□□□ 0.63
HOXD3-201ENST00000249440 SMC2O95347 1197 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 PTPAQ15257 358 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 KRT23Q9C075 422 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 XPO4Q9C0E2 1151 aaKnown RBP18.97■□□□□ 0.63
HOXD3-201ENST00000249440 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.97■□□□□ 0.63
HOXD3-201ENST00000249440 SPATA31A5Q5VU36 1347 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 SPATA31A7Q8IWB4 1347 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 STK36Q9NRP7 1315 aa18.97■□□□□ 0.63
HOXD3-201ENST00000249440 IKBKBO14920 756 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 MBD4O95243 580 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 SSRP1Q08945 709 aaKnown RBP18.96■□□□□ 0.63
HOXD3-201ENST00000249440 RASGRF1Q13972 1273 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 FAM98CQ17RN3 349 aaKnown RBP18.96■□□□□ 0.63
HOXD3-201ENST00000249440 NYAP1Q6ZVC0 841 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 WASF1Q92558 559 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 MAP3K14Q99558 947 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 EPB41L4AQ9HCS5 686 aaPredicted RBP18.96■□□□□ 0.63
HOXD3-201ENST00000249440 FAM217BQ9NTX9 383 aaPredicted RBP18.96■□□□□ 0.63
HOXD3-201ENST00000249440 IFNKQ9P0W0 207 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 TUBE1Q9UJT0 475 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 USP21Q9UK80 565 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 WNK3Q9BYP7 1800 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 FAM237AA0A1B0GTK4 181 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 USP27XA6NNY8 438 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 PPP4R3BQ5MIZ7 849 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 AKNAD1Q5T1N1 836 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 SHC4Q6S5L8 630 aa18.96■□□□□ 0.63
HOXD3-201ENST00000249440 FNBP4Q8N3X1 1017 aaPredicted RBP18.96■□□□□ 0.63
HOXD3-201ENST00000249440 AFF2P51816 1311 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 RANBP6O60518 1105 aaKnown RBP18.95■□□□□ 0.62
HOXD3-201ENST00000249440 GNAT2P19087 354 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 CTDSPL2Q05D32 466 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 NCAPHQ15003 741 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 MFSD6Q6ZSS7 791 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 CCAR2Q8N163 923 aaKnown RBP18.95■□□□□ 0.62
HOXD3-201ENST00000249440 CCDC150Q8NCX0 1101 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 ZNF592Q92610 1267 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.95■□□□□ 0.62
HOXD3-201ENST00000249440 NACAP1Q9BZK3 213 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 ZMYND15Q9H091 742 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 RESP18Q5W5W9 173 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 MYL10Q9BUA6 226 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 SLC26A6Q9BXS9 759 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 ARMT1Q9H993 441 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 INCENPQ9NQS7 918 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 TAOK2Q9UL54 1235 aa18.95■□□□□ 0.62
HOXD3-201ENST00000249440 CUTAO60888 179 aa18.94■□□□□ 0.62
HOXD3-201ENST00000249440 FMNL1O95466 1100 aaPredicted RBP18.94■□□□□ 0.62
HOXD3-201ENST00000249440 SART3Q15020 963 aaKnown RBP18.94■□□□□ 0.62
HOXD3-201ENST00000249440 GSG1L2A8MUP6 293 aa18.94■□□□□ 0.62
HOXD3-201ENST00000249440 KIF2AO00139 706 aaPredicted RBP18.94■□□□□ 0.62
HOXD3-201ENST00000249440 NRDCO43847 1150 aa18.94■□□□□ 0.62
HOXD3-201ENST00000249440 IFNAR1P17181 557 aa18.94■□□□□ 0.62
HOXD3-201ENST00000249440 NCBP1Q09161 790 aaKnown RBP18.94■□□□□ 0.62
HOXD3-201ENST00000249440 FAM182BQ5T319 152 aa18.94■□□□□ 0.62
HOXD3-201ENST00000249440 SUSD4Q5VX71 490 aa18.94■□□□□ 0.62
HOXD3-201ENST00000249440 TMC6Q7Z403 805 aa18.94■□□□□ 0.62
HOXD3-201ENST00000249440 EIF5P55010 431 aaKnown RBP18.93■□□□□ 0.62
HOXD3-201ENST00000249440 TIAM2Q8IVF5 1701 aa18.93■□□□□ 0.62
HOXD3-201ENST00000249440 NID2Q14112 1375 aa18.93■□□□□ 0.62
HOXD3-201ENST00000249440 SFPQP23246 707 aaKnown RBP eCLIP18.92■□□□□ 0.62
HOXD3-201ENST00000249440 TDO2P48775 406 aa18.92■□□□□ 0.62
HOXD3-201ENST00000249440 SAFBQ15424 915 aaKnown RBP eCLIP18.92■□□□□ 0.62
HOXD3-201ENST00000249440 TRIM22Q8IYM9 498 aa18.92■□□□□ 0.62
HOXD3-201ENST00000249440 UTP14AQ9BVJ6 771 aaKnown RBP18.92■□□□□ 0.62
HOXD3-201ENST00000249440 TRMT1Q9NXH9 659 aaKnown RBP18.92■□□□□ 0.62
HOXD3-201ENST00000249440 PNPLA7Q6ZV29 1317 aa18.92■□□□□ 0.62
HOXD3-201ENST00000249440 ISM2Q6H9L7 571 aa18.92■□□□□ 0.62
HOXD3-201ENST00000249440 NOSTRINQ8IVI9 506 aa18.92■□□□□ 0.62
HOXD3-201ENST00000249440 STAG1Q8WVM7 1258 aa18.92■□□□□ 0.62
HOXD3-201ENST00000249440 MTA3Q9BTC8 594 aa18.92■□□□□ 0.62
HOXD3-201ENST00000249440 ERICH2A1L162 156 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 LMOD1P29536 600 aaPredicted RBP18.91■□□□□ 0.62
HOXD3-201ENST00000249440 FANCCQ00597 558 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 CCDC152Q4G0S7 254 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 TMTC2Q8N394 836 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 CLIC6Q96NY7 704 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 SLC4A4Q9Y6R1 1079 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 SNAP23O00161 211 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 IGHMBP2P38935 993 aaKnown RBP18.91■□□□□ 0.62
HOXD3-201ENST00000249440 WTAPQ15007 396 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 SMAP1Q8IYB5 467 aaPredicted RBP18.91■□□□□ 0.62
HOXD3-201ENST00000249440 KRI1Q8N9T8 703 aaKnown RBP18.91■□□□□ 0.62
HOXD3-201ENST00000249440 CNNM3Q8NE01 707 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 KIF18AQ8NI77 898 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 SEC31BQ9NQW1 1179 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 TOMM22Q9NS69 142 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 KCNH3Q9ULD8 1083 aa18.91■□□□□ 0.62
HOXD3-201ENST00000249440 CCDC196A0A1B0GTZ2 297 aa18.9■□□□□ 0.62
HOXD3-201ENST00000249440 MMP1P03956 469 aa18.9■□□□□ 0.62
HOXD3-201ENST00000249440 KCNJ6P48051 423 aa18.9■□□□□ 0.62
HOXD3-201ENST00000249440 MYL5Q02045 173 aa18.9■□□□□ 0.62
HOXD3-201ENST00000249440 PNOCQ13519 176 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms