RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C MGA2P40578 1113 aa8.54□□□□□ -1.04
RUB1YDR139C HTA1P04911 132 aaKnown RBP8.51□□□□□ -1.05
RUB1YDR139C HTA2P04912 132 aa8.51□□□□□ -1.05
RUB1YDR139C JIP4Q03361 876 aa8.51□□□□□ -1.05
RUB1YDR139C VRP1P37370 817 aa8.48□□□□□ -1.05
RUB1YDR139C RQC2Q12532 1038 aaKnown RBP8.48□□□□□ -1.05
RUB1YDR139C PTC4P38089 393 aa8.47□□□□□ -1.05
RUB1YDR139C PML39Q03760 334 aa8.45□□□□□ -1.06
RUB1YDR139C MID1P41821 548 aa8.41□□□□□ -1.06
RUB1YDR139C ELP4Q02884 456 aaKnown RBP8.36□□□□□ -1.07
RUB1YDR139C XDJ1P39102 459 aa8.34□□□□□ -1.07
RUB1YDR139C ABP1P15891 592 aaKnown RBP8.33□□□□□ -1.08
RUB1YDR139C EDS1P38073 919 aa8.32□□□□□ -1.08
RUB1YDR139C DPS1P04802 557 aaKnown RBP8.3□□□□□ -1.08
RUB1YDR139C MIF2P35201 549 aa8.3□□□□□ -1.08
RUB1YDR139C GRE2Q12068 342 aaKnown RBP8.3□□□□□ -1.08
RUB1YDR139C NST1P53935 1240 aa8.27□□□□□ -1.09
RUB1YDR139C DMA1P38823 416 aa8.26□□□□□ -1.09
RUB1YDR139C SOL3P38858 249 aa8.26□□□□□ -1.09
RUB1YDR139C SRC1Q03707 834 aa8.24□□□□□ -1.09
RUB1YDR139C ILV3P39522 585 aaKnown RBP8.23□□□□□ -1.09
RUB1YDR139C PTC3P34221 468 aaKnown RBP8.22□□□□□ -1.09
RUB1YDR139C RAM2P29703 316 aa8.2□□□□□ -1.1
RUB1YDR139C ATH1P48016 1211 aa8.2□□□□□ -1.1
RUB1YDR139C ARH1P48360 493 aa8.19□□□□□ -1.1
RUB1YDR139C PEX29Q03370 554 aa8.17□□□□□ -1.1
RUB1YDR139C GUT1P32190 709 aa8.14□□□□□ -1.11
RUB1YDR139C MAK11P20484 414 aaKnown RBP8.09□□□□□ -1.11
RUB1YDR139C RGA2Q06407 1009 aa8.09□□□□□ -1.11
RUB1YDR139C SPT23P35210 1082 aa8.08□□□□□ -1.12
RUB1YDR139C RAS1P01119 309 aa8.07□□□□□ -1.12
RUB1YDR139C COQ8P27697 501 aa8.07□□□□□ -1.12
RUB1YDR139C MPH3P0CE00 602 aa8.05□□□□□ -1.12
RUB1YDR139C HAP5Q02516 242 aa8.05□□□□□ -1.12
RUB1YDR139C MPC54Q08550 464 aa8.03□□□□□ -1.12
RUB1YDR139C YPR015CQ12531 247 aa8.02□□□□□ -1.13
RUB1YDR139C AI4P03878 556 aa7.99□□□□□ -1.13
RUB1YDR139C PTC2P39966 464 aaKnown RBP7.97□□□□□ -1.13
RUB1YDR139C NMA111P53920 997 aa7.96□□□□□ -1.14
RUB1YDR139C BNI4P53858 892 aa7.95□□□□□ -1.14
RUB1YDR139C SET1P38827 1080 aaKnown RBP7.94□□□□□ -1.14
RUB1YDR139C RGA1P39083 1007 aa7.94□□□□□ -1.14
RUB1YDR139C SLI15P38283 698 aa7.93□□□□□ -1.14
RUB1YDR139C YGR273CP53329 174 aa7.93□□□□□ -1.14
RUB1YDR139C YML082WQ04533 649 aaKnown RBP7.93□□□□□ -1.14
RUB1YDR139C NOP53Q12080 455 aaKnown RBP7.88□□□□□ -1.15
RUB1YDR139C SAS10Q12136 610 aaPredicted RBP7.87□□□□□ -1.15
RUB1YDR139C RAM1P22007 431 aa7.86□□□□□ -1.15
RUB1YDR139C IFH1P39520 1085 aa7.85□□□□□ -1.15
RUB1YDR139C PDR1P12383 1068 aa7.83□□□□□ -1.16
RUB1YDR139C SDH2P21801 266 aa7.82□□□□□ -1.16
RUB1YDR139C DPL1Q05567 589 aa7.82□□□□□ -1.16
RUB1YDR139C CDC73Q06697 393 aa7.82□□□□□ -1.16
RUB1YDR139C YPR148CQ06523 435 aa7.8□□□□□ -1.16
RUB1YDR139C VPS70P47161 811 aa7.75□□□□□ -1.17
RUB1YDR139C KEX1P09620 729 aa7.74□□□□□ -1.17
RUB1YDR139C CKB1P43639 278 aa7.72□□□□□ -1.17
RUB1YDR139C GYP1Q08484 637 aa7.72□□□□□ -1.17
RUB1YDR139C AMS1P22855 1083 aa7.69□□□□□ -1.18
RUB1YDR139C TRK1P12685 1235 aa7.67□□□□□ -1.18
RUB1YDR139C ISU2Q12056 156 aa7.67□□□□□ -1.18
RUB1YDR139C VHR2P40041 505 aa7.64□□□□□ -1.19
RUB1YDR139C YLR326WQ06170 240 aaKnown RBP7.63□□□□□ -1.19
RUB1YDR139C REF2P42073 533 aaPredicted RBP7.62□□□□□ -1.19
RUB1YDR139C PCS60P38137 543 aaKnown RBP RIP-Chip data7.61□□□□□ -1.19not detected
RUB1YDR139C UBP14P38237 781 aaKnown RBP7.61□□□□□ -1.19
RUB1YDR139C SPB4P25808 606 aaPredicted RBP7.6□□□□□ -1.19
RUB1YDR139C CLA4P48562 842 aa7.6□□□□□ -1.19
RUB1YDR139C AIR1P40507 360 aaKnown RBP7.58□□□□□ -1.2
RUB1YDR139C PBS2P08018 668 aa7.57□□□□□ -1.2
RUB1YDR139C LEU3P08638 886 aa7.57□□□□□ -1.2
RUB1YDR139C BUD20Q08004 166 aaPredicted RBP7.55□□□□□ -1.2
RUB1YDR139C DSF2P38213 736 aa7.54□□□□□ -1.2
RUB1YDR139C MAK21Q12176 1025 aaKnown RBP7.54□□□□□ -1.2
RUB1YDR139C STR2P47164 639 aa7.51□□□□□ -1.21
RUB1YDR139C COX6P00427 148 aa7.5□□□□□ -1.21
RUB1YDR139C CST6P40535 587 aa7.49□□□□□ -1.21
RUB1YDR139C ISM1P48526 1002 aa7.49□□□□□ -1.21
RUB1YDR139C YPL062WQ02781 134 aa7.49□□□□□ -1.21
RUB1YDR139C MAM3Q12296 706 aa7.49□□□□□ -1.21
RUB1YDR139C RAD54P32863 898 aa7.48□□□□□ -1.21
RUB1YDR139C KIC1P38692 1080 aa7.48□□□□□ -1.21
RUB1YDR139C YDR090CQ03193 310 aa7.48□□□□□ -1.21
RUB1YDR139C YRR1Q12172 810 aa7.48□□□□□ -1.21
RUB1YDR139C GAR1P28007 205 aaKnown RBP7.46□□□□□ -1.22
RUB1YDR139C IES2P40154 320 aa7.44□□□□□ -1.22
RUB1YDR139C SAS4Q04003 481 aa7.44□□□□□ -1.22
RUB1YDR139C YEL077CQ3E7X8 1277 aa7.43□□□□□ -1.22
RUB1YDR139C PRT1P06103 763 aaKnown RBP7.4□□□□□ -1.22
RUB1YDR139C LEO1P38439 464 aa7.4□□□□□ -1.22
RUB1YDR139C TY1A-DR4O74302 440 aa7.38□□□□□ -1.23
RUB1YDR139C TY1A-HP0C2I4 478 aaKnown RBP7.38□□□□□ -1.23
RUB1YDR139C TY1A-AP0CX57 440 aa7.38□□□□□ -1.23
RUB1YDR139C TY1A-PR1P0CX58 440 aa7.38□□□□□ -1.23
RUB1YDR139C TY1A-ORP0CX59 440 aa7.38□□□□□ -1.23
RUB1YDR139C TY1A-PR2P0CX60 440 aa7.38□□□□□ -1.23
RUB1YDR139C TY1A-DR5P0CX65 440 aa7.38□□□□□ -1.23
RUB1YDR139C TY1A-ER2P0CX66 440 aa7.38□□□□□ -1.23
RUB1YDR139C TY1A-GR3P0CX67 440 aa7.38□□□□□ -1.23
RUB1YDR139C TY1A-LR1P0CX68 440 aa7.38□□□□□ -1.23
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms