RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 ALS2CR12Q96Q35 445 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 BICDL2A1A5D9 508 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 PLCD1P51178 756 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 NSMFQ6X4W1 530 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 NLRP10Q86W26 655 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 GJD4Q96KN9 370 aaPredicted RBP11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 PKD2L1Q9P0L9 805 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 USP17L12C9JPN9 530 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 USP17L21D6R901 530 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 PDE6AP16499 860 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 CTNNA2P26232 953 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 PNMA2Q9UL42 364 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 ATP10DQ9P241 1426 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 ZNF771Q7L3S4 317 aaPredicted RBP11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 KRT25Q7Z3Z0 450 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 TMC6Q7Z403 805 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 SYNCQ9H7C4 482 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.73□□□□□ -0.536e-6■□□□□ 9.8
NIPAL3-201ENST00000003912 SPATA31A6Q5VVP1 1343 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 MYCLP12524 364 aaPredicted RBP11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 GBP2P32456 591 aaPredicted RBP11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 HAUS7Q99871 368 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 SNX14Q9Y5W7 946 aa11.73□□□□□ -0.53
NIPAL3-201ENST00000003912 TULP4Q9NRJ4 1543 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 KIF22Q14807 665 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 ZRSR2Q15696 482 aaKnown RBP11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 EAF2Q96CJ1 260 aaPredicted RBP11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 FERMT1Q9BQL6 677 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 CCDC65Q8IXS2 484 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 RTKN2Q8IZC4 609 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 ATG3Q9NT62 314 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 ADRA2BP18089 450 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 ZNF174Q15697 407 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 SLC27A3Q5K4L6 730 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 SV2BQ7L1I2 683 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 MMP10P09238 476 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 CCT6AP40227 531 aaKnown RBP11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 PAFAH1B1P43034 410 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 NONOQ15233 471 aaKnown RBP eCLIP11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 PTPN14Q15678 1187 aa11.72□□□□□ -0.53
NIPAL3-201ENST00000003912 CYP27B1O15528 508 aa11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 IFI16Q16666 785 aaKnown RBP11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 KIF4BQ2VIQ3 1234 aa11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 UVSSAQ2YD98 709 aa11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 CERKLQ49MI3 558 aaPredicted RBP11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 PIK3AP1Q6ZUJ8 805 aa11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 DACT1Q9NYF0 836 aa11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 USP25Q9UHP3 1055 aa11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 SPHKAPQ2M3C7 1700 aa11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 MACROD2A1Z1Q3 448 aa11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 MTERF4Q7Z6M4 381 aaKnown RBP11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 TTLL6Q8N841 843 aa11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 CTNNBL1Q8WYA6 563 aaPredicted RBP11.71□□□□□ -0.53
NIPAL3-201ENST00000003912 CPA1P15085 419 aa11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 SMTNP53814 917 aa11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 IFNL3Q8IZI9 196 aa11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 AZI2Q9H6S1 392 aa11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 SRP68Q9UHB9 627 aaKnown RBP11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 GLI2P10070 1586 aa11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 VWA3AA6NCI4 1184 aa11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 CCNT1O60563 726 aaKnown RBP11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 EIF3JO75822 258 aaKnown RBP11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 RPL13P26373 211 aaKnown RBP11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 FAM47AQ5JRC9 791 aa11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 OTUD7BQ6GQQ9 843 aa11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 KIFC2Q96AC6 838 aa11.71□□□□□ -0.54
NIPAL3-201ENST00000003912 USH1GQ495M9 461 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 GIMAP6Q6P9H5 292 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 FAM212AQ96EL1 285 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 MASTLQ96GX5 879 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 PRAMEF22A3QJZ6 481 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 AKR1B10O60218 316 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 CASQ1P31415 396 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 PPP1R2P41236 205 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 NOP2P46087 812 aaKnown RBP11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 GRAPQ13588 217 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 UBE3CQ15386 1083 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 GRAPLQ8TC17 118 aaPredicted RBP11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 HOMER2Q9NSB8 354 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 LMTK2Q8IWU2 1503 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 CHMP2AO43633 222 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 CFBP00751 764 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 MCTP2Q6DN12 878 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 LUZP1Q86V48 1076 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 IFT74Q96LB3 600 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 CRB1P82279 1406 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 GOLGA6L9A6NEM1 432 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 E7EWF7 191 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 PCP11498 1178 aaKnown RBP11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 PHKA1P46020 1223 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 UBASH3AP57075 661 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 SUPT20HL1Q3ZLR7 823 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 SPC25Q9HBM1 224 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 TMCO5BA8MYB1 307 aa11.7□□□□□ -0.54
NIPAL3-201ENST00000003912 DIS3L2Q8IYB7 885 aaKnown RBP11.69□□□□□ -0.54
NIPAL3-201ENST00000003912 SEC31BQ9NQW1 1179 aa11.69□□□□□ -0.54
NIPAL3-201ENST00000003912 ARID4AP29374 1257 aaPredicted RBP11.69□□□□□ -0.54
NIPAL3-201ENST00000003912 PUS3Q9BZE2 481 aaKnown RBP11.69□□□□□ -0.54
NIPAL3-201ENST00000003912 ATP8A2Q9NTI2 1148 aa11.69□□□□□ -0.54
NIPAL3-201ENST00000003912 NARFQ9UHQ1 456 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms