RNA–Protein interactions for RNA: YMR123W

PKR1, Transcript of V-ATPase assembly factor, yeast

Gene PKR1, Length 369 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PKR1	YMR123W	YDR344C	Q05510	147 aa		6.49	□□□□□ -1.37
PKR1	YMR123W	VRP1	P37370	817 aa		6.47	□□□□□ -1.37
PKR1	YMR123W	XDJ1	P39102	459 aa		6.44	□□□□□ -1.38
PKR1	YMR123W	JIP4	Q03361	876 aa		6.44	□□□□□ -1.38
PKR1	YMR123W	DPS1	P04802	557 aa	Known RBP	6.41	□□□□□ -1.38
PKR1	YMR123W	COQ8	P27697	501 aa		6.4	□□□□□ -1.38
PKR1	YMR123W	DCW1	P36091	449 aa		6.4	□□□□□ -1.38
PKR1	YMR123W	MIF2	P35201	549 aa		6.39	□□□□□ -1.39
PKR1	YMR123W	EDS1	P38073	919 aa		6.39	□□□□□ -1.39
PKR1	YMR123W	NOP53	Q12080	455 aa	Known RBP	6.39	□□□□□ -1.39
PKR1	YMR123W	GYP5	Q12344	894 aa		6.39	□□□□□ -1.39
PKR1	YMR123W	ABP1	P15891	592 aa	Known RBP	6.38	□□□□□ -1.39
PKR1	YMR123W	YEL023C	P39992	682 aa		6.37	□□□□□ -1.39
PKR1	YMR123W	HTA1	P04911	132 aa	Known RBP	6.36	□□□□□ -1.39
PKR1	YMR123W	HTA2	P04912	132 aa		6.36	□□□□□ -1.39
PKR1	YMR123W	PTC3	P34221	468 aa	Known RBP	6.36	□□□□□ -1.39
PKR1	YMR123W	PTC4	P38089	393 aa		6.34	□□□□□ -1.39
PKR1	YMR123W	GRE2	Q12068	342 aa	Known RBP	6.34	□□□□□ -1.39
PKR1	YMR123W	SET1	P38827	1080 aa	Known RBP	6.32	□□□□□ -1.4
PKR1	YMR123W	RGA1	P39083	1007 aa		6.32	□□□□□ -1.4
PKR1	YMR123W	ELP4	Q02884	456 aa	Known RBP	6.32	□□□□□ -1.4
PKR1	YMR123W	SRC1	Q03707	834 aa		6.32	□□□□□ -1.4
PKR1	YMR123W	GUT1	P32190	709 aa		6.3	□□□□□ -1.4
PKR1	YMR123W	DMA1	P38823	416 aa		6.3	□□□□□ -1.4
PKR1	YMR123W	ATH1	P48016	1211 aa		6.3	□□□□□ -1.4
PKR1	YMR123W	PML39	Q03760	334 aa		6.3	□□□□□ -1.4
PKR1	YMR123W	RQC2	Q12532	1038 aa	Known RBP	6.27	□□□□□ -1.41
PKR1	YMR123W	IFH1	P39520	1085 aa		6.25	□□□□□ -1.41
PKR1	YMR123W	NST1	P53935	1240 aa		6.22	□□□□□ -1.41
PKR1	YMR123W	YPR148C	Q06523	435 aa		6.22	□□□□□ -1.41
PKR1	YMR123W	SOL3	P38858	249 aa		6.21	□□□□□ -1.42
PKR1	YMR123W	MID1	P41821	548 aa		6.19	□□□□□ -1.42
PKR1	YMR123W	YGR273C	P53329	174 aa		6.19	□□□□□ -1.42
PKR1	YMR123W	AI4	P03878	556 aa		6.17	□□□□□ -1.42
PKR1	YMR123W	MPH3	P0CE00	602 aa		6.17	□□□□□ -1.42
PKR1	YMR123W	ARH1	P48360	493 aa		6.17	□□□□□ -1.42
PKR1	YMR123W	SAS10	Q12136	610 aa	Predicted RBP	6.14	□□□□□ -1.43
PKR1	YMR123W	ILV3	P39522	585 aa	Known RBP	6.13	□□□□□ -1.43
PKR1	YMR123W	VPS70	P47161	811 aa		6.11	□□□□□ -1.43
PKR1	YMR123W	KEX1	P09620	729 aa		6.1	□□□□□ -1.43
PKR1	YMR123W	SPT23	P35210	1082 aa		6.1	□□□□□ -1.43
PKR1	YMR123W	UBP14	P38237	781 aa	Known RBP	6.09	□□□□□ -1.43
PKR1	YMR123W	REF2	P42073	533 aa	Predicted RBP	6.09	□□□□□ -1.43
PKR1	YMR123W	YLR326W	Q06170	240 aa	Known RBP	6.09	□□□□□ -1.43
PKR1	YMR123W	VHR2	P40041	505 aa		6.08	□□□□□ -1.44
PKR1	YMR123W	CKB1	P43639	278 aa		6.08	□□□□□ -1.44
PKR1	YMR123W	RAS1	P01119	309 aa		6.07	□□□□□ -1.44
PKR1	YMR123W	PEX29	Q03370	554 aa		6.07	□□□□□ -1.44
PKR1	YMR123W	RAD54	P32863	898 aa		6.04	□□□□□ -1.44
PKR1	YMR123W	SLI15	P38283	698 aa		6.04	□□□□□ -1.44
PKR1	YMR123W	YDR090C	Q03193	310 aa		6.04	□□□□□ -1.44
PKR1	YMR123W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	6.03	□□□□□ -1.44	not detected
PKR1	YMR123W	HAP5	Q02516	242 aa		6.03	□□□□□ -1.44
PKR1	YMR123W	MAK21	Q12176	1025 aa	Known RBP	6.03	□□□□□ -1.44
PKR1	YMR123W	PTC2	P39966	464 aa	Known RBP	6	□□□□□ -1.45
PKR1	YMR123W	COX6	P00427	148 aa		5.99	□□□□□ -1.45
PKR1	YMR123W	KIC1	P38692	1080 aa		5.99	□□□□□ -1.45
PKR1	YMR123W	MPC54	Q08550	464 aa		5.99	□□□□□ -1.45
PKR1	YMR123W	PBS2	P08018	668 aa		5.98	□□□□□ -1.45
PKR1	YMR123W	BNI4	P53858	892 aa		5.98	□□□□□ -1.45
PKR1	YMR123W	DPL1	Q05567	589 aa		5.98	□□□□□ -1.45
PKR1	YMR123W	YML082W	Q04533	649 aa	Known RBP	5.97	□□□□□ -1.45
PKR1	YMR123W	RPP1B	P10622	106 aa	Known RBP	5.95	□□□□□ -1.46
PKR1	YMR123W	DSF2	P38213	736 aa		5.95	□□□□□ -1.46
PKR1	YMR123W	CDC73	Q06697	393 aa		5.94	□□□□□ -1.46
PKR1	YMR123W	NMA111	P53920	997 aa		5.93	□□□□□ -1.46
PKR1	YMR123W	ORC6	P38826	435 aa		5.92	□□□□□ -1.46
PKR1	YMR123W	ISU2	Q12056	156 aa		5.92	□□□□□ -1.46
PKR1	YMR123W	MAM3	Q12296	706 aa		5.92	□□□□□ -1.46
PKR1	YMR123W	YPR015C	Q12531	247 aa		5.92	□□□□□ -1.46
PKR1	YMR123W	GAP1	P19145	602 aa	Predicted RBP	5.91	□□□□□ -1.46
PKR1	YMR123W	SPB4	P25808	606 aa	Predicted RBP	5.9	□□□□□ -1.46
PKR1	YMR123W	CSC1	Q06538	782 aa		5.9	□□□□□ -1.46
PKR1	YMR123W	TRK1	P12685	1235 aa		5.89	□□□□□ -1.47
PKR1	YMR123W	TFB4	Q12004	338 aa		5.88	□□□□□ -1.47
PKR1	YMR123W	IES2	P40154	320 aa		5.87	□□□□□ -1.47
PKR1	YMR123W	PSE1	P32337	1089 aa	Known RBP	5.85	□□□□□ -1.47
PKR1	YMR123W	NUP42	P49686	430 aa	Known RBP	5.85	□□□□□ -1.47
PKR1	YMR123W	YPL062W	Q02781	134 aa		5.85	□□□□□ -1.47
PKR1	YMR123W	PEX21	P50091	288 aa		5.84	□□□□□ -1.47
PKR1	YMR123W	AMS1	P22855	1083 aa		5.83	□□□□□ -1.48
PKR1	YMR123W	MVP1	P40959	511 aa	Known RBP	5.83	□□□□□ -1.48
PKR1	YMR123W	RGR1	P19263	1082 aa		5.82	□□□□□ -1.48
PKR1	YMR123W	RAM1	P22007	431 aa		5.82	□□□□□ -1.48
PKR1	YMR123W	YRR1	Q12172	810 aa		5.81	□□□□□ -1.48
PKR1	YMR123W	PDR1	P12383	1068 aa		5.8	□□□□□ -1.48
PKR1	YMR123W	SDH2	P21801	266 aa		5.8	□□□□□ -1.48
PKR1	YMR123W	DIT2	P21595	489 aa		5.79	□□□□□ -1.48
PKR1	YMR123W	TUM1	Q08686	304 aa	Known RBP	5.79	□□□□□ -1.48
PKR1	YMR123W	LEU3	P08638	886 aa		5.78	□□□□□ -1.48
PKR1	YMR123W	CLB5	P30283	435 aa		5.78	□□□□□ -1.48
PKR1	YMR123W	YPR109W	Q06104	294 aa		5.78	□□□□□ -1.48
PKR1	YMR123W	GYP1	Q08484	637 aa		5.78	□□□□□ -1.48
PKR1	YMR123W	YNR021W	P53723	404 aa	Known RBP	5.77	□□□□□ -1.49
PKR1	YMR123W	NUD1	P32336	851 aa		5.75	□□□□□ -1.49
PKR1	YMR123W	STR2	P47164	639 aa		5.74	□□□□□ -1.49
PKR1	YMR123W	TEA1	P47988	759 aa		5.72	□□□□□ -1.49
PKR1	YMR123W	ISM1	P48526	1002 aa		5.72	□□□□□ -1.49
PKR1	YMR123W	BUD20	Q08004	166 aa	Predicted RBP	5.72	□□□□□ -1.49
PKR1	YMR123W	NPL4	P33755	580 aa		5.71	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 6.6 ms